SNP Profiles of PA 107   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCAGCGTTTTCCTTTTCCAAAGCCAACT
1._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCAAAGCCAACT
2._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCAAAGCCAACT
3._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCAAAGCCAACT
4._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCAAAGCCAACT
5._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCAAAGCCAACT
6._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCAAAGCCAACT
7._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCAAAGCCAACT
8._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCAAAGCCAACT
9._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCAAAGCCAACT
10._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCAAAGCCAACT
11._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCAAAGCCAACT
12._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCAAAGCCAACT
13._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCAAAGCCAACT
14._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCAAAGCCAACT
15._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCAAAGCCAACT
16._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCAAAGCCAACT
17._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCAAAGCCAACT
18._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCAAAGCCAACT
19._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCAAAGCCAACT
20._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCAAAGCCAACT
21._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCAAAGCCAACT
22._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCAAAGCCAACT
23._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCAAAGCCAACT
24._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCAAAGCCAACT
25._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCAAAGCCAACT
26._PA_107_[PER]___
CCAGCGTTTTCCTT__CCAAAGCCAACT
27._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCAAAGCCAACT
28._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCAAAGCC__CT
29._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCAAAGCCAACT
30._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCAAAGCCAACT
31._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCAAAGCCAACT
32._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCAAAGCCAACT
33._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCAAAGCCAACT
34._PA_107_[PER]___
CCAGCGTTTTCCTT__CCAAAGCCAACT
35._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCAAAGCCAACT
36._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCAAAGCC__CT
37._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCAAAGCCAACT
38._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCAAAGCCAACT
39._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCAAAGCCAACT
40._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCAAAGCCAACT
41._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCAAAGCCAACT
42._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCAAAGCCAACT
43._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCAAAGCCAACT
44._PA_107_[PER]___
____CG________TT____AG__AA__
45._PA_107_[PER]___
GGAGCGAAAACCAAAA__AAAGGGAAAG
46._PA_107_[PER]___
GGAGCGAAAACCAAAA__AAAGGGAAAG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AACGCTCCGGGGGGCTCCCGTTCTAAGG
1._PA_107_[PER]___
AACGCTCCGGGGGGCTCCCGTTCTAAGG
2._PA_107_[PER]___
AACGCTCCGGGGGGCTCCCGTTCTAAGG
3._PA_107_[PER]___
AACGCTCCGGGGGGCTCCCGTTCTAAGG
4._PA_107_[PER]___
AACGCTCCGGGGGGCTCCCGTTCTAAGG
5._PA_107_[PER]___
AACGCTCCGGGGGGCTCCCGTTCTAAGG
6._PA_107_[PER]___
AACGCTCCGGGGGGCTCCCGTTCTAAGG
7._PA_107_[PER]___
AACGCTCCGGGGGGCTCCCGTTCTAAGG
8._PA_107_[PER]___
AACGCTCCGGGGGGCTCCCGTTCTAAGG
9._PA_107_[PER]___
AACGCTCCGGGGGGCTCCCGTTCTAAGG
10._PA_107_[PER]___
AACGCTCCGGGGGGCTCCCGTTCTAAGG
11._PA_107_[PER]___
AACGCTCCGGGGGGCTCCCGTTCTAAGG
12._PA_107_[PER]___
AACGCTCCGGGGGGCTCCCGTTCTAAGG
13._PA_107_[PER]___
AACGCTCCGGGGGGCTCCCGTTCTAAGG
14._PA_107_[PER]___
AACGCTCCGGGGGGCTCCCGTTCTAAGG
15._PA_107_[PER]___
AACGCTCCGGGGGGCTCCCGTTCTAAGG
16._PA_107_[PER]___
AACGCTCCGGGGGGCTCCCGTTCTAAGG
17._PA_107_[PER]___
AACGCTCCGGGGGGCTCCCGTTCTAAGG
18._PA_107_[PER]___
AACGCTCCGGGGGGCTCCCGTTCTAAGG
19._PA_107_[PER]___
AACGCTCCGGGGGGCTCCCGTTCTAAGG
20._PA_107_[PER]___
AACGCTCCGGGGGGCTCCCGTTCTAAGG
21._PA_107_[PER]___
AACGCTCCGGGGGGCTCCCGTTCTAAGG
22._PA_107_[PER]___
AACGCTCCGGGGGGCTCCCGTTCTAAGG
23._PA_107_[PER]___
AACGCTCCGGGGGGCTCCCGTTCTAAGG
24._PA_107_[PER]___
AACG__CCGGGGGGCTCCCGTTCTAAGG
25._PA_107_[PER]___
AACGCTCCGGGGGGCTCCCGTTCTAAGG
26._PA_107_[PER]___
AACGCTCCGGGGGGCTCCCGTTCTAAGG
27._PA_107_[PER]___
AACGCTCCGGGGGGCTCCCGTTCTAAGG
28._PA_107_[PER]___
AACGCTCCGGGGGGCTCCCGTTCTAAGG
29._PA_107_[PER]___
AACGCTCCGGGGGGCTCCCGTTCTAAGG
30._PA_107_[PER]___
AACGCTCCGGGGGGCTCCCGTTCTAAGG
31._PA_107_[PER]___
AACGCTCCGGGGGGCTCCCGTTCTAAGG
32._PA_107_[PER]___
AACG__CCGGGGGGCTCCCGTTCTAAGG
33._PA_107_[PER]___
AACGCTCCGGGGGGCTCCCGTTCTAAGG
34._PA_107_[PER]___
AACGCTCCGGGGGGCTCCCGTTCTAAGG
35._PA_107_[PER]___
AACGCTCCGGGGGGCTCCCGTTCTAAGG
36._PA_107_[PER]___
AACGCTCCGGGGGGCTCCCGTTCTAAGG
37._PA_107_[PER]___
AACGCTCCGGGGGGCTCCCGTTCTAAGG
38._PA_107_[PER]___
AACGCTCCGGGGGGCTCCCGTTCTAAGG
39._PA_107_[PER]___
AACGCTCCGGGGGGCTCCCGTTCTAAGG
40._PA_107_[PER]___
ATCGCTCCGGGGGGCTCCCGTTCTAAGG
41._PA_107_[PER]___
ATCGCTCCGGGGGGCTCCCGTTCTAAGG
42._PA_107_[PER]___
AACGCTCCGGGGAACTCCCGTTCTAAGG
43._PA_107_[PER]___
AACGCTCCGGGGAACTCCCGTTCTAAGG
44._PA_107_[PER]___
________GGGGAA__CCCG____AA__
45._PA_107_[PER]___
AACGAGGGCCCC__AGCCCGAA__AA__
46._PA_107_[PER]___
AACGAGGGCCCC__AGCCCGAA__AA__
 29 30 31 32 33 34 35 36 37 38 39    
_Input profile
GGAACCAGCCAACTGTACATGGX_XX_XX_X
1._PA_107_[PER]___
GGAACCAGCCAACTGTACATGGX_XX_XX_X
2._PA_107_[PER]___
GGAACCAGCCAACTGTACATGGX_XX_XX_X
3._PA_107_[PER]___
GGAACCAGCCAACTGTACATGGX_XX_XX_X
4._PA_107_[PER]___
GGAACCAGCCAACTGTACATGGX_XX_XX_X
5._PA_107_[PER]___
GGAACCAGCCAACTGTACATGGX_XX_XX_X
6._PA_107_[PER]___
GGAACCAGCCAACTGTACATGGX_XX_XX_X
7._PA_107_[PER]___
GGAACCAGCCAACTGTACATGGX_XX_XX_X
8._PA_107_[PER]___
GGAACCAGCCAACTGTACATGGX_XX_XX_X
9._PA_107_[PER]___
GGAACCAGCCAACTGTACATGGX_XX_XX_X
10._PA_107_[PER]___
GGAACCAGCCAACTGTACATGGX_XX_XX_X
11._PA_107_[PER]___
GGAACCAGCCAACTGTACATGGX_XX_XX_X
12._PA_107_[PER]___
GGAACCAGCCAACTGTACATGGX_XX_XX_X
13._PA_107_[PER]___
GGAACCAGCCAACTGTACATGGX_XX_XX_X
14._PA_107_[PER]___
GGAACCAGCCAACTGTACATGGX_XX_XX_X
15._PA_107_[PER]___
GGAACCAGCCAACTGTACATGGX_XX_XX_X
16._PA_107_[PER]___
GGAACCAGCCAACTGTACATGGX_XX_XX_X
17._PA_107_[PER]___
GGAACCAGCCAACTGTACATGGX_XX_XX_X
18._PA_107_[PER]___
GGAACCAGCCAACTGTACATGGX_XX_XX_X
19._PA_107_[PER]___
GGAACCAGCCAACTGTACATGGX_XX_XX_X
20._PA_107_[PER]___
GGAACCAGCCAACTGTACATGGX_XX_XX_X
21._PA_107_[PER]___
GGAACCAGCCAACTGTACATGGX_XX_XX_X
22._PA_107_[PER]___
GGAACCAGCCAACTGTACATGGX_XX_XX_X
23._PA_107_[PER]___
GGAACCAGCCAACTGTACATGGX_XX_XX_X
24._PA_107_[PER]___
GGAACCAGCCAACTGTACATGGX_XX_XX_X
25._PA_107_[PER]___
GGAACCAGCCAACT__ACATGGX_XX_XX_X
26._PA_107_[PER]___
GGAACCAGCCAACTGTACATGGX_XX_XX_X
27._PA_107_[PER]___
GGAACCAGCCAA__GTACATGGX_XX_XX_X
28._PA_107_[PER]___
GGAACCAGCCAACTGTACATGGX_XX_XX_X
29._PA_107_[PER]___
GGAACCAGCCAACT__ACATGGX_XX_XX_X
30._PA_107_[PER]___
GGAACCAGCC__CTGTACATGGX_XX_XX_X
31._PA_107_[PER]___
GGAACCAGCC__CTGTACATGGX_XX_XX_X
32._PA_107_[PER]___
GGAACCAGCCAACTGTACATGGX_XX_XX_X
33._PA_107_[PER]___
GGAACCAGCCAA__GTACATGGX_XX_XX_X
34._PA_107_[PER]___
GGAACCAGCCAACTGTACATGGX_XX_XX_X
35._PA_107_[PER]___
GGAACCAGCCAA__GTACATGGX_XX_XX_X
36._PA_107_[PER]___
GGAACCAGCCAACTGTACATGGX_XX_XX_X
37._PA_107_[PER]___
GGAACCAGCCAA__GTACATGGX_XX_XX_X
38._PA_107_[PER]___
GGAACCAGCC__CTGTACATGGX_XX_XX_X
39._PA_107_[PER]___
GGAACCAGCC__CTGTACATGGX_XX_XX_X
40._PA_107_[PER]___
GGAACCAGCC__CTGTACATGGX_XX_XX_X
41._PA_107_[PER]___
GGAACCAGCC__CTGTACATGGX_XX_XX_X
42._PA_107_[PER]___
GGAACCAGCCACCTGTACATGGX_XX_XX_X
43._PA_107_[PER]___
GGAACCAGCCACCTGTACATGGX_XX_XX_X
44._PA_107_[PER]___
______AG________AC____X_XX_XX_X
45._PA_107_[PER]___
GGAAGGAGGGACAGACACATGGX_XX_XX_X
46._PA_107_[PER]___
GGAAGGAGGGACAGACACATGGX_XX_XX_X

Input profile: PA_107_[PER]

 
Mars Center for Cocoa Science, Brazil
Location: 2101 3
 Dapeng Zhang, 2016

1._PA_107_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 2101 10
 Dapeng Zhang, 2016

2._PA_107_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 2101 4 > FP
 Dapeng Zhang, 2016

3._PA_107_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 2101 14 > F
 Dapeng Zhang, 2016

4._PA_107_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 2101 14 > F
 Dapeng Zhang, 2016

5._PA_107_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 2101 1 > FP
 Dapeng Zhang, 2016

6._PA_107_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 2101 16
 Dapeng Zhang, 2016

7._PA_107_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 2101 15
 Dapeng Zhang, 2016

8._PA_107_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 2101 11
 Dapeng Zhang, 2016

9._PA_107_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8310 10
 Dapeng Zhang, 2016

10._PA_107_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 2101 9
 Dapeng Zhang, 2016

11._PA_107_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 2101 2
 Dapeng Zhang, 2016

12._PA_107_[PER] GC-02-001-1-01

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

13._PA_107_[PER] GC-02-001-1-01

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

14._PA_107_[PER] GC-02-001-1-01

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

15._PA_107_[PER] GC-02-001-1-01

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

16._PA_107_[PER] GC-08-111-3-10

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

17._PA_107_[PER] GC-02-001-1-01

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

18._PA_107_[PER] GC-02-001-1-01

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

19._PA_107_[PER] GC-02-001-1-01

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

20._PA_107_[PER] GC-02-001-1-01

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

21._PA_107_[PER] GC-02-001-1-01

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

22._PA_107_[PER] GC-02-001-1-01

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

23._PA_107_[PER] GC-02-001-1-01

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

24._PA_107_[PER]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8310 8
 Dapeng Zhang, 2016

25._PA_107_[PER]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 2101 12
 Dapeng Zhang, 2016

26._PA_107_[PER]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 2101 8
 Dapeng Zhang, 2016

27._PA_107_[PER]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 2101 7
 Dapeng Zhang, 2016

28._PA_107_[PER]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 2101 5
 Dapeng Zhang, 2016

29._PA_107_[PER] GC-02-001-1-01

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

30._PA_107_[PER] GC-08-111-3-10

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

31._PA_107_[PER] GC-08-111-3-10

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

32._PA_107_[PER] GC-08-111-3-10

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

33._PA_107_[PER] GC-08-111-3-10

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP1
 Mars, 2018

34._PA_107_[PER] GC-02-001-1-01

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

35._PA_107_[PER] GC-02-001-1-01

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

36._PA_107_[PER] GC-02-001-1-01

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

37._PA_107_[PER]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8310 4 > FP
 Dapeng Zhang, 2016

38._PA_107_[PER]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8310 14
 Dapeng Zhang, 2016

39._PA_107_[PER]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8310 13
 Dapeng Zhang, 2016

40._PA_107_[PER]

98.7 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8310 7
 Dapeng Zhang, 2016

41._PA_107_[PER] GC-08-111-3-10

98.7 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

42._PA_107_[PER]

96.2 %
39 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: Plot 90 C0213 2B
 Dapeng Zhang, 2016

43._PA_107_[PER]

96.2 %
39 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 284
 Dapeng Zhang, 2016

44._PA_107_[PER] RUQ_1728

91.7 %
12 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

45._PA_107_[PER] RUQ_1728

50 %
35 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

46._PA_107_[PER] MITC-000340

50 %
35 shared markers

USDA-SHRS, United States of America
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1075
11TcSNP1062 12TcSNP1060 13TcSNP998 14TcSNP994 15TcSNP953
16TcSNP929 17TcSNP917 18TcSNP891 19TcSNP872 20TcSNP723
21TcSNP645 22TcSNP619 23TcSNP591 24TcSNP577 25TcSNP560
26TcSNP534 27TcSNP529 28TcSNP469 29TcSNP429 30TcSNP372
31TcSNP242 32TcSNP230 33TcSNP226 34TcSNP193 35TcSNP151
36TcSNP150 37TcSNP144 38TcSNP32 39TcSNP25