SNP Profiles of PA 107 [PER]   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
1._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
2._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
3._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
4._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
5._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
6._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
7._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
8._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
9._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
10._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
11._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
12._GC-02-001-1-01
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
13._GC-02-001-1-01
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
14._GC-02-001-1-01
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
15._GC-08-111-3-10
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
16._GC-02-001-1-01
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
17._GC-02-001-1-01
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
18._GC-02-001-1-01
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
19._GC-02-001-1-01
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
20._GC-02-001-1-01
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
21._GC-02-001-1-01
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
22._GC-02-001-1-01
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
23._GC-02-001-1-01
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
24._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
25._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
26._PA_107_[PER]
CCAGCGTTTTCCTT__CCCCAAAGCCCT
27._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
28._PA_107_[PER]
CCAGCGTTTTCCTTTTCC__AAAGCCCT
29._GC-02-001-1-01
CCAGCGTTTTCCTTTTCC__AAAGCCCT
30._GC-02-001-1-01
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
31._GC-08-111-3-10
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
32._GC-08-111-3-10
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
33._GC-08-111-3-10
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
34._GC-08-111-3-10
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
35._GC-02-001-1-01
CCAGCGTTTTCCTT__CCCCAAAGCCCT
36._GC-02-001-1-01
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
37._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
38._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
39._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
40._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
41._GC-08-111-3-10
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
42._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
43._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCCT
44._RUQ_1728
____CG________TT__CC__AG____
45._RUQ_1728
GGAGCGAAAACCAAAA____AAAGGGAG
46._MITC-000340
GGAGCGAAAACCAAAA____AAAGGGAG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AACGCTCCGGGGGGCTCCCGTTCTAAGG
1._PA_107_[PER]
AACGCTCCGGGGGGCTCCCGTTCTAAGG
2._PA_107_[PER]
AACGCTCCGGGGGGCTCCCGTTCTAAGG
3._PA_107_[PER]
AACGCTCCGGGGGGCTCCCGTTCTAAGG
4._PA_107_[PER]
AACGCTCCGGGGGGCTCCCGTTCTAAGG
5._PA_107_[PER]
AACGCTCCGGGGGGCTCCCGTTCTAAGG
6._PA_107_[PER]
AACGCTCCGGGGGGCTCCCGTTCTAAGG
7._PA_107_[PER]
AACGCTCCGGGGGGCTCCCGTTCTAAGG
8._PA_107_[PER]
AACGCTCCGGGGGGCTCCCGTTCTAAGG
9._PA_107_[PER]
AACGCTCCGGGGGGCTCCCGTTCTAAGG
10._PA_107_[PER]
AACGCTCCGGGGGGCTCCCGTTCTAAGG
11._PA_107_[PER]
AACGCTCCGGGGGGCTCCCGTTCTAAGG
12._GC-02-001-1-01
AACGCTCCGGGGGGCTCCCGTTCTAAGG
13._GC-02-001-1-01
AACGCTCCGGGGGGCTCCCGTTCTAAGG
14._GC-02-001-1-01
AACGCTCCGGGGGGCTCCCGTTCTAAGG
15._GC-08-111-3-10
AACGCTCCGGGGGGCTCCCGTTCTAAGG
16._GC-02-001-1-01
AACGCTCCGGGGGGCTCCCGTTCTAAGG
17._GC-02-001-1-01
AACGCTCCGGGGGGCTCCCGTTCTAAGG
18._GC-02-001-1-01
AACGCTCCGGGGGGCTCCCGTTCTAAGG
19._GC-02-001-1-01
AACGCTCCGGGGGGCTCCCGTTCTAAGG
20._GC-02-001-1-01
AACGCTCCGGGGGGCTCCCGTTCTAAGG
21._GC-02-001-1-01
AACGCTCCGGGGGGCTCCCGTTCTAAGG
22._GC-02-001-1-01
AACGCTCCGGGGGGCTCCCGTTCTAAGG
23._GC-02-001-1-01
AACGCTCCGGGGGGCTCCCGTTCTAAGG
24._PA_107_[PER]
AACG__CCGGGGGGCTCCCGTTCTAAGG
25._PA_107_[PER]
AACGCTCCGGGGGGCTCCCGTTCTAAGG
26._PA_107_[PER]
AACGCTCCGGGGGGCTCCCGTTCTAAGG
27._PA_107_[PER]
AACGCTCCGGGGGGCTCCCGTTCTAAGG
28._PA_107_[PER]
AACGCTCCGGGGGGCTCCCGTTCTAAGG
29._GC-02-001-1-01
AACGCTCCGGGGGGCTCCCGTTCTAAGG
30._GC-02-001-1-01
AACGCTCCGGGGGGCTCCCGTTCTAAGG
31._GC-08-111-3-10
AACGCTCCGGGGGGCTCCCGTTCTAAGG
32._GC-08-111-3-10
AACGCTCCGGGGGGCTCCCGTTCTAAGG
33._GC-08-111-3-10
AACG__CCGGGGGGCTCCCGTTCTAAGG
34._GC-08-111-3-10
AACGCTCCGGGGGGCTCCCGTTCTAAGG
35._GC-02-001-1-01
AACGCTCCGGGGGGCTCCCGTTCTAAGG
36._GC-02-001-1-01
AACGCTCCGGGGGGCTCCCGTTCTAAGG
37._PA_107_[PER]
AACGCTCCGGGGGGCTCCCGTTCTAAGG
38._PA_107_[PER]
AACGCTCCGGGGGGCTCCCGTTCTAAGG
39._PA_107_[PER]
AACGCTCCGGGGGGCTCCCGTTCTAAGG
40._PA_107_[PER]
ATCGCTCCGGGGGGCTCCCGTTCTAAGG
41._GC-08-111-3-10
ATCGCTCCGGGGGGCTCCCGTTCTAAGG
42._PA_107_[PER]
AACGCTCCGGGGAACTCCCGTTCTAAGG
43._PA_107_[PER]
AACGCTCCGGGGAACTCCCGTTCTAAGG
44._RUQ_1728
________GGGGAA__CCCG____AA__
45._RUQ_1728
AACGAGGGCCCC__AGCCCGAA__AA__
46._MITC-000340
AACGAGGGCCCC__AGCCCGAA__AA__
 29 30 31 32 33 34 35 36 37 38 39    
_Input profile
GGAACCAGCCAACTGTACATGGX_XX_XX_X
1._PA_107_[PER]
GGAACCAGCCAACTGTACATGGX_XX_XX_X
2._PA_107_[PER]
GGAACCAGCCAACTGTACATGGX_XX_XX_X
3._PA_107_[PER]
GGAACCAGCCAACTGTACATGGX_XX_XX_X
4._PA_107_[PER]
GGAACCAGCCAACTGTACATGGX_XX_XX_X
5._PA_107_[PER]
GGAACCAGCCAACTGTACATGGX_XX_XX_X
6._PA_107_[PER]
GGAACCAGCCAACTGTACATGGX_XX_XX_X
7._PA_107_[PER]
GGAACCAGCCAACTGTACATGGX_XX_XX_X
8._PA_107_[PER]
GGAACCAGCCAACTGTACATGGX_XX_XX_X
9._PA_107_[PER]
GGAACCAGCCAACTGTACATGGX_XX_XX_X
10._PA_107_[PER]
GGAACCAGCCAACTGTACATGGX_XX_XX_X
11._PA_107_[PER]
GGAACCAGCCAACTGTACATGGX_XX_XX_X
12._GC-02-001-1-01
GGAACCAGCCAACTGTACATGGX_XX_XX_X
13._GC-02-001-1-01
GGAACCAGCCAACTGTACATGGX_XX_XX_X
14._GC-02-001-1-01
GGAACCAGCCAACTGTACATGGX_XX_XX_X
15._GC-08-111-3-10
GGAACCAGCCAACTGTACATGGX_XX_XX_X
16._GC-02-001-1-01
GGAACCAGCCAACTGTACATGGX_XX_XX_X
17._GC-02-001-1-01
GGAACCAGCCAACTGTACATGGX_XX_XX_X
18._GC-02-001-1-01
GGAACCAGCCAACTGTACATGGX_XX_XX_X
19._GC-02-001-1-01
GGAACCAGCCAACTGTACATGGX_XX_XX_X
20._GC-02-001-1-01
GGAACCAGCCAACTGTACATGGX_XX_XX_X
21._GC-02-001-1-01
GGAACCAGCCAACTGTACATGGX_XX_XX_X
22._GC-02-001-1-01
GGAACCAGCCAACTGTACATGGX_XX_XX_X
23._GC-02-001-1-01
GGAACCAGCCAACTGTACATGGX_XX_XX_X
24._PA_107_[PER]
GGAACCAGCCAACTGTACATGGX_XX_XX_X
25._PA_107_[PER]
GGAACCAGCCAACT__ACATGGX_XX_XX_X
26._PA_107_[PER]
GGAACCAGCCAACTGTACATGGX_XX_XX_X
27._PA_107_[PER]
GGAACCAGCCAA__GTACATGGX_XX_XX_X
28._PA_107_[PER]
GGAACCAGCCAACTGTACATGGX_XX_XX_X
29._GC-02-001-1-01
GGAACCAGCCAACTGTACATGGX_XX_XX_X
30._GC-02-001-1-01
GGAACCAGCCAACT__ACATGGX_XX_XX_X
31._GC-08-111-3-10
GGAACCAGCC__CTGTACATGGX_XX_XX_X
32._GC-08-111-3-10
GGAACCAGCC__CTGTACATGGX_XX_XX_X
33._GC-08-111-3-10
GGAACCAGCCAACTGTACATGGX_XX_XX_X
34._GC-08-111-3-10
GGAACCAGCCAA__GTACATGGX_XX_XX_X
35._GC-02-001-1-01
GGAACCAGCCAACTGTACATGGX_XX_XX_X
36._GC-02-001-1-01
GGAACCAGCCAA__GTACATGGX_XX_XX_X
37._PA_107_[PER]
GGAACCAGCCAA__GTACATGGX_XX_XX_X
38._PA_107_[PER]
GGAACCAGCC__CTGTACATGGX_XX_XX_X
39._PA_107_[PER]
GGAACCAGCC__CTGTACATGGX_XX_XX_X
40._PA_107_[PER]
GGAACCAGCC__CTGTACATGGX_XX_XX_X
41._GC-08-111-3-10
GGAACCAGCC__CTGTACATGGX_XX_XX_X
42._PA_107_[PER]
GGAACCAGCCACCTGTACATGGX_XX_XX_X
43._PA_107_[PER]
GGAACCAGCCACCTGTACATGGX_XX_XX_X
44._RUQ_1728
______AG________AC____X_XX_XX_X
45._RUQ_1728
GGAAGGAGGGACAGACACATGGX_XX_XX_X
46._MITC-000340
GGAAGGAGGGACAGACACATGGX_XX_XX_X

Input profile: PA_107_[PER]

 
 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2101 5
 Dapeng Zhang, 2016

1._PA_107_[PER]

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2101 10
 Dapeng Zhang, 2016

2._PA_107_[PER]

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2101 4 > FP
 Dapeng Zhang, 2016

3._PA_107_[PER]

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2101 14 > F
 Dapeng Zhang, 2016

4._PA_107_[PER]

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2101 14 > F
 Dapeng Zhang, 2016

5._PA_107_[PER]

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2101 1 > FP
 Dapeng Zhang, 2016

6._PA_107_[PER]

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2101 16
 Dapeng Zhang, 2016

7._PA_107_[PER]

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2101 15
 Dapeng Zhang, 2016

8._PA_107_[PER]

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2101 11
 Dapeng Zhang, 2016

9._PA_107_[PER]

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8310 10
 Dapeng Zhang, 2016

10._PA_107_[PER]

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2101 9
 Dapeng Zhang, 2016

11._PA_107_[PER]

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2101 2
 Dapeng Zhang, 2016

12._PA_107_[PER] GC-02-001-1-01

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

13._PA_107_[PER] GC-02-001-1-01

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

14._PA_107_[PER] GC-02-001-1-01

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

15._PA_107_[PER] GC-08-111-3-10

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

16._PA_107_[PER] GC-02-001-1-01

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

17._PA_107_[PER] GC-02-001-1-01

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

18._PA_107_[PER] GC-02-001-1-01

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

19._PA_107_[PER] GC-02-001-1-01

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

20._PA_107_[PER] GC-02-001-1-01

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

21._PA_107_[PER] GC-02-001-1-01

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

22._PA_107_[PER] GC-02-001-1-01

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

23._PA_107_[PER] GC-02-001-1-01

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

24._PA_107_[PER]

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8310 8
 Dapeng Zhang, 2016

25._PA_107_[PER]

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2101 12
 Dapeng Zhang, 2016

26._PA_107_[PER]

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2101 8
 Dapeng Zhang, 2016

27._PA_107_[PER]

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2101 7
 Dapeng Zhang, 2016

28._PA_107_[PER]

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2101 3
 Dapeng Zhang, 2016

29._PA_107_[PER] GC-02-001-1-01

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

30._PA_107_[PER] GC-02-001-1-01

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

31._PA_107_[PER] GC-08-111-3-10

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

32._PA_107_[PER] GC-08-111-3-10

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

33._PA_107_[PER] GC-08-111-3-10

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

34._PA_107_[PER] GC-08-111-3-10

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP1
 Mars, 2018

35._PA_107_[PER] GC-02-001-1-01

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

36._PA_107_[PER] GC-02-001-1-01

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

37._PA_107_[PER]

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8310 4 > FP
 Dapeng Zhang, 2016

38._PA_107_[PER]

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8310 14
 Dapeng Zhang, 2016

39._PA_107_[PER]

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8310 13
 Dapeng Zhang, 2016

40._PA_107_[PER]

98.7 %
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8310 7
 Dapeng Zhang, 2016

41._PA_107_[PER] GC-08-111-3-10

98.7 %
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

42._PA_107_[PER]

96.2 %
39 shared markers

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Malaysian Cocoa Board (MCB), Malaysia
Location: Plot 90 C0213 2B
 Dapeng Zhang, 2016

43._PA_107_[PER]

96.2 %
39 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 284
 Dapeng Zhang, 2016

44._PA_107_[PER] RUQ_1728

91.7 %
12 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 
View Data
Par
0.847 Sca
0.137

45._PA_107_[PER] RUQ_1728

48.5 %
34 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

46._PA_107_[PER] MITC-000340

48.5 %
34 shared markers

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USDA-SHRS, United States of America
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP994 15TcSNP953
16TcSNP929 17TcSNP917 18TcSNP891 19TcSNP872 20TcSNP723
21TcSNP645 22TcSNP619 23TcSNP591 24TcSNP577 25TcSNP560
26TcSNP534 27TcSNP529 28TcSNP469 29TcSNP429 30TcSNP372
31TcSNP242 32TcSNP230 33TcSNP226 34TcSNP193 35TcSNP151
36TcSNP150 37TcSNP144 38TcSNP32 39TcSNP25