SNP Profiles of PA 107 [PER]   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
1._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
2._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
3._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
4._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
5._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
6._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
7._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
8._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
9._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
10._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
11._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
12._GC-02-001-1-01
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
13._GC-02-001-1-01
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
14._GC-02-001-1-01
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
15._GC-08-111-3-10
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
16._GC-08-111-3-10
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
17._GC-02-001-1-01
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
18._GC-02-001-1-01
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
19._GC-02-001-1-01
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
20._GC-02-001-1-01
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
21._GC-02-001-1-01
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
22._GC-02-001-1-01
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
23._GC-02-001-1-01
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
24._GC-02-001-1-01
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
25._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
26._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
27._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
28._PA_107_[PER]
CCAGCGTTTTCCTT__CCCCAAAGCCAA
29._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCC__
30._PA_107_[PER]
CCAGCGTTTTCCTTTTCC__AAAGCCAA
31._GC-02-001-1-01
CCAGCGTTTTCCTTTTCC__AAAGCCAA
32._GC-02-001-1-01
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
33._GC-08-111-3-10
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
34._GC-08-111-3-10
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
35._GC-08-111-3-10
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
36._GC-02-001-1-01
CCAGCGTTTTCCTT__CCCCAAAGCCAA
37._GC-02-001-1-01
CCAGCGTTTTCCTTTTCCCCAAAGCC__
38._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
39._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
40._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
41._GC-08-111-3-10
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
42._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
43._PA_107_[PER]
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
44._RUQ_1728
____CG________TT__CC__AG__AA
45._RUQ_1728
GGAGCGAAAACCAAAA____AAAGGGAA
46._MITC-000340
GGAGCGAAAACCAAAA____AAAGGGAA
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
CTAACGCTCCGGGGGGCTCCCGTTCTAA
1._PA_107_[PER]
CTAACGCTCCGGGGGGCTCCCGTTCTAA
2._PA_107_[PER]
CTAACGCTCCGGGGGGCTCCCGTTCTAA
3._PA_107_[PER]
CTAACGCTCCGGGGGGCTCCCGTTCTAA
4._PA_107_[PER]
CTAACGCTCCGGGGGGCTCCCGTTCTAA
5._PA_107_[PER]
CTAACGCTCCGGGGGGCTCCCGTTCTAA
6._PA_107_[PER]
CTAACGCTCCGGGGGGCTCCCGTTCTAA
7._PA_107_[PER]
CTAACGCTCCGGGGGGCTCCCGTTCTAA
8._PA_107_[PER]
CTAACGCTCCGGGGGGCTCCCGTTCTAA
9._PA_107_[PER]
CTAACGCTCCGGGGGGCTCCCGTTCTAA
10._PA_107_[PER]
CTAACGCTCCGGGGGGCTCCCGTTCTAA
11._PA_107_[PER]
CTAACGCTCCGGGGGGCTCCCGTTCTAA
12._GC-02-001-1-01
CTAACGCTCCGGGGGGCTCCCGTTCTAA
13._GC-02-001-1-01
CTAACGCTCCGGGGGGCTCCCGTTCTAA
14._GC-02-001-1-01
CTAACGCTCCGGGGGGCTCCCGTTCTAA
15._GC-08-111-3-10
CTAACGCTCCGGGGGGCTCCCGTTCTAA
16._GC-08-111-3-10
CTAACGCTCCGGGGGGCTCCCGTTCTAA
17._GC-02-001-1-01
CTAACGCTCCGGGGGGCTCCCGTTCTAA
18._GC-02-001-1-01
CTAACGCTCCGGGGGGCTCCCGTTCTAA
19._GC-02-001-1-01
CTAACGCTCCGGGGGGCTCCCGTTCTAA
20._GC-02-001-1-01
CTAACGCTCCGGGGGGCTCCCGTTCTAA
21._GC-02-001-1-01
CTAACGCTCCGGGGGGCTCCCGTTCTAA
22._GC-02-001-1-01
CTAACGCTCCGGGGGGCTCCCGTTCTAA
23._GC-02-001-1-01
CTAACGCTCCGGGGGGCTCCCGTTCTAA
24._GC-02-001-1-01
CTAACGCTCCGGGGGGCTCCCGTTCTAA
25._PA_107_[PER]
CTAACGCTCCGGGGGGCTCCCGTTCTAA
26._PA_107_[PER]
CTAACG__CCGGGGGGCTCCCGTTCTAA
27._PA_107_[PER]
CTAACGCTCCGGGGGGCTCCCGTTCTAA
28._PA_107_[PER]
CTAACGCTCCGGGGGGCTCCCGTTCTAA
29._PA_107_[PER]
CTAACGCTCCGGGGGGCTCCCGTTCTAA
30._PA_107_[PER]
CTAACGCTCCGGGGGGCTCCCGTTCTAA
31._GC-02-001-1-01
CTAACGCTCCGGGGGGCTCCCGTTCTAA
32._GC-02-001-1-01
CTAACGCTCCGGGGGGCTCCCGTTCTAA
33._GC-08-111-3-10
CTAACGCTCCGGGGGGCTCCCGTTCTAA
34._GC-08-111-3-10
CTAACGCTCCGGGGGGCTCCCGTTCTAA
35._GC-08-111-3-10
CTAACG__CCGGGGGGCTCCCGTTCTAA
36._GC-02-001-1-01
CTAACGCTCCGGGGGGCTCCCGTTCTAA
37._GC-02-001-1-01
CTAACGCTCCGGGGGGCTCCCGTTCTAA
38._PA_107_[PER]
CTAACGCTCCGGGGGGCTCCCGTTCTAA
39._PA_107_[PER]
CTAACGCTCCGGGGGGCTCCCGTTCTAA
40._PA_107_[PER]
CTATCGCTCCGGGGGGCTCCCGTTCTAA
41._GC-08-111-3-10
CTATCGCTCCGGGGGGCTCCCGTTCTAA
42._PA_107_[PER]
CTAACGCTCCGGGGAACTCCCGTTCTAA
43._PA_107_[PER]
CTAACGCTCCGGGGAACTCCCGTTCTAA
44._RUQ_1728
__________GGGGAA__CCCG____AA
45._RUQ_1728
AGAACGAGGGCCCC__AGCCCGAA__AA
46._MITC-000340
AGAACGAGGGCCCC__AGCCCGAA__AA
 29 30 31 32 33 34 35 36 37 38 39    
_Input profile
GGGGAACCAGCCAAGTACATGGX_XX_XX_X
1._PA_107_[PER]
GGGGAACCAGCCAAGTACATGGX_XX_XX_X
2._PA_107_[PER]
GGGGAACCAGCCAAGTACATGGX_XX_XX_X
3._PA_107_[PER]
GGGGAACCAGCCAAGTACATGGX_XX_XX_X
4._PA_107_[PER]
GGGGAACCAGCCAAGTACATGGX_XX_XX_X
5._PA_107_[PER]
GGGGAACCAGCCAAGTACATGGX_XX_XX_X
6._PA_107_[PER]
GGGGAACCAGCCAAGTACATGGX_XX_XX_X
7._PA_107_[PER]
GGGGAACCAGCCAAGTACATGGX_XX_XX_X
8._PA_107_[PER]
GGGGAACCAGCCAAGTACATGGX_XX_XX_X
9._PA_107_[PER]
GGGGAACCAGCCAAGTACATGGX_XX_XX_X
10._PA_107_[PER]
GGGGAACCAGCCAAGTACATGGX_XX_XX_X
11._PA_107_[PER]
GGGGAACCAGCCAAGTACATGGX_XX_XX_X
12._GC-02-001-1-01
GGGGAACCAGCCAAGTACATGGX_XX_XX_X
13._GC-02-001-1-01
GGGGAACCAGCCAAGTACATGGX_XX_XX_X
14._GC-02-001-1-01
GGGGAACCAGCCAAGTACATGGX_XX_XX_X
15._GC-08-111-3-10
GGGGAACCAGCCAAGTACATGGX_XX_XX_X
16._GC-08-111-3-10
GGGGAACCAGCCAAGTACATGGX_XX_XX_X
17._GC-02-001-1-01
GGGGAACCAGCCAAGTACATGGX_XX_XX_X
18._GC-02-001-1-01
GGGGAACCAGCCAAGTACATGGX_XX_XX_X
19._GC-02-001-1-01
GGGGAACCAGCCAAGTACATGGX_XX_XX_X
20._GC-02-001-1-01
GGGGAACCAGCCAAGTACATGGX_XX_XX_X
21._GC-02-001-1-01
GGGGAACCAGCCAAGTACATGGX_XX_XX_X
22._GC-02-001-1-01
GGGGAACCAGCCAAGTACATGGX_XX_XX_X
23._GC-02-001-1-01
GGGGAACCAGCCAAGTACATGGX_XX_XX_X
24._GC-02-001-1-01
GGGGAACCAGCCAAGTACATGGX_XX_XX_X
25._PA_107_[PER]
GGGGAACCAGCCAAGTACATGGX_XX_XX_X
26._PA_107_[PER]
GGGGAACCAGCCAAGTACATGGX_XX_XX_X
27._PA_107_[PER]
GGGGAACCAGCCAA__ACATGGX_XX_XX_X
28._PA_107_[PER]
GGGGAACCAGCCAAGTACATGGX_XX_XX_X
29._PA_107_[PER]
GGGGAACCAGCCAAGTACATGGX_XX_XX_X
30._PA_107_[PER]
GGGGAACCAGCCAAGTACATGGX_XX_XX_X
31._GC-02-001-1-01
GGGGAACCAGCCAAGTACATGGX_XX_XX_X
32._GC-02-001-1-01
GGGGAACCAGCCAA__ACATGGX_XX_XX_X
33._GC-08-111-3-10
GGGGAACCAGCC__GTACATGGX_XX_XX_X
34._GC-08-111-3-10
GGGGAACCAGCC__GTACATGGX_XX_XX_X
35._GC-08-111-3-10
GGGGAACCAGCCAAGTACATGGX_XX_XX_X
36._GC-02-001-1-01
GGGGAACCAGCCAAGTACATGGX_XX_XX_X
37._GC-02-001-1-01
GGGGAACCAGCCAAGTACATGGX_XX_XX_X
38._PA_107_[PER]
GGGGAACCAGCC__GTACATGGX_XX_XX_X
39._PA_107_[PER]
GGGGAACCAGCC__GTACATGGX_XX_XX_X
40._PA_107_[PER]
GGGGAACCAGCC__GTACATGGX_XX_XX_X
41._GC-08-111-3-10
GGGGAACCAGCC__GTACATGGX_XX_XX_X
42._PA_107_[PER]
GGGGAACCAGCCACGTACATGGX_XX_XX_X
43._PA_107_[PER]
GGGGAACCAGCCACGTACATGGX_XX_XX_X
44._RUQ_1728
________AG______AC____X_XX_XX_X
45._RUQ_1728
__GGAAGGAGGGACACACATGGX_XX_XX_X
46._MITC-000340
__GGAAGGAGGGACACACATGGX_XX_XX_X

Input profile: PA_107_[PER]

 
 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2101 7
 Dapeng Zhang, 2016

1._PA_107_[PER]

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2101 10
 Dapeng Zhang, 2016

2._PA_107_[PER]

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2101 4 > FP
 Dapeng Zhang, 2016

3._PA_107_[PER]

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2101 14 > F
 Dapeng Zhang, 2016

4._PA_107_[PER]

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2101 14 > F
 Dapeng Zhang, 2016

5._PA_107_[PER]

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2101 1 > FP
 Dapeng Zhang, 2016

6._PA_107_[PER]

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2101 16
 Dapeng Zhang, 2016

7._PA_107_[PER]

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2101 15
 Dapeng Zhang, 2016

8._PA_107_[PER]

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2101 11
 Dapeng Zhang, 2016

9._PA_107_[PER]

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8310 10
 Dapeng Zhang, 2016

10._PA_107_[PER]

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2101 9
 Dapeng Zhang, 2016

11._PA_107_[PER]

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2101 2
 Dapeng Zhang, 2016

12._PA_107_[PER] GC-02-001-1-01

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

13._PA_107_[PER] GC-02-001-1-01

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

14._PA_107_[PER] GC-02-001-1-01

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

15._PA_107_[PER] GC-08-111-3-10

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

16._PA_107_[PER] GC-08-111-3-10

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP1
 Mars, 2018

17._PA_107_[PER] GC-02-001-1-01

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

18._PA_107_[PER] GC-02-001-1-01

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

19._PA_107_[PER] GC-02-001-1-01

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

20._PA_107_[PER] GC-02-001-1-01

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

21._PA_107_[PER] GC-02-001-1-01

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

22._PA_107_[PER] GC-02-001-1-01

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

23._PA_107_[PER] GC-02-001-1-01

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

24._PA_107_[PER] GC-02-001-1-01

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

25._PA_107_[PER]

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8310 4 > FP
 Dapeng Zhang, 2016

26._PA_107_[PER]

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8310 8
 Dapeng Zhang, 2016

27._PA_107_[PER]

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2101 12
 Dapeng Zhang, 2016

28._PA_107_[PER]

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2101 8
 Dapeng Zhang, 2016

29._PA_107_[PER]

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2101 5
 Dapeng Zhang, 2016

30._PA_107_[PER]

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2101 3
 Dapeng Zhang, 2016

31._PA_107_[PER] GC-02-001-1-01

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

32._PA_107_[PER] GC-02-001-1-01

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

33._PA_107_[PER] GC-08-111-3-10

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

34._PA_107_[PER] GC-08-111-3-10

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

35._PA_107_[PER] GC-08-111-3-10

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

36._PA_107_[PER] GC-02-001-1-01

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

37._PA_107_[PER] GC-02-001-1-01

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

38._PA_107_[PER]

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8310 14
 Dapeng Zhang, 2016

39._PA_107_[PER]

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8310 13
 Dapeng Zhang, 2016

40._PA_107_[PER]

98.7 %
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8310 7
 Dapeng Zhang, 2016

41._PA_107_[PER] GC-08-111-3-10

98.7 %
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

42._PA_107_[PER]

96.2 %
39 shared markers

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Malaysian Cocoa Board (MCB), Malaysia
Location: Plot 90 C0213 2B
 Dapeng Zhang, 2016

43._PA_107_[PER]

96.2 %
39 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 284
 Dapeng Zhang, 2016

44._PA_107_[PER] RUQ_1728

92.3 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 
View Data
Par
0.847 Sca
0.137

45._PA_107_[PER] RUQ_1728

51.5 %
34 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

46._PA_107_[PER] MITC-000340

51.5 %
34 shared markers

 View  View all  Clone  Any
USDA-SHRS, United States of America
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP150 37TcSNP144 38TcSNP32 39TcSNP25