SNP Profiles of PA 107   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
1._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
2._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
3._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
4._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
5._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
6._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
7._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
8._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
9._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
10._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
11._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
12._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
13._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
14._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
15._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
16._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
17._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
18._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
19._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
20._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
21._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
22._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
23._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
24._PA_107_[PER]___
CCAGCGTTTTCCTT__CCCCAAAGCCAA
25._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
26._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCCCAAAGCC__
27._PA_107_[PER]___
CCAGCGTTTTCCTTTTCC__AAAGCCAA
28._PA_107_[PER]___
CCAGCGTTTTCCTTTTCC__AAAGCCAA
29._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
30._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
31._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
32._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
33._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
34._PA_107_[PER]___
CCAGCGTTTTCCTT__CCCCAAAGCCAA
35._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
36._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCCCAAAGCC__
37._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
38._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
39._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
40._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
41._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
42._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
43._PA_107_[PER]___
CCAGCGTTTTCCTTTTCCCCAAAGCCAA
44._PA_107_[PER]___
____CG________TT__CC__AG__AA
45._PA_107_[PER]___
GGAGCGAAAACCAAAA____AAAGGGAA
46._PA_107_[PER]___
GGAGCGAAAACCAAAA____AAAGGGAA
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
CTAACGCTCCGGGGGGCTCCCGTTCTAA
1._PA_107_[PER]___
CTAACGCTCCGGGGGGCTCCCGTTCTAA
2._PA_107_[PER]___
CTAACGCTCCGGGGGGCTCCCGTTCTAA
3._PA_107_[PER]___
CTAACGCTCCGGGGGGCTCCCGTTCTAA
4._PA_107_[PER]___
CTAACGCTCCGGGGGGCTCCCGTTCTAA
5._PA_107_[PER]___
CTAACGCTCCGGGGGGCTCCCGTTCTAA
6._PA_107_[PER]___
CTAACGCTCCGGGGGGCTCCCGTTCTAA
7._PA_107_[PER]___
CTAACGCTCCGGGGGGCTCCCGTTCTAA
8._PA_107_[PER]___
CTAACGCTCCGGGGGGCTCCCGTTCTAA
9._PA_107_[PER]___
CTAACGCTCCGGGGGGCTCCCGTTCTAA
10._PA_107_[PER]___
CTAACGCTCCGGGGGGCTCCCGTTCTAA
11._PA_107_[PER]___
CTAACGCTCCGGGGGGCTCCCGTTCTAA
12._PA_107_[PER]___
CTAACGCTCCGGGGGGCTCCCGTTCTAA
13._PA_107_[PER]___
CTAACGCTCCGGGGGGCTCCCGTTCTAA
14._PA_107_[PER]___
CTAACGCTCCGGGGGGCTCCCGTTCTAA
15._PA_107_[PER]___
CTAACGCTCCGGGGGGCTCCCGTTCTAA
16._PA_107_[PER]___
CTAACGCTCCGGGGGGCTCCCGTTCTAA
17._PA_107_[PER]___
CTAACGCTCCGGGGGGCTCCCGTTCTAA
18._PA_107_[PER]___
CTAACGCTCCGGGGGGCTCCCGTTCTAA
19._PA_107_[PER]___
CTAACGCTCCGGGGGGCTCCCGTTCTAA
20._PA_107_[PER]___
CTAACGCTCCGGGGGGCTCCCGTTCTAA
21._PA_107_[PER]___
CTAACGCTCCGGGGGGCTCCCGTTCTAA
22._PA_107_[PER]___
CTAACGCTCCGGGGGGCTCCCGTTCTAA
23._PA_107_[PER]___
CTAACG__CCGGGGGGCTCCCGTTCTAA
24._PA_107_[PER]___
CTAACGCTCCGGGGGGCTCCCGTTCTAA
25._PA_107_[PER]___
CTAACGCTCCGGGGGGCTCCCGTTCTAA
26._PA_107_[PER]___
CTAACGCTCCGGGGGGCTCCCGTTCTAA
27._PA_107_[PER]___
CTAACGCTCCGGGGGGCTCCCGTTCTAA
28._PA_107_[PER]___
CTAACGCTCCGGGGGGCTCCCGTTCTAA
29._PA_107_[PER]___
CTAACGCTCCGGGGGGCTCCCGTTCTAA
30._PA_107_[PER]___
CTAACGCTCCGGGGGGCTCCCGTTCTAA
31._PA_107_[PER]___
CTAACGCTCCGGGGGGCTCCCGTTCTAA
32._PA_107_[PER]___
CTAACG__CCGGGGGGCTCCCGTTCTAA
33._PA_107_[PER]___
CTAACGCTCCGGGGGGCTCCCGTTCTAA
34._PA_107_[PER]___
CTAACGCTCCGGGGGGCTCCCGTTCTAA
35._PA_107_[PER]___
CTAACGCTCCGGGGGGCTCCCGTTCTAA
36._PA_107_[PER]___
CTAACGCTCCGGGGGGCTCCCGTTCTAA
37._PA_107_[PER]___
CTAACGCTCCGGGGGGCTCCCGTTCTAA
38._PA_107_[PER]___
CTAACGCTCCGGGGGGCTCCCGTTCTAA
39._PA_107_[PER]___
CTAACGCTCCGGGGGGCTCCCGTTCTAA
40._PA_107_[PER]___
CTATCGCTCCGGGGGGCTCCCGTTCTAA
41._PA_107_[PER]___
CTATCGCTCCGGGGGGCTCCCGTTCTAA
42._PA_107_[PER]___
CTAACGCTCCGGGGAACTCCCGTTCTAA
43._PA_107_[PER]___
CTAACGCTCCGGGGAACTCCCGTTCTAA
44._PA_107_[PER]___
__________GGGGAA__CCCG____AA
45._PA_107_[PER]___
AGAACGAGGGCCCC__AGCCCGAA__AA
46._PA_107_[PER]___
AGAACGAGGGCCCC__AGCCCGAA__AA
 29 30 31 32 33 34 35 36 37 38 39 40   
_Input profile
GGGGAACCAGCCAACTGTACATGGX_XX_X
1._PA_107_[PER]___
GGGGAACCAGCCAACTGTACATGGX_XX_X
2._PA_107_[PER]___
GGGGAACCAGCCAACTGTACATGGX_XX_X
3._PA_107_[PER]___
GGGGAACCAGCCAACTGTACATGGX_XX_X
4._PA_107_[PER]___
GGGGAACCAGCCAACTGTACATGGX_XX_X
5._PA_107_[PER]___
GGGGAACCAGCCAACTGTACATGGX_XX_X
6._PA_107_[PER]___
GGGGAACCAGCCAACTGTACATGGX_XX_X
7._PA_107_[PER]___
GGGGAACCAGCCAACTGTACATGGX_XX_X
8._PA_107_[PER]___
GGGGAACCAGCCAACTGTACATGGX_XX_X
9._PA_107_[PER]___
GGGGAACCAGCCAACTGTACATGGX_XX_X
10._PA_107_[PER]___
GGGGAACCAGCCAACTGTACATGGX_XX_X
11._PA_107_[PER]___
GGGGAACCAGCCAACTGTACATGGX_XX_X
12._PA_107_[PER]___
GGGGAACCAGCCAACTGTACATGGX_XX_X
13._PA_107_[PER]___
GGGGAACCAGCCAACTGTACATGGX_XX_X
14._PA_107_[PER]___
GGGGAACCAGCCAACTGTACATGGX_XX_X
15._PA_107_[PER]___
GGGGAACCAGCCAACTGTACATGGX_XX_X
16._PA_107_[PER]___
GGGGAACCAGCCAACTGTACATGGX_XX_X
17._PA_107_[PER]___
GGGGAACCAGCCAACTGTACATGGX_XX_X
18._PA_107_[PER]___
GGGGAACCAGCCAACTGTACATGGX_XX_X
19._PA_107_[PER]___
GGGGAACCAGCCAACTGTACATGGX_XX_X
20._PA_107_[PER]___
GGGGAACCAGCCAACTGTACATGGX_XX_X
21._PA_107_[PER]___
GGGGAACCAGCCAACTGTACATGGX_XX_X
22._PA_107_[PER]___
GGGGAACCAGCCAACT__ACATGGX_XX_X
23._PA_107_[PER]___
GGGGAACCAGCCAACTGTACATGGX_XX_X
24._PA_107_[PER]___
GGGGAACCAGCCAACTGTACATGGX_XX_X
25._PA_107_[PER]___
GGGGAACCAGCCAA__GTACATGGX_XX_X
26._PA_107_[PER]___
GGGGAACCAGCCAACTGTACATGGX_XX_X
27._PA_107_[PER]___
GGGGAACCAGCCAACTGTACATGGX_XX_X
28._PA_107_[PER]___
GGGGAACCAGCCAACTGTACATGGX_XX_X
29._PA_107_[PER]___
GGGGAACCAGCCAACT__ACATGGX_XX_X
30._PA_107_[PER]___
GGGGAACCAGCC__CTGTACATGGX_XX_X
31._PA_107_[PER]___
GGGGAACCAGCC__CTGTACATGGX_XX_X
32._PA_107_[PER]___
GGGGAACCAGCCAACTGTACATGGX_XX_X
33._PA_107_[PER]___
GGGGAACCAGCCAA__GTACATGGX_XX_X
34._PA_107_[PER]___
GGGGAACCAGCCAACTGTACATGGX_XX_X
35._PA_107_[PER]___
GGGGAACCAGCCAA__GTACATGGX_XX_X
36._PA_107_[PER]___
GGGGAACCAGCCAACTGTACATGGX_XX_X
37._PA_107_[PER]___
GGGGAACCAGCCAA__GTACATGGX_XX_X
38._PA_107_[PER]___
GGGGAACCAGCC__CTGTACATGGX_XX_X
39._PA_107_[PER]___
GGGGAACCAGCC__CTGTACATGGX_XX_X
40._PA_107_[PER]___
GGGGAACCAGCC__CTGTACATGGX_XX_X
41._PA_107_[PER]___
GGGGAACCAGCC__CTGTACATGGX_XX_X
42._PA_107_[PER]___
GGGGAACCAGCCACCTGTACATGGX_XX_X
43._PA_107_[PER]___
GGGGAACCAGCCACCTGTACATGGX_XX_X
44._PA_107_[PER]___
________AG________AC____X_XX_X
45._PA_107_[PER]___
__GGAAGGAGGGACAGACACATGGX_XX_X
46._PA_107_[PER]___
__GGAAGGAGGGACAGACACATGGX_XX_X

Input profile: PA_107_[PER]

 
Mars Center for Cocoa Science, Brazil
Location: 8310 10
 Dapeng Zhang, 2016

1._PA_107_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 2101 9
 Dapeng Zhang, 2016

2._PA_107_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 2101 4 > FP
 Dapeng Zhang, 2016

3._PA_107_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 2101 14 > F
 Dapeng Zhang, 2016

4._PA_107_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 2101 14 > F
 Dapeng Zhang, 2016

5._PA_107_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 2101 1 > FP
 Dapeng Zhang, 2016

6._PA_107_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 2101 16
 Dapeng Zhang, 2016

7._PA_107_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 2101 15
 Dapeng Zhang, 2016

8._PA_107_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 2101 11
 Dapeng Zhang, 2016

9._PA_107_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 2101 10
 Dapeng Zhang, 2016

10._PA_107_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 2101 2
 Dapeng Zhang, 2016

11._PA_107_[PER] GC-02-001-1-01

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

12._PA_107_[PER] GC-02-001-1-01

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

13._PA_107_[PER] GC-02-001-1-01

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

14._PA_107_[PER] GC-08-111-3-10

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

15._PA_107_[PER] GC-02-001-1-01

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

16._PA_107_[PER] GC-02-001-1-01

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

17._PA_107_[PER] GC-02-001-1-01

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

18._PA_107_[PER] GC-02-001-1-01

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

19._PA_107_[PER] GC-02-001-1-01

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

20._PA_107_[PER] GC-02-001-1-01

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

21._PA_107_[PER] GC-02-001-1-01

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

22._PA_107_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 2101 12
 Dapeng Zhang, 2016

23._PA_107_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8310 8
 Dapeng Zhang, 2016

24._PA_107_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 2101 8
 Dapeng Zhang, 2016

25._PA_107_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 2101 7
 Dapeng Zhang, 2016

26._PA_107_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 2101 5
 Dapeng Zhang, 2016

27._PA_107_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 2101 3
 Dapeng Zhang, 2016

28._PA_107_[PER] GC-02-001-1-01

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

29._PA_107_[PER] GC-02-001-1-01

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

30._PA_107_[PER] GC-08-111-3-10

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

31._PA_107_[PER] GC-08-111-3-10

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

32._PA_107_[PER] GC-08-111-3-10

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

33._PA_107_[PER] GC-08-111-3-10

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP1
 Mars, 2018

34._PA_107_[PER] GC-02-001-1-01

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

35._PA_107_[PER] GC-02-001-1-01

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

36._PA_107_[PER] GC-02-001-1-01

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

37._PA_107_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8310 4 > FP
 Dapeng Zhang, 2016

38._PA_107_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8310 14
 Dapeng Zhang, 2016

39._PA_107_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8310 13
 Dapeng Zhang, 2016

40._PA_107_[PER]

98.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8310 7
 Dapeng Zhang, 2016

41._PA_107_[PER] GC-08-111-3-10

98.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

42._PA_107_[PER]

96.3 %
40 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: Plot 90 C0213 2B
 Dapeng Zhang, 2016

43._PA_107_[PER]

96.3 %
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 284
 Dapeng Zhang, 2016

44._PA_107_[PER] RUQ_1728

92.3 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

45._PA_107_[PER] RUQ_1728

50 %
35 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

46._PA_107_[PER] MITC-000340

50 %
35 shared markers

USDA-SHRS, United States of America
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25