SNP Profiles of PA 150 [PER]   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CTAGGGCCTTACTTTTCCAAGGCCAGCC
1._PA_150_[PER]
CTAGGGCCTTACTTTTCCAAGGCCAGCC
2._PA_150_[PER]
CTAGGGCCTTACTTTTCCAAGGCCAGCC
3._PA_150_[PER]
CTAGGGCCTTACTTTTCCAAGGCCAGCC
4._RUQ_1731
____GG________TT____GG__AG__
5._GC-01-034-2-11
CTGGGGCCTTACCTTTCCAAAGCCAGCT
6._GC-01-034-2-11
CTGGGGCCTTACCTTTCCAAAGCCAGCT
7._PA_150_[PER]
CTGGGGCCTTACCTTTCCAAAGCCAGCT
8._PA_150_[PER]
CTGGGGCCTTACCTTTCCAAAGCCAGCT
9._PA_150_[PER]
CTGGGGCCTTACCTTTCCAAAGCCAGCT
10._PA_150_[PER]
CTGGGGCCTTACCTTTCCAAAGCCAGCT
11._GC-01-034-2-11
CTGGGGCCTTACCTTTCCAAAGCCAGCT
12._GC-01-034-2-11
CTGGGGCCTTACCTTTCCAAAGCCAGCT
13._PA_150_[PER]
CTAGCGCTCTACCCGTCTATAGCTAGCT
14._GC-01-034-2-11
CTAGCGCTCTACCCGTCTATAGCTAGCT
15._PA_150_[PER]
TTAACGTTCTACCTTTCCAAGGTTGGCT
16._GC-01-034-2-11
TTAACGTTCTACCTTTCCAAGGTTGGCT
17._PA_150_[PER]
TTAACGTTCTACCTTTCCAAGGTTGGCT
18._PA_150_[PER]
TTAACGTTCTACCTTTCCAAGGTTGGCT
19._PA_150_[PER]
TTAACGTTCTACCTTTCCAAGGTTGGCT
20._PA_150_[PER]
TTAACGTTCTACCTTTCCAAGGTTGGCT
21._GC-01-034-2-11
TTAACGTTCTACCTTTCCAAGGTTGGCT
22._GC-01-034-2-11
TTAACGTTCTACCTTTCCAAGGTTGGCT
23._GC-01-034-2-11
TTAACGTTCTACCTTTCCAAGGTTGGCT
24._GC-01-034-2-11
TTAACGTTCTACCTTTCCAAGGTTGGCT
25._PA_150_[PER]
CCAACCTTTTAATTTTCCAAGGCTAGCT
26._PA_150_[PER]
__AGCGTT__CCTTGTCC__GGCTAACT
27._PA_150_[PER]_Fld#_173_Plt#_1
AGAGCCGGAAACAAAA__AAGGGGAGGG
28._RUQ_1731
AGAGCCGGAAACAAAA__AAGGGGAGGG
29._GC-01-34-2-11
AGGGCCGGAAACAGAA__AAAGGGAGAG
30._GC-01-34-2-11
AAAACGAAAGACAGAA__AAGGAAGGAG
31._GC-01-34-2-11
AAAACGAAAGACAGAA__AAGGAAGGAG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AACCCTCCGGGGAATTACCGTTCTACAG
1._PA_150_[PER]
AACCCTCCGGGGAATTACCGTTCTACAG
2._PA_150_[PER]
AACCCTCCGGGGAATTACCGTTCTACAG
3._PA_150_[PER]
AACCCTCCGGGGAATTACCGTTCTACAG
4._RUQ_1731
________GGGGAA__ACCG____AA__
5._GC-01-034-2-11
AACCCTCCGGGGAGTTCCCGGTCCACAA
6._GC-01-034-2-11
AACCCTCCGGGGAGTTCCCGGTCCACAA
7._PA_150_[PER]
AACCCTCCGGGGAGTTCCCGGTCCACAA
8._PA_150_[PER]
AACCCTCCGGGGAGTTCCCGGTCCACAA
9._PA_150_[PER]
AACCCTCCGGGGAGTTCCCGGTCCACAA
10._PA_150_[PER]
AACCCTCCGGGGAGTTCCCGGTCCACAA
11._GC-01-034-2-11
AACCCTCCGGGGAGTTCCCGGTCCACAA
12._GC-01-034-2-11
AACCCTCCGGGGAGTTCCCGGTCCACAA
13._PA_150_[PER]
ATCCCTCTCGGGAGTTACCCGTCTACAG
14._GC-01-034-2-11
ATCCCTCTCGGGAGTTACCCGTCTACAG
15._PA_150_[PER]
AAGGTTCTGGGTGGTTAAGGTTCTACAA
16._GC-01-034-2-11
AAGGTTCTGGGTGGTTAAGGTTCTACAA
17._PA_150_[PER]
AAGGTTCTGGGTGGTTAAGGTTCTACAA
18._PA_150_[PER]
AAGGTTCTGGGTGGTTAAGGTTCTACAA
19._PA_150_[PER]
AAGGTTCTGGGTGGTTAAGGTTCTACAA
20._PA_150_[PER]
AAGGTTCTGGGTGGTTAAGGTTCTACAA
21._GC-01-034-2-11
AAGGTTCTGGGTGGTTAAGGTTCTACAA
22._GC-01-034-2-11
AAGGTTCTGGGTGGTTAAGGTTCTACAA
23._GC-01-034-2-11
AAGGTTCTGGGTGGTTAAGGTTCTACAA
24._GC-01-034-2-11
AAGGTTCTGGGTGGTTAAGGTTCTACAA
25._PA_150_[PER]
AAGGCTCTCCGGAACTAAGGGTCTCCAA
26._PA_150_[PER]
AACGCCCCCCGGGGCTACGGGGCCACAG
27._PA_150_[PER]_Fld#_173_Plt#_1
AACCAGGGCCCC__AAACCGAA__AC__
28._RUQ_1731
AACCAGGGCCCC__AAACCGAA__AC__
29._GC-01-34-2-11
AACCAGGGCCCC__AACCCGAC__AC__
30._GC-01-34-2-11
AAGGAAAGCCAC__AAAAGGAA__AC__
31._GC-01-34-2-11
AAGGAAAGCCAC__AAAAGGAA__AC__
 29 30 31 32 33 34 35 36 37 38     
_Input profile
GGAACCGGAACCGGACAAGGX_XX_XX_XX_X
1._PA_150_[PER]
GGAACCGGAACCGGACAAGGX_XX_XX_XX_X
2._PA_150_[PER]
GGAACCGGAACCGGACAAGGX_XX_XX_XX_X
3._PA_150_[PER]
GGAACCGGAACCGGACAAGGX_XX_XX_XX_X
4._RUQ_1731
______GG______AC____X_XX_XX_XX_X
5._GC-01-034-2-11
GGAACCAGAACCGGCCATGGX_XX_XX_XX_X
6._GC-01-034-2-11
GGAACCAGAACCGGCCATGGX_XX_XX_XX_X
7._PA_150_[PER]
GGAACCAGAACCGGCCATGGX_XX_XX_XX_X
8._PA_150_[PER]
GGAACCAGAACCGGCCATGGX_XX_XX_XX_X
9._PA_150_[PER]
GGAACCAGAACCGGCCATGGX_XX_XX_XX_X
10._PA_150_[PER]
GGAACCAGAACCGGCCATGGX_XX_XX_XX_X
11._GC-01-034-2-11
GGAACCAGAACCGGCCATGGX_XX_XX_XX_X
12._GC-01-034-2-11
GGAACCAGAACCGGCCATGGX_XX_XX_XX_X
13._PA_150_[PER]
GGAACCAAACCTGTAAATCGX_XX_XX_XX_X
14._GC-01-034-2-11
GGAACCAAACCTGTAAATCGX_XX_XX_XX_X
15._PA_150_[PER]
GGAACCAGAATTGTACATGGX_XX_XX_XX_X
16._GC-01-034-2-11
GGAACCAGAATTGTACATGGX_XX_XX_XX_X
17._PA_150_[PER]
GGAACCAGAATTGTACATGGX_XX_XX_XX_X
18._PA_150_[PER]
GGAACCAGAATTGTACATGGX_XX_XX_XX_X
19._PA_150_[PER]
GGAACCAGAATTGTACATGGX_XX_XX_XX_X
20._PA_150_[PER]
GGAACCAGAATTGTACATGGX_XX_XX_XX_X
21._GC-01-034-2-11
GGAACCAGAATTGTACATGGX_XX_XX_XX_X
22._GC-01-034-2-11
GGAACCAGAATTGTACATGGX_XX_XX_XX_X
23._GC-01-034-2-11
GGAACCAGAATTGTACATGGX_XX_XX_XX_X
24._GC-01-034-2-11
GGAACCAGAATTGTACATGGX_XX_XX_XX_X
25._PA_150_[PER]
GGAACTAAAACTGGACTTGGX_XX_XX_XX_X
26._PA_150_[PER]
GGAACCAAACTTGGCCTTCCX_XX_XX_XX_X
27._PA_150_[PER]_Fld#_173_Plt#_1
GGAAGGGGAA__CCACAAGGX_XX_XX_XX_X
28._RUQ_1731
GGAAGGGGAAGGCCACAAGGX_XX_XX_XX_X
29._GC-01-34-2-11
GGAAGGAGACGGCCCCATGGX_XX_XX_XX_X
30._GC-01-34-2-11
GGAAGGAGACAAACACATGGX_XX_XX_XX_X
31._GC-01-34-2-11
GGAAGGAGACAAACACATGGX_XX_XX_XX_X

Input profile: PA_150_[PER]

 
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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D679
 Dapeng Zhang, 2016

1._PA_150_[PER]

identical
38 shared markers

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Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P70 1019
 Dapeng Zhang, 2016

2._PA_150_[PER]

identical
38 shared markers

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Malaysian Cocoa Board (MCB), Malaysia
Location: Plot 1 - Row4 C0183 28
 Dapeng Zhang, 2016

3._PA_150_[PER]

identical
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 679
 Dapeng Zhang, 2016

4._PA_150_[PER] RUQ_1731

95.8 %
12 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 
View Data
Par
0.995

5._PA_150_[PER] GC-01-034-2-11

84.2 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

6._PA_150_[PER] GC-01-034-2-11

84.2 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

7._PA_150_[PER]

84.2 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1209 2
 Dapeng Zhang, 2016

8._PA_150_[PER]

84.2 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1209 3
 Dapeng Zhang, 2016

9._PA_150_[PER]

84.2 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1209 10
 Dapeng Zhang, 2016

10._PA_150_[PER]

84.2 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1209 7 > FP
 Dapeng Zhang, 2016

11._PA_150_[PER] GC-01-034-2-11

84.2 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

12._PA_150_[PER] GC-01-034-2-11

84.2 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP4
 Mars, 2018

13._PA_150_[PER]

67.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1209 5 > FP
 Dapeng Zhang, 2016

14._PA_150_[PER] GC-01-034-2-11

67.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP2
 Mars, 2018

15._PA_150_[PER]

65.8 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1209 4
 Dapeng Zhang, 2016

16._PA_150_[PER] GC-01-034-2-11

65.8 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

17._PA_150_[PER]

65.8 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1209 6
 Dapeng Zhang, 2016

18._PA_150_[PER]

65.8 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1209 14 > F
 Dapeng Zhang, 2016

19._PA_150_[PER]

65.8 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1209 16
 Dapeng Zhang, 2016

20._PA_150_[PER]

65.8 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1209 9 > FP
 Dapeng Zhang, 2016

21._PA_150_[PER] GC-01-034-2-11

65.8 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

22._PA_150_[PER] GC-01-034-2-11

65.8 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

23._PA_150_[PER] GC-01-034-2-11

65.8 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

24._PA_150_[PER] GC-01-034-2-11

65.8 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

25._PA_150_[PER]

65.8 %
38 shared markers

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Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P74 1009
 Dapeng Zhang, 2016

26._PA_150_[PER]

58.6 %
35 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria PA 150
 Dapeng Zhang, 2016

27._PA_150_[PER] PA_150_[PER]_Fld#_173_Plt#_1

51.5 %
33 shared markers

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USDA-TARS, United States of America
Location: Field: 173, Tree: 1
 Mars, 2018

28._PA_150_[PER] RUQ_1731

50 %
34 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

29._PA_150_[PER] GC-01-34-2-11

39.7 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 9, Tree: 7 > FP4
Notes: Brazil_Selections_Poss_grandparent/ (offtype, similar to offtype EET 272, parcel 3311)
 Mars, 2018

30._PA_150_[PER] GC-01-34-2-11

38.2 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 9, Tree: 5 > FP2
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

31._PA_150_[PER] GC-01-34-2-11

38.2 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 9, Tree: 14 > FP3
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1075
11TcSNP1062 12TcSNP1060 13TcSNP998 14TcSNP994 15TcSNP953
16TcSNP929 17TcSNP917 18TcSNP891 19TcSNP872 20TcSNP723
21TcSNP645 22TcSNP619 23TcSNP591 24TcSNP577 25TcSNP560
26TcSNP534 27TcSNP529 28TcSNP469 29TcSNP429 30TcSNP372
31TcSNP242 32TcSNP230 33TcSNP193 34TcSNP151 35TcSNP150
36TcSNP144 37TcSNP32 38TcSNP25