SNP Profiles of PA 150 [PER]   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CTAGGGCCTTACTTTTCCCCAAGGCCAG
1._PA_150_[PER]
CTAGGGCCTTACTTTTCCCCAAGGCCAG
2._PA_150_[PER]
CTAGGGCCTTACTTTTCCCCAAGGCCAG
3._PA_150_[PER]
CTAGGGCCTTACTTTTCC__AAGGCCAG
4._RUQ_1731
____GG________TT__CC__GG__AG
5._GC-01-034-2-11
CTGGGGCCTTACCTTTCCCCAAAGCCAG
6._GC-01-034-2-11
CTGGGGCCTTACCTTTCCCCAAAGCCAG
7._PA_150_[PER]
CTGGGGCCTTACCTTTCCCCAAAGCCAG
8._PA_150_[PER]
CTGGGGCCTTACCTTTCCCCAAAGCCAG
9._PA_150_[PER]
CTGGGGCCTTACCTTTCCCCAAAGCCAG
10._PA_150_[PER]
CTGGGGCCTTACCTTTCCCCAAAGCCAG
11._GC-01-034-2-11
CTGGGGCCTTACCTTTCCCCAAAGCCAG
12._GC-01-034-2-11
CTGGGGCCTTACCTTTCCCCAAAGCCAG
13._PA_150_[PER]
CTAGCGCTCTACCCGTCTCTATAGCTAG
14._GC-01-034-2-11
CTAGCGCTCTACCCGTCTCTATAGCTAG
15._PA_150_[PER]
CCAACCTTTTAATTTTCCCCAAGGCTAG
16._PA_150_[PER]
TTAACGTTCTACCTTTCCCTAAGGTTGG
17._GC-01-034-2-11
TTAACGTTCTACCTTTCCCTAAGGTTGG
18._PA_150_[PER]
TTAACGTTCTACCTTTCCCTAAGGTTGG
19._PA_150_[PER]
TTAACGTTCTACCTTTCCCTAAGGTTGG
20._PA_150_[PER]
TTAACGTTCTACCTTTCCCTAAGGTTGG
21._PA_150_[PER]
TTAACGTTCTACCTTTCCCTAAGGTTGG
22._GC-01-034-2-11
TTAACGTTCTACCTTTCCCTAAGGTTGG
23._GC-01-034-2-11
TTAACGTTCTACCTTTCCCTAAGGTTGG
24._GC-01-034-2-11
TTAACGTTCTACCTTTCCCTAAGGTTGG
25._GC-01-034-2-11
TTAACGTTCTACCTTTCCCTAAGGTTGG
26._PA_150_[PER]
__AGCGTT__CCTTGTCC____GGCTAA
27._PA_150_[PER]_Fld#_173_Plt#_1
AGAGCCGGAAACAAAA____AAGGGGAG
28._RUQ_1731
AGAGCCGGAAACAAAA____AAGGGGAG
29._GC-01-34-2-11
AGGGCCGGAAACAGAA____AAAGGGAG
30._GC-01-34-2-11
AAAACGAAAGACAGAA____AAGGAAGG
31._GC-01-34-2-11
AAAACGAAAGACAGAA____AAGGAAGG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
CCAACCCTCCGGGGAATTACCGTTCTAC
1._PA_150_[PER]
CCAACCCTCCGGGGAATTACCGTTCTAC
2._PA_150_[PER]
CCAACCCTCCGGGGAATTACCGTTCTAC
3._PA_150_[PER]
CCAACCCTCCGGGGAATTACCGTTCTAC
4._RUQ_1731
__________GGGGAA__ACCG____AA
5._GC-01-034-2-11
CTAACCCTCCGGGGAGTTCCCGGTCCAC
6._GC-01-034-2-11
CTAACCCTCCGGGGAGTTCCCGGTCCAC
7._PA_150_[PER]
CTAACCCTCCGGGGAGTTCCCGGTCCAC
8._PA_150_[PER]
CTAACCCTCCGGGGAGTTCCCGGTCCAC
9._PA_150_[PER]
CTAACCCTCCGGGGAGTTCCCGGTCCAC
10._PA_150_[PER]
CTAACCCTCCGGGGAGTTCCCGGTCCAC
11._GC-01-034-2-11
CTAACCCTCCGGGGAGTTCCCGGTCCAC
12._GC-01-034-2-11
CTAACCCTCCGGGGAGTTCCCGGTCCAC
13._PA_150_[PER]
CTATCCCTCTCGGGAGTTACCCGTCTAC
14._GC-01-034-2-11
CTATCCCTCTCGGGAGTTACCCGTCTAC
15._PA_150_[PER]
CTAAGGCTCTCCGGAACTAAGGGTCTCC
16._PA_150_[PER]
CTAAGGTTCTGGGTGGTTAAGGTTCTAC
17._GC-01-034-2-11
CTAAGGTTCTGGGTGGTTAAGGTTCTAC
18._PA_150_[PER]
CTAAGGTTCTGGGTGGTTAAGGTTCTAC
19._PA_150_[PER]
CTAAGGTTCTGGGTGGTTAAGGTTCTAC
20._PA_150_[PER]
CTAAGGTTCTGGGTGGTTAAGGTTCTAC
21._PA_150_[PER]
CTAAGGTTCTGGGTGGTTAAGGTTCTAC
22._GC-01-034-2-11
CTAAGGTTCTGGGTGGTTAAGGTTCTAC
23._GC-01-034-2-11
CTAAGGTTCTGGGTGGTTAAGGTTCTAC
24._GC-01-034-2-11
CTAAGGTTCTGGGTGGTTAAGGTTCTAC
25._GC-01-034-2-11
CTAAGGTTCTGGGTGGTTAAGGTTCTAC
26._PA_150_[PER]
CTAACGCCCCCCGGGGCTACGGGGCCAC
27._PA_150_[PER]_Fld#_173_Plt#_1
GGAACCAGGGCCCC__AAACCGAA__AC
28._RUQ_1731
GGAACCAGGGCCCC__AAACCGAA__AC
29._GC-01-34-2-11
AGAACCAGGGCCCC__AACCCGAC__AC
30._GC-01-34-2-11
AGAAGGAAAGCCAC__AAAAGGAA__AC
31._GC-01-34-2-11
AGAAGGAAAGCCAC__AAAAGGAA__AC
 29 30 31 32 33 34 35 36 37 38 39 40   
_Input profile
AGGGAACCGGCCAACCGGACAAGGX_XX_X
1._PA_150_[PER]
AGGGAACCGGCCAACCGGACAAGGX_XX_X
2._PA_150_[PER]
AGGGAACCGGCCAACCGGACAAGGX_XX_X
3._PA_150_[PER]
AGGGAACCGG__AACCGGACAAGGX_XX_X
4._RUQ_1731
________GG________AC____X_XX_X
5._GC-01-034-2-11
AAGGAACCAGCCAACCGGCCATGGX_XX_X
6._GC-01-034-2-11
AAGGAACCAGCCAACCGGCCATGGX_XX_X
7._PA_150_[PER]
AAGGAACCAGCCAACCGGCCATGGX_XX_X
8._PA_150_[PER]
AAGGAACCAGCCAACCGGCCATGGX_XX_X
9._PA_150_[PER]
AAGGAACCAGCCAACCGGCCATGGX_XX_X
10._PA_150_[PER]
AAGGAACCAGCCAACCGGCCATGGX_XX_X
11._GC-01-034-2-11
AAGGAACCAGCCAACCGGCCATGGX_XX_X
12._GC-01-034-2-11
AAGGAACCAGCCAACCGGCCATGGX_XX_X
13._PA_150_[PER]
AGGGAACCAACCACCTGTAAATCGX_XX_X
14._GC-01-034-2-11
AGGGAACCAACCACCTGTAAATCGX_XX_X
15._PA_150_[PER]
AAGGAACTAACCAACTGGACTTGGX_XX_X
16._PA_150_[PER]
AAGGAACCAGCGAATTGTACATGGX_XX_X
17._GC-01-034-2-11
AAGGAACCAGCGAATTGTACATGGX_XX_X
18._PA_150_[PER]
AAGGAACCAGCGAATTGTACATGGX_XX_X
19._PA_150_[PER]
AAGGAACCAGCGAATTGTACATGGX_XX_X
20._PA_150_[PER]
AAGGAACCAGCGAATTGTACATGGX_XX_X
21._PA_150_[PER]
AAGGAACCAGCGAATTGTACATGGX_XX_X
22._GC-01-034-2-11
AAGGAACCAGCGAATTGTACATGGX_XX_X
23._GC-01-034-2-11
AAGGAACCAGCGAATTGTACATGGX_XX_X
24._GC-01-034-2-11
AAGGAACCAGCGAATTGTACATGGX_XX_X
25._GC-01-034-2-11
AAGGAACCAGCGAATTGTACATGGX_XX_X
26._PA_150_[PER]
AGGGAACCAA__ACTTGGCCTTCCX_XX_X
27._PA_150_[PER]_Fld#_173_Plt#_1
__GGAAGGGGGGAA__CCACAAGGX_XX_X
28._RUQ_1731
__GGAAGGGGGGAAGGCCACAAGGX_XX_X
29._GC-01-34-2-11
__GGAAGGAGGGACGGCCCCATGGX_XX_X
30._GC-01-34-2-11
__GGAAGGAGCGACAAACACATGGX_XX_X
31._GC-01-34-2-11
__GGAAGGAGCGACAAACACATGGX_XX_X

Input profile: PA_150_[PER]

 
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Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P70 1019
 Dapeng Zhang, 2016

1._PA_150_[PER]

identical
40 shared markers

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Malaysian Cocoa Board (MCB), Malaysia
Location: Plot 1 - Row4 C0183 28
 Dapeng Zhang, 2016

2._PA_150_[PER]

identical
40 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 679
 Dapeng Zhang, 2016

3._PA_150_[PER]

identical
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D679
 Dapeng Zhang, 2016

4._PA_150_[PER] RUQ_1731

96.2 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 
View Data
Par
0.995

5._PA_150_[PER] GC-01-034-2-11

85 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

6._PA_150_[PER] GC-01-034-2-11

85 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

7._PA_150_[PER]

85 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1209 2
 Dapeng Zhang, 2016

8._PA_150_[PER]

85 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1209 3
 Dapeng Zhang, 2016

9._PA_150_[PER]

85 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1209 10
 Dapeng Zhang, 2016

10._PA_150_[PER]

85 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1209 7 > FP
 Dapeng Zhang, 2016

11._PA_150_[PER] GC-01-034-2-11

85 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP4
 Mars, 2018

12._PA_150_[PER] GC-01-034-2-11

85 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

13._PA_150_[PER]

67.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1209 5 > FP
 Dapeng Zhang, 2016

14._PA_150_[PER] GC-01-034-2-11

67.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP2
 Mars, 2018

15._PA_150_[PER]

67.5 %
40 shared markers

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Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P74 1009
 Dapeng Zhang, 2016

16._PA_150_[PER]

65 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1209 4
 Dapeng Zhang, 2016

17._PA_150_[PER] GC-01-034-2-11

65 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

18._PA_150_[PER]

65 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1209 6
 Dapeng Zhang, 2016

19._PA_150_[PER]

65 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1209 14 > F
 Dapeng Zhang, 2016

20._PA_150_[PER]

65 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1209 16
 Dapeng Zhang, 2016

21._PA_150_[PER]

65 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1209 9 > FP
 Dapeng Zhang, 2016

22._PA_150_[PER] GC-01-034-2-11

65 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

23._PA_150_[PER] GC-01-034-2-11

65 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

24._PA_150_[PER] GC-01-034-2-11

65 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

25._PA_150_[PER] GC-01-034-2-11

65 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

26._PA_150_[PER]

58.6 %
35 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria PA 150
 Dapeng Zhang, 2016

27._PA_150_[PER] PA_150_[PER]_Fld#_173_Plt#_1

50 %
34 shared markers

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USDA-TARS, United States of America
Location: Field: 173, Tree: 1
 Mars, 2018

28._PA_150_[PER] RUQ_1731

48.6 %
35 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

29._PA_150_[PER] GC-01-34-2-11

38.6 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 9, Tree: 7 > FP4
Notes: Brazil_Selections_Poss_grandparent/ (offtype, similar to offtype EET 272, parcel 3311)
 Mars, 2018

30._PA_150_[PER] GC-01-34-2-11

38.6 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 9, Tree: 5 > FP2
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

31._PA_150_[PER] GC-01-34-2-11

38.6 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 9, Tree: 14 > FP3
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25