SNP Profiles of PA 150   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
TTAACGTTCTACCTTTCCCTAAGGTTGG
1._PA_150_[PER]___
TTAACGTTCTACCTTTCCCTAAGGTTGG
2._PA_150_[PER]___
TTAACGTTCTACCTTTCCCTAAGGTTGG
3._PA_150_[PER]___
TTAACGTTCTACCTTTCCCTAAGGTTGG
4._PA_150_[PER]___
TTAACGTTCTACCTTTCCCTAAGGTTGG
5._PA_150_[PER]___
TTAACGTTCTACCTTTCCCTAAGGTTGG
6._PA_150_[PER]___
TTAACGTTCTACCTTTCCCTAAGGTTGG
7._PA_150_[PER]___
TTAACGTTCTACCTTTCCCTAAGGTTGG
8._PA_150_[PER]___
TTAACGTTCTACCTTTCCCTAAGGTTGG
9._PA_150_[PER]___
TTAACGTTCTACCTTTCCCTAAGGTTGG
10._PA_150_[PER]___
CCAACCTTTTAATTTTCCCCAAGGCTAG
11._PA_150_[PER]___
CTAGGGCCTTACTTTTCC__AAGGCCAG
12._PA_150_[PER]___
CTGGGGCCTTACCTTTCCCCAAAGCCAG
13._PA_150_[PER]___
CTGGGGCCTTACCTTTCCCCAAAGCCAG
14._PA_150_[PER]___
CTGGGGCCTTACCTTTCCCCAAAGCCAG
15._PA_150_[PER]___
CTGGGGCCTTACCTTTCCCCAAAGCCAG
16._PA_150_[PER]___
CTGGGGCCTTACCTTTCCCCAAAGCCAG
17._PA_150_[PER]___
CTGGGGCCTTACCTTTCCCCAAAGCCAG
18._PA_150_[PER]___
CTAGCGCTCTACCCGTCTCTATAGCTAG
19._PA_150_[PER]___
CTAGCGCTCTACCCGTCTCTATAGCTAG
20._PA_150_[PER]___
CTGGGGCCTTACCTTTCCCCAAAGCCAG
21._PA_150_[PER]___
CTGGGGCCTTACCTTTCCCCAAAGCCAG
22._PA_150_[PER]___
CTAGGGCCTTACTTTTCCCCAAGGCCAG
23._PA_150_[PER]___
CTAGGGCCTTACTTTTCCCCAAGGCCAG
24._PA_150_[PER]___
CTAGGGCCTTACTTTTCCCCAAGGCCAG
25._PA_150_[PER]___
____GG________TT__CC__GG__AG
26._PA_150_[PER]___
__AGCGTT__CCTTGTCC____GGCTAA
27._PA_150_[PER]___
AAAACGAAAGACAGAA____AAGGAAGG
28._PA_150_[PER]___
AAAACGAAAGACAGAA____AAGGAAGG
29._PA_150_[PER]___
AGAGCCGGAAACAAAA____AAGGGGAG
30._PA_150_[PER]___
AGAGCCGGAAACAAAA____AAGGGGAG
31._PA_150_[PER]___
AGGGCCGGAAACAGAA____AAAGGGAG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
CTAAGGTTCTGGGTGGTTAAGGTTCTAC
1._PA_150_[PER]___
CTAAGGTTCTGGGTGGTTAAGGTTCTAC
2._PA_150_[PER]___
CTAAGGTTCTGGGTGGTTAAGGTTCTAC
3._PA_150_[PER]___
CTAAGGTTCTGGGTGGTTAAGGTTCTAC
4._PA_150_[PER]___
CTAAGGTTCTGGGTGGTTAAGGTTCTAC
5._PA_150_[PER]___
CTAAGGTTCTGGGTGGTTAAGGTTCTAC
6._PA_150_[PER]___
CTAAGGTTCTGGGTGGTTAAGGTTCTAC
7._PA_150_[PER]___
CTAAGGTTCTGGGTGGTTAAGGTTCTAC
8._PA_150_[PER]___
CTAAGGTTCTGGGTGGTTAAGGTTCTAC
9._PA_150_[PER]___
CTAAGGTTCTGGGTGGTTAAGGTTCTAC
10._PA_150_[PER]___
CTAAGGCTCTCCGGAACTAAGGGTCTCC
11._PA_150_[PER]___
CCAACCCTCCGGGGAATTACCGTTCTAC
12._PA_150_[PER]___
CTAACCCTCCGGGGAGTTCCCGGTCCAC
13._PA_150_[PER]___
CTAACCCTCCGGGGAGTTCCCGGTCCAC
14._PA_150_[PER]___
CTAACCCTCCGGGGAGTTCCCGGTCCAC
15._PA_150_[PER]___
CTAACCCTCCGGGGAGTTCCCGGTCCAC
16._PA_150_[PER]___
CTAACCCTCCGGGGAGTTCCCGGTCCAC
17._PA_150_[PER]___
CTAACCCTCCGGGGAGTTCCCGGTCCAC
18._PA_150_[PER]___
CTATCCCTCTCGGGAGTTACCCGTCTAC
19._PA_150_[PER]___
CTATCCCTCTCGGGAGTTACCCGTCTAC
20._PA_150_[PER]___
CTAACCCTCCGGGGAGTTCCCGGTCCAC
21._PA_150_[PER]___
CTAACCCTCCGGGGAGTTCCCGGTCCAC
22._PA_150_[PER]___
CCAACCCTCCGGGGAATTACCGTTCTAC
23._PA_150_[PER]___
CCAACCCTCCGGGGAATTACCGTTCTAC
24._PA_150_[PER]___
CCAACCCTCCGGGGAATTACCGTTCTAC
25._PA_150_[PER]___
__________GGGGAA__ACCG____AA
26._PA_150_[PER]___
CTAACGCCCCCCGGGGCTACGGGGCCAC
27._PA_150_[PER]___
AGAAGGAAAGCCAC__AAAAGGAA__AC
28._PA_150_[PER]___
AGAAGGAAAGCCAC__AAAAGGAA__AC
29._PA_150_[PER]___
GGAACCAGGGCCCC__AAACCGAA__AC
30._PA_150_[PER]___
GGAACCAGGGCCCC__AAACCGAA__AC
31._PA_150_[PER]___
AGAACCAGGGCCCC__AACCCGAC__AC
 29 30 31 32 33 34 35 36 37 38 39 40   
_Input profile
AAGGAACCAGCGAATTGTACATGGX_XX_X
1._PA_150_[PER]___
AAGGAACCAGCGAATTGTACATGGX_XX_X
2._PA_150_[PER]___
AAGGAACCAGCGAATTGTACATGGX_XX_X
3._PA_150_[PER]___
AAGGAACCAGCGAATTGTACATGGX_XX_X
4._PA_150_[PER]___
AAGGAACCAGCGAATTGTACATGGX_XX_X
5._PA_150_[PER]___
AAGGAACCAGCGAATTGTACATGGX_XX_X
6._PA_150_[PER]___
AAGGAACCAGCGAATTGTACATGGX_XX_X
7._PA_150_[PER]___
AAGGAACCAGCGAATTGTACATGGX_XX_X
8._PA_150_[PER]___
AAGGAACCAGCGAATTGTACATGGX_XX_X
9._PA_150_[PER]___
AAGGAACCAGCGAATTGTACATGGX_XX_X
10._PA_150_[PER]___
AAGGAACTAACCAACTGGACTTGGX_XX_X
11._PA_150_[PER]___
AGGGAACCGG__AACCGGACAAGGX_XX_X
12._PA_150_[PER]___
AAGGAACCAGCCAACCGGCCATGGX_XX_X
13._PA_150_[PER]___
AAGGAACCAGCCAACCGGCCATGGX_XX_X
14._PA_150_[PER]___
AAGGAACCAGCCAACCGGCCATGGX_XX_X
15._PA_150_[PER]___
AAGGAACCAGCCAACCGGCCATGGX_XX_X
16._PA_150_[PER]___
AAGGAACCAGCCAACCGGCCATGGX_XX_X
17._PA_150_[PER]___
AAGGAACCAGCCAACCGGCCATGGX_XX_X
18._PA_150_[PER]___
AGGGAACCAACCACCTGTAAATCGX_XX_X
19._PA_150_[PER]___
AGGGAACCAACCACCTGTAAATCGX_XX_X
20._PA_150_[PER]___
AAGGAACCAGCCAACCGGCCATGGX_XX_X
21._PA_150_[PER]___
AAGGAACCAGCCAACCGGCCATGGX_XX_X
22._PA_150_[PER]___
AGGGAACCGGCCAACCGGACAAGGX_XX_X
23._PA_150_[PER]___
AGGGAACCGGCCAACCGGACAAGGX_XX_X
24._PA_150_[PER]___
AGGGAACCGGCCAACCGGACAAGGX_XX_X
25._PA_150_[PER]___
________GG________AC____X_XX_X
26._PA_150_[PER]___
AGGGAACCAA__ACTTGGCCTTCCX_XX_X
27._PA_150_[PER]___
__GGAAGGAGCGACAAACACATGGX_XX_X
28._PA_150_[PER]___
__GGAAGGAGCGACAAACACATGGX_XX_X
29._PA_150_[PER]___
__GGAAGGGGGGAA__CCACAAGGX_XX_X
30._PA_150_[PER]___
__GGAAGGGGGGAAGGCCACAAGGX_XX_X
31._PA_150_[PER]___
__GGAAGGAGGGACGGCCCCATGGX_XX_X

Input profile: PA_150_[PER]

 
Mars Center for Cocoa Science, Brazil
Location: 1209 16
 Dapeng Zhang, 2016

1._PA_150_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1209 4
 Dapeng Zhang, 2016

2._PA_150_[PER] GC-01-034-2-11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

3._PA_150_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1209 6
 Dapeng Zhang, 2016

4._PA_150_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1209 14 > F
 Dapeng Zhang, 2016

5._PA_150_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1209 9 > FP
 Dapeng Zhang, 2016

6._PA_150_[PER] GC-01-034-2-11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

7._PA_150_[PER] GC-01-034-2-11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

8._PA_150_[PER] GC-01-034-2-11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

9._PA_150_[PER] GC-01-034-2-11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

10._PA_150_[PER]

70 %
40 shared markers

Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P74 1009
 Dapeng Zhang, 2016

11._PA_150_[PER]

65.8 %
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D679
 Dapeng Zhang, 2016

12._PA_150_[PER] GC-01-034-2-11

65 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

13._PA_150_[PER] GC-01-034-2-11

65 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

14._PA_150_[PER]

65 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1209 2
 Dapeng Zhang, 2016

15._PA_150_[PER]

65 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1209 3
 Dapeng Zhang, 2016

16._PA_150_[PER]

65 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1209 10
 Dapeng Zhang, 2016

17._PA_150_[PER]

65 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1209 7 > FP
 Dapeng Zhang, 2016

18._PA_150_[PER]

65 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1209 5 > FP
 Dapeng Zhang, 2016

19._PA_150_[PER] GC-01-034-2-11

65 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP2
 Mars, 2018

20._PA_150_[PER] GC-01-034-2-11

65 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP4
 Mars, 2018

21._PA_150_[PER] GC-01-034-2-11

65 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

22._PA_150_[PER]

65 %
40 shared markers

Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P70 1019
 Dapeng Zhang, 2016

23._PA_150_[PER]

65 %
40 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: Plot 1 - Row4 C0183 28
 Dapeng Zhang, 2016

24._PA_150_[PER]

65 %
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 679
 Dapeng Zhang, 2016

25._PA_150_[PER] RUQ_1731

61.5 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

26._PA_150_[PER]

61.4 %
35 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria PA 150
 Dapeng Zhang, 2016

27._PA_150_[PER] GC-01-34-2-11

52.9 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 9, Tree: 5 > FP2
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

28._PA_150_[PER] GC-01-34-2-11

52.9 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 9, Tree: 14 > FP3
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

29._PA_150_[PER] PA_150_[PER]_Fld#_173_Plt#_1

41.2 %
34 shared markers

USDA-TARS, United States of America
Location: Field: 173, Tree: 1
 Mars, 2018

30._PA_150_[PER] RUQ_1731

40 %
35 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

31._PA_150_[PER] GC-01-34-2-11

35.7 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 9, Tree: 7 > FP4
Notes: Brazil_Selections_Poss_grandparent/ (offtype, similar to offtype EET 272, parcel 3311)
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25