SNP Profiles of PA 150   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
TTAACGTTCTACCTTTCCCTAAGGTTGG
1._PA_150_[PER]
TTAACGTTCTACCTTTCCCTAAGGTTGG
2._GC-01-034-2-11
TTAACGTTCTACCTTTCCCTAAGGTTGG
3._PA_150_[PER]
TTAACGTTCTACCTTTCCCTAAGGTTGG
4._PA_150_[PER]
TTAACGTTCTACCTTTCCCTAAGGTTGG
5._PA_150_[PER]
TTAACGTTCTACCTTTCCCTAAGGTTGG
6._GC-01-034-2-11
TTAACGTTCTACCTTTCCCTAAGGTTGG
7._GC-01-034-2-11
TTAACGTTCTACCTTTCCCTAAGGTTGG
8._GC-01-034-2-11
TTAACGTTCTACCTTTCCCTAAGGTTGG
9._GC-01-034-2-11
TTAACGTTCTACCTTTCCCTAAGGTTGG
10._PA_150_[PER]
CCAACCTTTTAATTTTCCCCAAGGCTAG
11._PA_150_[PER]
CTAGGGCCTTACTTTTCC__AAGGCCAG
12._GC-01-034-2-11
CTGGGGCCTTACCTTTCCCCAAAGCCAG
13._GC-01-034-2-11
CTGGGGCCTTACCTTTCCCCAAAGCCAG
14._PA_150_[PER]
CTGGGGCCTTACCTTTCCCCAAAGCCAG
15._PA_150_[PER]
CTGGGGCCTTACCTTTCCCCAAAGCCAG
16._PA_150_[PER]
CTGGGGCCTTACCTTTCCCCAAAGCCAG
17._PA_150_[PER]
CTGGGGCCTTACCTTTCCCCAAAGCCAG
18._PA_150_[PER]
CTAGCGCTCTACCCGTCTCTATAGCTAG
19._GC-01-034-2-11
CTAGCGCTCTACCCGTCTCTATAGCTAG
20._GC-01-034-2-11
CTGGGGCCTTACCTTTCCCCAAAGCCAG
21._GC-01-034-2-11
CTGGGGCCTTACCTTTCCCCAAAGCCAG
22._PA_150_[PER]
CTAGGGCCTTACTTTTCCCCAAGGCCAG
23._PA_150_[PER]
CTAGGGCCTTACTTTTCCCCAAGGCCAG
24._PA_150_[PER]
CTAGGGCCTTACTTTTCCCCAAGGCCAG
25._RUQ_1731
____GG________TT__CC__GG__AG
26._PA_150_[PER]
__AGCGTT__CCTTGTCC____GGCTAA
27._GC-01-34-2-11
AAAACGAAAGACAGAA____AAGGAAGG
28._GC-01-34-2-11
AAAACGAAAGACAGAA____AAGGAAGG
29._PA_150_[PER]_Fld#_173_Plt#_1
AGAGCCGGAAACAAAA____AAGGGGAG
30._RUQ_1731
AGAGCCGGAAACAAAA____AAGGGGAG
31._GC-01-34-2-11
AGGGCCGGAAACAGAA____AAAGGGAG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
CTAAGGTTCTGGGTGGTTAAGGTTCTAC
1._PA_150_[PER]
CTAAGGTTCTGGGTGGTTAAGGTTCTAC
2._GC-01-034-2-11
CTAAGGTTCTGGGTGGTTAAGGTTCTAC
3._PA_150_[PER]
CTAAGGTTCTGGGTGGTTAAGGTTCTAC
4._PA_150_[PER]
CTAAGGTTCTGGGTGGTTAAGGTTCTAC
5._PA_150_[PER]
CTAAGGTTCTGGGTGGTTAAGGTTCTAC
6._GC-01-034-2-11
CTAAGGTTCTGGGTGGTTAAGGTTCTAC
7._GC-01-034-2-11
CTAAGGTTCTGGGTGGTTAAGGTTCTAC
8._GC-01-034-2-11
CTAAGGTTCTGGGTGGTTAAGGTTCTAC
9._GC-01-034-2-11
CTAAGGTTCTGGGTGGTTAAGGTTCTAC
10._PA_150_[PER]
CTAAGGCTCTCCGGAACTAAGGGTCTCC
11._PA_150_[PER]
CCAACCCTCCGGGGAATTACCGTTCTAC
12._GC-01-034-2-11
CTAACCCTCCGGGGAGTTCCCGGTCCAC
13._GC-01-034-2-11
CTAACCCTCCGGGGAGTTCCCGGTCCAC
14._PA_150_[PER]
CTAACCCTCCGGGGAGTTCCCGGTCCAC
15._PA_150_[PER]
CTAACCCTCCGGGGAGTTCCCGGTCCAC
16._PA_150_[PER]
CTAACCCTCCGGGGAGTTCCCGGTCCAC
17._PA_150_[PER]
CTAACCCTCCGGGGAGTTCCCGGTCCAC
18._PA_150_[PER]
CTATCCCTCTCGGGAGTTACCCGTCTAC
19._GC-01-034-2-11
CTATCCCTCTCGGGAGTTACCCGTCTAC
20._GC-01-034-2-11
CTAACCCTCCGGGGAGTTCCCGGTCCAC
21._GC-01-034-2-11
CTAACCCTCCGGGGAGTTCCCGGTCCAC
22._PA_150_[PER]
CCAACCCTCCGGGGAATTACCGTTCTAC
23._PA_150_[PER]
CCAACCCTCCGGGGAATTACCGTTCTAC
24._PA_150_[PER]
CCAACCCTCCGGGGAATTACCGTTCTAC
25._RUQ_1731
__________GGGGAA__ACCG____AA
26._PA_150_[PER]
CTAACGCCCCCCGGGGCTACGGGGCCAC
27._GC-01-34-2-11
AGAAGGAAAGCCAC__AAAAGGAA__AC
28._GC-01-34-2-11
AGAAGGAAAGCCAC__AAAAGGAA__AC
29._PA_150_[PER]_Fld#_173_Plt#_1
GGAACCAGGGCCCC__AAACCGAA__AC
30._RUQ_1731
GGAACCAGGGCCCC__AAACCGAA__AC
31._GC-01-34-2-11
AGAACCAGGGCCCC__AACCCGAC__AC
 29 30 31 32 33 34 35 36 37 38 39 40   
_Input profile
AAGGAACCAGCGAATTGTACATGGX_XX_X
1._PA_150_[PER]
AAGGAACCAGCGAATTGTACATGGX_XX_X
2._GC-01-034-2-11
AAGGAACCAGCGAATTGTACATGGX_XX_X
3._PA_150_[PER]
AAGGAACCAGCGAATTGTACATGGX_XX_X
4._PA_150_[PER]
AAGGAACCAGCGAATTGTACATGGX_XX_X
5._PA_150_[PER]
AAGGAACCAGCGAATTGTACATGGX_XX_X
6._GC-01-034-2-11
AAGGAACCAGCGAATTGTACATGGX_XX_X
7._GC-01-034-2-11
AAGGAACCAGCGAATTGTACATGGX_XX_X
8._GC-01-034-2-11
AAGGAACCAGCGAATTGTACATGGX_XX_X
9._GC-01-034-2-11
AAGGAACCAGCGAATTGTACATGGX_XX_X
10._PA_150_[PER]
AAGGAACTAACCAACTGGACTTGGX_XX_X
11._PA_150_[PER]
AGGGAACCGG__AACCGGACAAGGX_XX_X
12._GC-01-034-2-11
AAGGAACCAGCCAACCGGCCATGGX_XX_X
13._GC-01-034-2-11
AAGGAACCAGCCAACCGGCCATGGX_XX_X
14._PA_150_[PER]
AAGGAACCAGCCAACCGGCCATGGX_XX_X
15._PA_150_[PER]
AAGGAACCAGCCAACCGGCCATGGX_XX_X
16._PA_150_[PER]
AAGGAACCAGCCAACCGGCCATGGX_XX_X
17._PA_150_[PER]
AAGGAACCAGCCAACCGGCCATGGX_XX_X
18._PA_150_[PER]
AGGGAACCAACCACCTGTAAATCGX_XX_X
19._GC-01-034-2-11
AGGGAACCAACCACCTGTAAATCGX_XX_X
20._GC-01-034-2-11
AAGGAACCAGCCAACCGGCCATGGX_XX_X
21._GC-01-034-2-11
AAGGAACCAGCCAACCGGCCATGGX_XX_X
22._PA_150_[PER]
AGGGAACCGGCCAACCGGACAAGGX_XX_X
23._PA_150_[PER]
AGGGAACCGGCCAACCGGACAAGGX_XX_X
24._PA_150_[PER]
AGGGAACCGGCCAACCGGACAAGGX_XX_X
25._RUQ_1731
________GG________AC____X_XX_X
26._PA_150_[PER]
AGGGAACCAA__ACTTGGCCTTCCX_XX_X
27._GC-01-34-2-11
__GGAAGGAGCGACAAACACATGGX_XX_X
28._GC-01-34-2-11
__GGAAGGAGCGACAAACACATGGX_XX_X
29._PA_150_[PER]_Fld#_173_Plt#_1
__GGAAGGGGGGAA__CCACAAGGX_XX_X
30._RUQ_1731
__GGAAGGGGGGAAGGCCACAAGGX_XX_X
31._GC-01-34-2-11
__GGAAGGAGGGACGGCCCCATGGX_XX_X

Input profile: PA_150_[PER]

 
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Mars Center for Cocoa Science, Brazil
Location: 1209 9 > FP
 Dapeng Zhang, 2016

1._PA_150_[PER]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1209 4
 Dapeng Zhang, 2016

2._PA_150_[PER] GC-01-034-2-11

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

3._PA_150_[PER]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1209 6
 Dapeng Zhang, 2016

4._PA_150_[PER]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1209 16
 Dapeng Zhang, 2016

5._PA_150_[PER]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1209 14 > F
 Dapeng Zhang, 2016

6._PA_150_[PER] GC-01-034-2-11

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

7._PA_150_[PER] GC-01-034-2-11

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

8._PA_150_[PER] GC-01-034-2-11

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

9._PA_150_[PER] GC-01-034-2-11

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

10._PA_150_[PER]

70 %
40 shared markers

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Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P74 1009
 Dapeng Zhang, 2016

11._PA_150_[PER]

65.8 %
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D679
 Dapeng Zhang, 2016

12._PA_150_[PER] GC-01-034-2-11

65 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

13._PA_150_[PER] GC-01-034-2-11

65 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

14._PA_150_[PER]

65 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1209 2
 Dapeng Zhang, 2016

15._PA_150_[PER]

65 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1209 3
 Dapeng Zhang, 2016

16._PA_150_[PER]

65 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1209 10
 Dapeng Zhang, 2016

17._PA_150_[PER]

65 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1209 7 > FP
 Dapeng Zhang, 2016

18._PA_150_[PER]

65 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1209 5 > FP
 Dapeng Zhang, 2016

19._PA_150_[PER] GC-01-034-2-11

65 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP2
 Mars, 2018

20._PA_150_[PER] GC-01-034-2-11

65 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP4
 Mars, 2018

21._PA_150_[PER] GC-01-034-2-11

65 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

22._PA_150_[PER]

65 %
40 shared markers

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Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P70 1019
 Dapeng Zhang, 2016

23._PA_150_[PER]

65 %
40 shared markers

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Malaysian Cocoa Board (MCB), Malaysia
Location: Plot 1 - Row4 C0183 28
 Dapeng Zhang, 2016

24._PA_150_[PER]

65 %
40 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 679
 Dapeng Zhang, 2016

25._PA_150_[PER] RUQ_1731

61.5 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 
View Data
Par
0.995

26._PA_150_[PER]

61.4 %
35 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria PA 150
 Dapeng Zhang, 2016

27._PA_150_[PER] GC-01-34-2-11

52.9 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 9, Tree: 5 > FP2
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

28._PA_150_[PER] GC-01-34-2-11

52.9 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 9, Tree: 14 > FP3
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

29._PA_150_[PER] PA_150_[PER]_Fld#_173_Plt#_1

41.2 %
34 shared markers

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USDA-TARS, United States of America
Location: Field: 173, Tree: 1
 Mars, 2018

30._PA_150_[PER] RUQ_1731

40 %
35 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

31._PA_150_[PER] GC-01-34-2-11

35.7 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 9, Tree: 7 > FP4
Notes: Brazil_Selections_Poss_grandparent/ (offtype, similar to offtype EET 272, parcel 3311)
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25