SNP Profiles of OC 61 [VEN]   View Data

 Show/Hide Profiles

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
TTAAGGCTTTAACCTTCTTTAAAATTAG
1._PA_70_[PER]___
TTAAGGCTTTAACCTTCTTTAAAATTAG
2._PA_70_[PER]___
__AGGGCT______TT________CCAG
3._PA_70_[PER]___
CCAGGGCTTTACCCTTCC__AAAGCCAG
4._PA_70_[PER]___
CCAGGGCTTTACCCTTCCCCAAAGCCAG
5._PA_70_[PER]___
CCAGGGCTTTACCCTTCCCCAAAGCCAG
6._PA_70_[PER]___
CCAGGGCTTTACCCTTCCCCAAAGCCAG
7._PA_70_[PER]___
____CC__________________CC__
8._PA_70_[PER]___
____GG________TT__CC__AG__AG
9._PA_70_[PER]___
GGAGCCAGAAACGGAA____AAAGGGAG
10._PA_70_[PER]___
GGAGCCAGAAACGGAA____AAAGGGAG
11._PA_70_[PER]___
GGAGCCAGAAACGGAA____AAAGGGAG
12._PA_70_[PER]___
GGAGCCAGAAACGGAA____AAAGGGAG
13._PA_70_[PER]___
AGAGCGAGAACCAGAA____AAGGGGAG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
TTAAGGTTCCCGGTGGTTACCCTTTTCC
1._PA_70_[PER]___
TTAAGGTTCCCGGTGGTTACCCTTTTCC
2._PA_70_[PER]___
________CCGGGG__TTACCGGGTTAA
3._PA_70_[PER]___
CCAACGCTCCGGGGAATTACCGGGTTAA
4._PA_70_[PER]___
CCAACGCTCCGGGGAGTTACCGGGTTAA
5._PA_70_[PER]___
CCAACGCTCCGGGGAGTTACCGGGTTAA
6._PA_70_[PER]___
CCAACGCTCCGGGGAATTACCGGGTTAA
7._PA_70_[PER]___
CC______CCCC______ACCG______
8._PA_70_[PER]___
__________GGGGAA__ACCG____AA
9._PA_70_[PER]___
GGAACGAGGGCCCC__AAACCGCC__AA
10._PA_70_[PER]___
GGAACGAGGGCCCC__AAACCGCC__AA
11._PA_70_[PER]___
GGAACGAGGGCCCC__AAACCGCC__AA
12._PA_70_[PER]___
GGAACGAGGGCCCC__AAACCGCC__AA
13._PA_70_[PER]___
GGAACCGGGGCCCC__AACCGG____AA
 29 30 31 32 33 34 35 36 37 38 39 40   
_Input profile
AGGGATCTAGCGAACCGTAAATGGX_XX_X
1._PA_70_[PER]___
AGGGATCTAGCGAACCGTAAATGGX_XX_X
2._PA_70_[PER]___
AA__AACCAGCCAACCGGAA____X_XX_X
3._PA_70_[PER]___
AAGGAACCAG__AACCGGAAATGGX_XX_X
4._PA_70_[PER]___
AAGGAACCAGCCAACCGGAAATGGX_XX_X
5._PA_70_[PER]___
AAGGAACCAGCCAACCGGAAATGGX_XX_X
6._PA_70_[PER]___
AAGGAACCAGCCAACCGGAAATGGX_XX_X
7._PA_70_[PER]___
____AA__AGGGAACC__AA____X_XX_X
8._PA_70_[PER]___
________AG________AA____X_XX_X
9._PA_70_[PER]___
__GGAAGGAGGGAAGGCCAAATGGX_XX_X
10._PA_70_[PER]___
__GGAAGGAGGGAAGGCCAAATGGX_XX_X
11._PA_70_[PER]___
__GGAAGGAGGGAAGGCCAAATGGX_XX_X
12._PA_70_[PER]___
__GGAAGGAGGGAAGGCCAAATGGX_XX_X
13._PA_70_[PER]___
__GGAAGGAGGGACAGCCAAATGGX_XX_X

Input profile: PA_70_[PER]

 
Mars Center for Cocoa Science, Brazil
Location: 4317 2 > FP
 Dapeng Zhang, 2016

1._PA_70_[PER] GC-04-053-3-17

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP1 (roxo)
 Mars, 2018

2._PA_70_[PER] RUQ_33

68.8 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

3._PA_70_[PER]

67.1 %
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D634
 Dapeng Zhang, 2016

4._PA_70_[PER]

66.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4317 6 > FP
 Dapeng Zhang, 2016

5._PA_70_[PER] GC-04-053-3-17

66.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP2 (verde)
 Mars, 2018

6._PA_70_[PER] RUQ_33

65 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

7._PA_70_[PER] PA70[PER]

61.5 %
13 shared markers

Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

8._PA_70_[PER] RUQ_33

61.5 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

9._PA_70_[PER] GC-04-53-3-17

40 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 4, Block: 3, Rep: 17, Tree: 6 > FP2 (verde)
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

10._PA_70_[PER] RUQ_33

40 %
35 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

11._PA_70_[PER] MITC-000025

40 %
35 shared markers

USDA-SHRS, United States of America
 Mars, 2018

12._PA_70_[PER] MITC-000026

40 %
35 shared markers

USDA-SHRS, United States of America
 Mars, 2018

13._PA_70_[PER] PA_70_[PER]_Fld#_185_Plt#_1

33.8 %
34 shared markers

USDA-TARS, United States of America
Location: Field: 185, Tree: 1
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25