SNP Profiles of EET 399 [ECU]   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCAGCCTTCTAATTGTCTCCAAGGCCAA
1._POUND_10_/B___
CCAGCCTTCTAATTGTCTCCAAGGCCAA
2._POUND_10_/B___
CCAGCCTTCTAATTGTCTCCAAGGCCAA
3._POUND_10_/B___
CCAGCCTTCTAATTGTCTCCAAGGCCAA
4._POUND_10_/B___
CCAGCCTTCTAATTGTCTCCAAGGCCAA
5._POUND_10_/B___
CCAGCCTTCTAATTGTCTCCAAGGCCAA
6._POUND_10_/B___
CCAGCCTTCTAATTGTCTCCAAGGCCAA
7._POUND_10_/B___
CCAGCCTTCTAATTGTCTCCAAGGCCAA
8._POUND_10_/B___
CCAGCCTTCTAATTGTCTCCAAGGCCAA
9._POUND_10_/B___
CCAGCCTTCTAATTGTCTCCAAGGCCAA
10._POUND_10_/B___
CCAGCCTTCTAATTGTCTCCAAGGCCAA
11._POUND_10_/B___
CCAGCCTTCTAATTGTCTCCAAGGCCAA
12._POUND_10_/B___
CCAGCCTTCTAATTGTCTCCAAGGCCAA
13._POUND_10_/B___
CCAGCCTTCTAATTGTCTCCAAGGCCAA
14._POUND_10_/B___
CCAGCCTTCTAATTGTCTCCAAGGCCAA
15._POUND_10_/B___
CCAGCCTTCTAATTGTCTCCAAGGCCAA
16._POUND_10_/B___
CCAGCCTTCTAATTGTCTCCAAGGCCAA
17._POUND_10_/B___
CCAGCCTTCTAATTGTCTCCAAGGCCAA
18._POUND_10_/B___
CCAAGGTT____TTTTCCCCAAGGCCGG
19._POUND_10_/B___
CCAAGGTT____TTTTCCCCAAGGCCGG
20._POUND_10_/B___
CCAAGGTTTT__TTTTCCCCAAGGCCGG
21._POUND_10_/B___
CCAAGGTTTT__TTTTCCCCAAGGCCGG
22._POUND_10_/B___
CCAAGGTTTT__TTTTCCCCAAGGCCGG
23._POUND_10_/B___
CCAAGGTTTT__TTTTCCCCAAGGCCGG
24._POUND_10_/B___
CCAAGGTTTT__TTTTCCCCAAGGCCGG
25._POUND_10_/B___
CCAAGGTTTT__TTTTCCCCAAGGCCGG
26._POUND_10_/B___
CCAAGGTTTT__TTTTCCCCAAGGCCGG
27._POUND_10_/B___
CCAAGGTTTT__TTTTCCCCAAGGCCGG
28._POUND_10_/B___
CCAAGGTTTT__TTTTCCCCAAGGCCGG
29._POUND_10_/B___
CCAAGGTTTT__TTTTCCCCAAGGCCGG
30._POUND_10_/B___
CCAAGGTTTT__TTTTCCCCAAGGCCGG
31._POUND_10_/B___
CCAAGGTTTT__TTTTCCCCAAGGCCGG
32._POUND_10_/B___
CTAGGGCTCTAACCTTCCCTAAAACCAG
33._POUND_10_/B___
CTAGGGCTCTAACCTTCCCTAAAACCAG
34._POUND_10_/B___
CCAGGGTTTTCCTTTTCCCCAAGGCCGG
35._POUND_10_/B___
CCAAGGTTTTCCTTTTCCCCAAGGCCGG
36._POUND_10_/B___
__AAGGTT______TT________CCGG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
TTAACGCTCTCGGGAACTACGGGGCTAC
1._POUND_10_/B___
TTAACGCTCTCGGGAACTACGGGGCTAC
2._POUND_10_/B___
TTAACGCTCTCGGGAACTACGGGGCTAC
3._POUND_10_/B___
TTAACGCTCTCGGGAACTACGGGGCTAC
4._POUND_10_/B___
TTAACGCTCTCGGGAACTACGGGGCTAC
5._POUND_10_/B___
TTAACGCTCTCGGGAACTACGGGGCTAC
6._POUND_10_/B___
TTAACGCTCTCGGGAACTACGGGGCTAC
7._POUND_10_/B___
TTAACGCTCTCGGGAACTACGGGGCTAC
8._POUND_10_/B___
TTAACGCTCTCGGGAACTACGGGGCTAC
9._POUND_10_/B___
TTAACGCTCTCGGGAACTACGGGGCTAC
10._POUND_10_/B___
TTAACGCTCTCGGGAACTACGGGGCTAC
11._POUND_10_/B___
TTAACGCTCTCGGGAACTACGGGGCTAC
12._POUND_10_/B___
TTAACGCTCTCGGGAACTACGGGGCTAC
13._POUND_10_/B___
TTAACGCTCTCGGGAACTACGGGGCTAC
14._POUND_10_/B___
TTAACGCTCTCGGGAACTACGGGGCTAC
15._POUND_10_/B___
TTAACGCTCTCGGGAACTACGGGGCTAC
16._POUND_10_/B___
TTAACGCTCTCGGGAACTACGGGGCTAC
17._POUND_10_/B___
TTAACGCTCTCGGGAACTACGGGGCTAC
18._POUND_10_/B___
TTAAGGTTTTCGGGAACCAAGGTTCCCC
19._POUND_10_/B___
TTAAGGTTTTCGGGAACCAAGGTTCCCC
20._POUND_10_/B___
TTAAGGTTTTCGGGAACCAAGGTTCCCC
21._POUND_10_/B___
TTAAGGTTTTCGGGAACCAAGGTTCCCC
22._POUND_10_/B___
TTAAGGTTTTCGGGAACCAAGGTTCCCC
23._POUND_10_/B___
TTAAGGTTTTCGGGAACCAAGGTTCCCC
24._POUND_10_/B___
TTAAGGTTTTCGGGAACCAAGGTTCCCC
25._POUND_10_/B___
TTAAGGTTTTCGGGAACCAAGGTTCCCC
26._POUND_10_/B___
TTAAGGTTTTCGGGAACCAAGGTTCCCC
27._POUND_10_/B___
TTAAGGTTTTCGGGAACCAAGGTTCCCC
28._POUND_10_/B___
TTAAGGTTTTCGGGAACCAAGGTTCCCC
29._POUND_10_/B___
TTAAGGTTTTCGGGAACCAAGGTTCCCC
30._POUND_10_/B___
TTAAGGTTTTCGGGAACCAAGGTTCCCC
31._POUND_10_/B___
TTAAGGTTTTCGGGAACCAAGGTTCCCC
32._POUND_10_/B___
CTATCGCTCCCGGGAGTTAACGGTCTCC
33._POUND_10_/B___
CTATCGCTCCCGGGAGTTAACGGTCTCC
34._POUND_10_/B___
TTAAGGTTTTCGGGAACCAAGGTTCCCC
35._POUND_10_/B___
TTAAGGTTTTCGGGAACCAAGGTTCCCC
36._POUND_10_/B___
________TTCGGG__CCAAGGTTCCCC
 29 30 31 32 33 34 35 36 37 38 39 40   
_Input profile
AGGGAACTAGCCCCCTGTACATGGX_XX_X
1._POUND_10_/B___
AGGGAACTAGCCCCCTGTACATGGX_XX_X
2._POUND_10_/B___
AGGGAACTAGCCCCCTGTACATGGX_XX_X
3._POUND_10_/B___
AGGGAACTAGCCCCCTGTACATGGX_XX_X
4._POUND_10_/B___
AGGGAACTAGCCCCCTGTACATGGX_XX_X
5._POUND_10_/B___
AGGGAACTAGCCCCCTGTACATGGX_XX_X
6._POUND_10_/B___
AGGGAACTAGCCCCCTGTACATGGX_XX_X
7._POUND_10_/B___
AGGGAACTAGCCCCCTGTACATGGX_XX_X
8._POUND_10_/B___
AGGGAACTAGCCCCCTGTACATGGX_XX_X
9._POUND_10_/B___
AGGGAACTAGCCCCCTGTACATGGX_XX_X
10._POUND_10_/B___
AGGGAACTAGCCCCCTGTACATGGX_XX_X
11._POUND_10_/B___
AGGGAACTAGCCCCCTGTACATGGX_XX_X
12._POUND_10_/B___
AGGGAACTAGCCCCCTGTACATGGX_XX_X
13._POUND_10_/B___
AGGGAACTAGCCCCCTGTACATGGX_XX_X
14._POUND_10_/B___
AGGGAACTAGCCCCCTGTACATGGX_XX_X
15._POUND_10_/B___
AGGGAACTAGCCCCCTGTACATGGX_XX_X
16._POUND_10_/B___
AGGG__CTAGCCCCCTGTACATGGX_XX_X
17._POUND_10_/B___
AGGG__CTAGCCCCCTGTACATGGX_XX_X
18._POUND_10_/B___
AAGGAACCGGCCAACCGGAATTGGX_XX_X
19._POUND_10_/B___
AAGGAACCGGCCAACCGGAATTGGX_XX_X
20._POUND_10_/B___
AAGGAACCGGCCAACCGGAATTGGX_XX_X
21._POUND_10_/B___
AAGGAACCGGCCAACCGGAATTGGX_XX_X
22._POUND_10_/B___
AAGGAACCGGCCAACCGGAATTGGX_XX_X
23._POUND_10_/B___
AAGGAACCGGCCAACCGGAATTGGX_XX_X
24._POUND_10_/B___
AAGGAACCGGCCAACCGGAATTGGX_XX_X
25._POUND_10_/B___
AAGGAACCGGCCAACCGGAATTGGX_XX_X
26._POUND_10_/B___
AAGGAACCGGCCAACCGGAATTGGX_XX_X
27._POUND_10_/B___
AAGGAACCGGCCAACCGGAATTGGX_XX_X
28._POUND_10_/B___
AAGGAACCGGCCAACCGGAATTGGX_XX_X
29._POUND_10_/B___
AAGGAACCGGCCAACCGGAATTGGX_XX_X
30._POUND_10_/B___
AAGGAACCGGCCAACCGGAATTGGX_XX_X
31._POUND_10_/B___
AAGGAACCGGCCAACCGGAATTGGX_XX_X
32._POUND_10_/B___
AAGGAACCAACCACCTGTCCATCGX_XX_X
33._POUND_10_/B___
AAGGAACCAACCACCTGTCCATCGX_XX_X
34._POUND_10_/B___
AAGGAACCGGCCAACCGGAATTGGX_XX_X
35._POUND_10_/B___
AAGGAACCGGCCAACCGGAATTGGX_XX_X
36._POUND_10_/B___
AA__AACCGGCCAACCGGAA____X_XX_X

Input profile: POUND_10_/B

 
Mars Center for Cocoa Science, Brazil
Location: 8405 6
 Dapeng Zhang, 2016

1._POUND_10_/B GC-08-162-4-05

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

2._POUND_10_/B

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8405 10
 Dapeng Zhang, 2016

3._POUND_10_/B GC-01-115-6-12

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP1
 Mars, 2018

4._POUND_10_/B GC-01-115-6-12

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

5._POUND_10_/B GC-08-162-4-05

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

6._POUND_10_/B

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8405 8
 Dapeng Zhang, 2016

7._POUND_10_/B GC-08-162-4-05

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

8._POUND_10_/B GC-08-162-4-05

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

9._POUND_10_/B GC-08-162-4-05

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

10._POUND_10_/B GC-08-162-4-05

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

11._POUND_10_/B

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8405 5
 Dapeng Zhang, 2016

12._POUND_10_/B

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1612 10
 Dapeng Zhang, 2016

13._POUND_10_/B

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1612 2 > FP
 Dapeng Zhang, 2016

14._POUND_10_/B

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8405 2
 Dapeng Zhang, 2016

15._POUND_10_/B

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8405 4
 Dapeng Zhang, 2016

16._POUND_10_/B

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8405 11
 Dapeng Zhang, 2016

17._POUND_10_/B GC-08-162-4-05

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

18._POUND_10_/B GC-01-115-6-12

67.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

19._POUND_10_/B

67.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1612 9
 Dapeng Zhang, 2016

20._POUND_10_/B GC-01-115-6-12

66.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP2
 Mars, 2018

21._POUND_10_/B GC-01-115-6-12

66.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

22._POUND_10_/B GC-01-115-6-12

66.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11 > FP3
 Mars, 2018

23._POUND_10_/B GC-08-162-4-05

66.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

24._POUND_10_/B GC-08-163-4-06

66.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

25._POUND_10_/B GC-08-163-4-06

66.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

26._POUND_10_/B

66.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1612 1 > FP
 Dapeng Zhang, 2016

27._POUND_10_/B

66.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1612 11 > F
 Dapeng Zhang, 2016

28._POUND_10_/B

66.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1612 3 > FP
 Dapeng Zhang, 2016

29._POUND_10_/B

66.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8405 7
 Dapeng Zhang, 2016

30._POUND_10_/B

66.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8406 2
 Dapeng Zhang, 2016

31._POUND_10_/B

66.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8406 10
 Dapeng Zhang, 2016

32._POUND_10_/B

66.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8406 7
 Dapeng Zhang, 2016

33._POUND_10_/B GC-08-163-4-06

66.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

34._POUND_10_/B RUQ_1618

66.3 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

35._POUND_10_/B

65 %
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F429 T13
 Dapeng Zhang, 2016

36._POUND_10_/B RUQ_1618

56.3 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25