SNP Profiles of EET 233A   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCAACGTTCTCCTTGTCCCCAAGGCCAA
1._POUND_18___
CCAACGTTCTCCTTGTCCCCAAGGCCAA
2._POUND_18___
CCAACGTTCTCCTTGTCCCCAAGGCCAA
3._POUND_18___
CCAACGTTCTCCTTGTCCCCAAGGCCAA
4._POUND_18___
CCAACGTTCTCCTTGTCCCCAAGGCCAA
5._POUND_18___
CCAACGTTCTCCTTGTCCCCAAGGCCAA
6._POUND_18___
CCAACGTTCTCCTTGTCCCCAAGGCCAA
7._POUND_18___
CCAACGTTCTCCTTGTCCCCAAGGCCAA
8._POUND_18___
CCAACGTTCTCCTTGTCCCCAAGGCCAA
9._POUND_18___
CCAACGTTCTCCTTGTCCCCAAGGCCAA
10._POUND_18___
CCAACGTTCTCCTTGTCCCCAAGGCCAA
11._POUND_18___
CCAACGTTCTCCTTGTCCCCAAGGCCAA
12._POUND_18___
CCAACGTTCTCCTTGTCCCCAAGGCCAA
13._POUND_18___
CCAACGTTCTCCTTGTCCCCAAGGCCAA
14._POUND_18___
CCAACGTTCTCCTTGTCCCCAAGGCCAA
15._POUND_18___
CCAACGTTCTCCTTGTCCCCAAGGCCAA
16._POUND_18___
CCAACGTTCTCCTTGTCCCCAAGGCCAA
17._POUND_18___
CCAACGTTCTCCTTGTCCCCAAGGCCAA
18._POUND_18___
CCAACGTTCTCCTTGTCCCCAAGGCCAA
19._POUND_18___
____CG________GT__CC__GG__AA
20._POUND_18___
____CG________GT__CC__GG__AA
21._POUND_18___
__AACGTT______GT________CCAA
22._POUND_18___
CCAGCGTTCTCCTTGTCCCCAAGGCCAA
23._POUND_18___
GGAACGAAAGCCAAAC____AAGGGGAA
24._POUND_18___
GGAACGAAAGCCAAAC____AAGGGGAA
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
TTAAGGCCCTCCGGAACCACGGGTCTAC
1._POUND_18___
TTAAGGCCCTCCGGAACCACGGGTCTAC
2._POUND_18___
TTAAGGCCCTCCGGAACCACGGGTCTAC
3._POUND_18___
TTAAGGCCCTCCGGAACCACGGGTCTAC
4._POUND_18___
TTAAGGCCCTCCGGAACCACGGGTCTAC
5._POUND_18___
TTAAGGCCCTCCGGAACCACGGGTCTAC
6._POUND_18___
TTAAGGCCCTCCGGAACCACGGGTCTAC
7._POUND_18___
TTAAGGCCCTCCGGAACCACGGGTCTAC
8._POUND_18___
TTAAGGCCCTCCGGAACCACGGGTCTAC
9._POUND_18___
TTAAGGCCCTCCGGAACCACGGGTCTAC
10._POUND_18___
TTAAGGCCCTCCGGAACCACGGGTCTAC
11._POUND_18___
TTAAGGCCCTCCGGAACCACGGGTCTAC
12._POUND_18___
TTAAGGCCCTCCGGAACCACGGGTCTAC
13._POUND_18___
TTAAGGCCCTCCGGAACCACGGGTCTAC
14._POUND_18___
TTAAGGCCCTCCGGAACCACGGGTCTAC
15._POUND_18___
TTAAGGCCCTCCGGAACCACGGGTCTAC
16._POUND_18___
TTAAGGCCCTCCGGAACCACGGGTCTAC
17._POUND_18___
TTAAGGCCCTCCGGAACCACGGGTCTAC
18._POUND_18___
TTAAGGCCCTCCGGAACCACGGGTCTAC
19._POUND_18___
__________CCGGAA__ACGG____AC
20._POUND_18___
__________CCGGAA__ACGG____AC
21._POUND_18___
________TTCCGG__CCACGGGTCTAC
22._POUND_18___
TTAAGGCCCTCCGGAACCACGGGTCTAC
23._POUND_18___
AAAAGGGGAGGGCC__GGACGGAC__AC
24._POUND_18___
AAAAGGGGAGGGCC__GGACGGAC__AC
 29 30 31 32 33 34 35 36 37 38 39 40   
_Input profile
AAGGAACTAACGCCCTGTACTTGGX_XX_X
1._POUND_18___
AAGGAACTAACGCCCTGTACTTGGX_XX_X
2._POUND_18___
AAGGAACTAACGCCCTGTACTTGGX_XX_X
3._POUND_18___
AAGGAACTAACGCCCTGTACTTGGX_XX_X
4._POUND_18___
AAGGAACTAACGCCCTGTACTTGGX_XX_X
5._POUND_18___
AAGGAACTAACGCCCTGTACTTGGX_XX_X
6._POUND_18___
AAGGAACTAACGCCCTGTACTTGGX_XX_X
7._POUND_18___
AAGGAACTAACGCCCTGTACTTGGX_XX_X
8._POUND_18___
AAGGAACTAACGCCCTGTACTTGGX_XX_X
9._POUND_18___
AAGGAACTAACGCCCTGTACTTGGX_XX_X
10._POUND_18___
AAGGAACTAACGCCCTGTACTTGGX_XX_X
11._POUND_18___
AAGGAACTAACGCCCTGTACTTGGX_XX_X
12._POUND_18___
AAGGAACTAACGCCCTGTACTTGGX_XX_X
13._POUND_18___
AAGGAACTAACGCCCTGTACTTGGX_XX_X
14._POUND_18___
AAGGAACTAACGCCCTGTACTTGGX_XX_X
15._POUND_18___
AAGGAACTAACGCCCTGTACTTGGX_XX_X
16._POUND_18___
AAGGAACTAACGCCCTGTACTTGGX_XX_X
17._POUND_18___
AAGGAACTAACGCCCTGTACTTGGX_XX_X
18._POUND_18___
AAGGAACTAA__CCCTGTACTTGGX_XX_X
19._POUND_18___
________AA________AC____X_XX_X
20._POUND_18___
________AA________AC____X_XX_X
21._POUND_18___
AA__AACTAACGCCCTGTAC____X_XX_X
22._POUND_18___
AAAGAACTAACGCCCTGTACTTGGX_XX_X
23._POUND_18___
__GGAAAGAACGCCAGACACTTGGX_XX_X
24._POUND_18___
__GGAAAGAACGCCAGACACTTGGX_XX_X

Input profile: POUND_18

 
Mars Center for Cocoa Science, Brazil
Location: 8186 9
 Dapeng Zhang, 2016

1._POUND_18

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8186 4
 Dapeng Zhang, 2016

2._POUND_18 GC-08-064-1-86

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

3._POUND_18 GC-08-064-1-86

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

4._POUND_18 GC-08-064-1-86

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

5._POUND_18 GC-08-064-1-86

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

6._POUND_18

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8186 2 > FP
 Dapeng Zhang, 2016

7._POUND_18

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8186 12
 Dapeng Zhang, 2016

8._POUND_18

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8186 11
 Dapeng Zhang, 2016

9._POUND_18

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8186 7
 Dapeng Zhang, 2016

10._POUND_18

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8186 6
 Dapeng Zhang, 2016

11._POUND_18

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8186 3
 Dapeng Zhang, 2016

12._POUND_18

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8186 1
 Dapeng Zhang, 2016

13._POUND_18 GC-08-064-1-86

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

14._POUND_18 GC-08-064-1-86

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

15._POUND_18 GC-08-064-1-86

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

16._POUND_18 GC-08-064-1-86

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

17._POUND_18 GC-08-064-1-86

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

18._POUND_18

identical
39 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F447 T2
 Dapeng Zhang, 2016

19._POUND_18 RUQ_874B

identical
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

20._POUND_18 RUQ_874

identical
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

21._POUND_18 RUQ_874

97.9 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

22._POUND_18 RUQ_874

97.5 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

23._POUND_18 GC-08-64-1-86

54.3 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 8, Block: 1, Rep: 86, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

24._POUND_18 RUQ_874

54.3 %
35 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25