SNP Profiles of SCA 19   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CGAAACGGTTCCCCAACTAAAGGGAACC
1._GC-03-004-1-04
CGAAACGGTTCCCCAACTAAAGGGAACC
2._SCA_19
CGAAACGGTTCCCCAACTAAAGGGAACC
3._GC-03-004-1-04
CGAAACGGTTCCCCAACTAAAGGGAACC
4._GC-03-004-1-04
CGAAACGGTTCCCCAACTAAAGGGAACC
5._GC-03-004-1-04
CGAAACGGTTCCCCAACTAAAGGGAACC
6._GC-03-004-1-04
CGAAACGGTTCCCCAACTAAAGGGAACC
7._GC-03-004-1-04
CGAAACGGTTCCCCAACTAAAGGGAACC
8._SCA_19
CGAAACGGTTCCCCAACTAAAGGGAACC
9._GC-03-004-1-04
CGAAACGGTTCCCCAACTAAAGGGAACC
10._GC-03-004-1-04
CGAAACGGTTCCCCAACTAAAGGGAACC
11._GC-03-004-1-04
CGAAACGGTTCCCCAACTAAAGGGAACC
12._GC-03-004-1-04
CGAAACGGTTCCCCAACTAAAGGGAACC
13._GC-03-004-1-04
CGAAACGGTTCCCCAACTAAAGGGAACC
14._GC-03-004-1-04
CGAAACGGTTCCCCAACTAAAGGGAACC
15._SCA_19
CGAAACGGTTCCCCAACTAAAGGGAACC
16._SCA_19
CGAAACGGTTCCCCAACTAAAGGGAACC
17._SCA_19
CGAAACGGTTCCCCAACTAAAGGGAACC
18._SCA_19
CGAAACGGTTCCCCAACTAAAGGGAACC
19._SCA_19
CGAAACGGTTCCCCAACTAAAGGGAACC
20._SCA_19
CGAAACGGTTCCCCAACTAAAGGGAACC
21._SCA_19
CGAAACGGTTCCCCAACTAAAGGGAACC
22._SCA_19
CGAAACGGTTCCCCAACTAAAGGGAACC
23._SCA_19
CGAAACGGTTCCCCAACTAAAGGGAACC
24._RUQ_46
CGAAACGGTTCCCCAACTAAAGGGAACC
25._SCA_19
CGAAACGGTTCCCCAACTAAAGGGAACC
26._RUQ_46
____CCGGTTCCCCAACTAA__GGAACC
27._GC-03-4-1-4
CGAAACCCAACCGGAAAGAAAG__AA__
28._SCA_19
GGTTCCGTCCAACGAGCTAAGGAACCCT
29._SCA_19
GGTTCCGTCCAACGAGCTAAGGAACCCT
30._SCA_19
GGTTCCGTCCAACGAGCTAAGGAACCCT
31._GC-03-004-1-04
GGTTCCGTCCAACGAGCTAAGGAACCCT
32._GC-03-004-1-04
GGTTCCGTCCAACGAGCTAAGGAACCCT
33._GC-03-004-1-04
GGTTCCGTCCAACGAGCTAAGGAACCCT
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
CCCCTTAAGGCCTTCTCCTTCCAACCGG
1._GC-03-004-1-04
CCCCTTAAGGCCTTCTCCTTCCAACCGG
2._SCA_19
CCCCTTAAGGCCTTCTCCTTCCAACCGG
3._GC-03-004-1-04
CCCCTTAAGGCCTTCTCCTTCCAACCGG
4._GC-03-004-1-04
CCCCTTAAGGCCTTCTCCTTCCAACCGG
5._GC-03-004-1-04
CCCCTTAAGGCCTTCTCCTTCCAACCGG
6._GC-03-004-1-04
CCCCTTAAGGCCTTCTCCTTCCAACCGG
7._GC-03-004-1-04
CCCCTTAAGGCCTTCTCCTTCCAACCGG
8._SCA_19
CCCCTTAAGGCCTTCTCCTTCCAACCGG
9._GC-03-004-1-04
CCCCTTAAGGCCTTCTCCTTCCAACCGG
10._GC-03-004-1-04
CCCCTTAAGGCCTTCTCCTTCCAACCGG
11._GC-03-004-1-04
CCCCTTAAGGCCTTCTCCTTCCAACCGG
12._GC-03-004-1-04
CCCCTTAAGGCCTTCTCCTTCCAACCGG
13._GC-03-004-1-04
CCCCTTAAGGCCTTCTCCTTCCAACCGG
14._GC-03-004-1-04
CCCCTTAAGGCCTTCTCCTTCCAACCGG
15._SCA_19
CCCCTTAAGGCCTTCTCCTTCCAACCGG
16._SCA_19
CCCCTTAAGGCCTTCTCCTTCCAACCGG
17._SCA_19
CCCCTTAAGGCCTTCTCCTTCCAACCGG
18._SCA_19
CCCCTTAAGGCCTTCTCCTTCCAACCGG
19._SCA_19
CCCCTTAAGGCCTTCTCCTTCCAACCGG
20._SCA_19
CCCCTTAAGGCCTTCTCCTTCCAACCGG
21._SCA_19
CCCCTTAAGGCCTTCTCCTTCCAACCGG
22._SCA_19
CCCCTTAAGGCCTTCTCCTTCCAACCGG
23._SCA_19
CCCCTTAAGGCCTTCTCCTTCCAACCGG
24._RUQ_46
CCCCTTAGGGCCTTCTCCTTCCAACCGG
25._SCA_19
CCCCTTAGGGCCTTCTCCTTCCAACCGG
26._RUQ_46
CCCCTT__GGCCTT________AACC__
27._GC-03-4-1-4
CCCCAA__CCGGAAAGCCTTGGAAGGGG
28._SCA_19
GGAACCAAGTGGCTCCGGAACTAGCCGG
29._SCA_19
GGAACCAAGTGGCTCCGGAACTAGCCGG
30._SCA_19
GGAACCAAGTGGCTCCGGAACTAGCCGG
31._GC-03-004-1-04
GGAACCAAGTGGCTCCGGAACTAGCCGG
32._GC-03-004-1-04
GGAACCAAGTGGCTCCGGAACTAGCCGG
33._GC-03-004-1-04
GGAACCAAGTGGCTCCGGAACTAGCCGG
 29 30 31 32 33 34 35 36 37 38 39    
_Input profile
TTCCTTGGTTCCCCTTCCAGCCX_XX_XX_X
1._GC-03-004-1-04
TTCCTTGGTTCCCCTTCCAGCCX_XX_XX_X
2._SCA_19
TTCCTTGGTTCCCCTTCCAGCCX_XX_XX_X
3._GC-03-004-1-04
TTCCTTGGTTCCCCTTCCAGCCX_XX_XX_X
4._GC-03-004-1-04
TTCCTTGGTTCCCCTTCCAGCCX_XX_XX_X
5._GC-03-004-1-04
TTCCTTGGTTCCCCTTCCAGCCX_XX_XX_X
6._GC-03-004-1-04
TTCCTTGGTTCCCCTTCCAGCCX_XX_XX_X
7._GC-03-004-1-04
TTCCTTGGTTCCCCTTCCAGCCX_XX_XX_X
8._SCA_19
TTCCTTGGTTCCCCTTCCAGCCX_XX_XX_X
9._GC-03-004-1-04
TTCCTTGGTTCCCCTTCCAGCCX_XX_XX_X
10._GC-03-004-1-04
TTCCTTGGTTCCCCTTCCAGCCX_XX_XX_X
11._GC-03-004-1-04
TTCCTTGGTTCCCCTTCCAGCCX_XX_XX_X
12._GC-03-004-1-04
TTCCTTGGTTCCCCTTCCAGCCX_XX_XX_X
13._GC-03-004-1-04
TTCCTTGGTTCCCCTTCCAGCCX_XX_XX_X
14._GC-03-004-1-04
TTCCTTGGTTCCCCTTCCAGCCX_XX_XX_X
15._SCA_19
TTCCTTGGTTCCCCTTCCAGCCX_XX_XX_X
16._SCA_19
TTCCTTGGTTCCCCTTCCAGCCX_XX_XX_X
17._SCA_19
TTCCTTGGTTCCCCTTCCAGCCX_XX_XX_X
18._SCA_19
TTCCTTGGTTCCCCTTCCAGCCX_XX_XX_X
19._SCA_19
TTCCTTGGTTCCCCTTCCAGCCX_XX_XX_X
20._SCA_19
TTCCTTGGTTCCCCTTCCAGCCX_XX_XX_X
21._SCA_19
TTCCTTGGTTCCCCTTCCAGCCX_XX_XX_X
22._SCA_19
TTCCTTGGTTCCCCTTCCAGCCX_XX_XX_X
23._SCA_19
TTCCTTGGTTCCCCTTCCAGCCX_XX_XX_X
24._RUQ_46
TTCCTTGGTTCCCCTTCCAGCCX_XX_XX_X
25._SCA_19
TTCCTTGGTTCCCCTTCCAGCCX_XX_XX_X
26._RUQ_46
______GG______TTCCAG__X_XX_XX_X
27._GC-03-4-1-4
TT____CCAACCGGAAGGAGGGX_XX_XX_X
28._SCA_19
AACCCCGTTTCCTTTTCGAACCX_XX_XX_X
29._SCA_19
AACCCCGTTTCCTTTTCGAACCX_XX_XX_X
30._SCA_19
AACCCCGTTTCCTTTTCGAACCX_XX_XX_X
31._GC-03-004-1-04
AACCCCGTTTCCTTTTCGAACCX_XX_XX_X
32._GC-03-004-1-04
AACCCCGTTTCCTTTTCGAACCX_XX_XX_X
33._GC-03-004-1-04
AACCCCGTTTCCTTTTCGAACCX_XX_XX_X

Input profile: SCA_19

 
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Mars Center for Cocoa Science, Brazil
Location: 3104 11
 Dapeng Zhang, 2016

1._SCA_19 GC-03-004-1-04

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

2._SCA_19

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3104 6 > FP
 Dapeng Zhang, 2016

3._SCA_19 GC-03-004-1-04

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

4._SCA_19 GC-03-004-1-04

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

5._SCA_19 GC-03-004-1-04

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP4
 Mars, 2018

6._SCA_19 GC-03-004-1-04

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

7._SCA_19 GC-03-004-1-04

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP3
 Mars, 2018

8._SCA_19

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3104 4 > FP
 Dapeng Zhang, 2016

9._SCA_19 GC-03-004-1-04

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

10._SCA_19 GC-03-004-1-04

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

11._SCA_19 GC-03-004-1-04

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12 > FP2
 Mars, 2018

12._SCA_19 GC-03-004-1-04

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

13._SCA_19 GC-03-004-1-04

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

14._SCA_19 GC-03-004-1-04

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

15._SCA_19

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3104 12 > F
 Dapeng Zhang, 2016

16._SCA_19

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3104 15
 Dapeng Zhang, 2016

17._SCA_19

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3104 14
 Dapeng Zhang, 2016

18._SCA_19

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3104 13
 Dapeng Zhang, 2016

19._SCA_19

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3104 10
 Dapeng Zhang, 2016

20._SCA_19

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3104 7
 Dapeng Zhang, 2016

21._SCA_19

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3104 5
 Dapeng Zhang, 2016

22._SCA_19

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3104 2
 Dapeng Zhang, 2016

23._SCA_19

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3104 1
 Dapeng Zhang, 2016

24._SCA_19 RUQ_46

98.7 %
39 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

25._SCA_19

98.7 %
39 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 748
 Dapeng Zhang, 2016

26._SCA_19 RUQ_46

97.8 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

27._SCA_19 GC-03-4-1-4

50 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 3, Block: 1, Rep: 4, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

28._SCA_19

44.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3104 9 > FP
 Dapeng Zhang, 2016

29._SCA_19

44.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3104 16
 Dapeng Zhang, 2016

30._SCA_19

44.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3104 8
 Dapeng Zhang, 2016

31._SCA_19 GC-03-004-1-04

44.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

32._SCA_19 GC-03-004-1-04

44.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

33._SCA_19 GC-03-004-1-04

44.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

 

  Key to SNP Markers

1TcSNP25 2TcSNP32 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP193 7TcSNP226 8TcSNP230 9TcSNP242 10TcSNP372
11TcSNP429 12TcSNP469 13TcSNP529 14TcSNP534 15TcSNP577
16TcSNP591 17TcSNP619 18TcSNP645 19TcSNP723 20TcSNP872
21TcSNP891 22TcSNP917 23TcSNP929 24TcSNP953 25TcSNP994
26TcSNP998 27TcSNP1060 28TcSNP1062 29TcSNP1075 30TcSNP1144
31TcSNP1165 32TcSNP1253 33TcSNP1270 34TcSNP1350 35TcSNP1414
36TcSNP1442 37TcSNP1458 38TcSNP1484 39TcSNP1520