SNP Profiles of SCA 19   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CGAAACGGTTCCCCAACTAAAGGGAACC
1._GC-03-004-1-04
CGAAACGGTTCCCCAACTAAAGGGAACC
2._SCA_19
CGAAACGGTTCCCCAACTAAAGGGAACC
3._GC-03-004-1-04
CGAAACGGTTCCCCAACTAAAGGGAACC
4._GC-03-004-1-04
CGAAACGGTTCCCCAACTAAAGGGAACC
5._GC-03-004-1-04
CGAAACGGTTCCCCAACTAAAGGGAACC
6._GC-03-004-1-04
CGAAACGGTTCCCCAACTAAAGGGAACC
7._GC-03-004-1-04
CGAAACGGTTCCCCAACTAAAGGGAACC
8._SCA_19
CGAAACGGTTCCCCAACTAAAGGGAACC
9._GC-03-004-1-04
CGAAACGGTTCCCCAACTAAAGGGAACC
10._GC-03-004-1-04
CGAAACGGTTCCCCAACTAAAGGGAACC
11._GC-03-004-1-04
CGAAACGGTTCCCCAACTAAAGGGAACC
12._GC-03-004-1-04
CGAAACGGTTCCCCAACTAAAGGGAACC
13._GC-03-004-1-04
CGAAACGGTTCCCCAACTAAAGGGAACC
14._SCA_19
CGAAACGGTTCCCCAACTAAAGGGAACC
15._SCA_19
CGAAACGGTTCCCCAACTAAAGGGAACC
16._SCA_19
CGAAACGGTTCCCCAACTAAAGGGAACC
17._SCA_19
CGAAACGGTTCCCCAACTAAAGGGAACC
18._SCA_19
CGAAACGGTTCCCCAACTAAAGGGAACC
19._SCA_19
CGAAACGGTTCCCCAACTAAAGGGAACC
20._SCA_19
CGAAACGGTTCCCCAACTAAAGGGAACC
21._SCA_19
CGAAACGGTTCCCCAACTAAAGGGAACC
22._GC-03-004-1-04
CGAAACGGTTCCCCAACTAAAGGGAACC
23._SCA_19
CGAAACGGTTCCCCAACTAAAGGGAACC
24._RUQ_46
CGAAACGGTTCCCCAACTAAAGGGAACC
25._SCA_19
CGAAACGGTTCCCCAACTAAAGGGAACC
26._RUQ_46
____CCGGTTCCCCAACTAA__GGAACC
27._GC-03-4-1-4
CGAAACCCAACCGGAAAGAAAG__AA__
28._SCA_19
GGTTCCGTCCAACGAGCTAAGGAACCCT
29._SCA_19
GGTTCCGTCCAACGAGCTAAGGAACCCT
30._SCA_19
GGTTCCGTCCAACGAGCTAAGGAACCCT
31._GC-03-004-1-04
GGTTCCGTCCAACGAGCTAAGGAACCCT
32._GC-03-004-1-04
GGTTCCGTCCAACGAGCTAAGGAACCCT
33._GC-03-004-1-04
GGTTCCGTCCAACGAGCTAAGGAACCCT
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
GGCCCCTTAAGGCCTTCTCCTTCCAACC
1._GC-03-004-1-04
GGCCCCTTAAGGCCTTCTCCTTCCAACC
2._SCA_19
GGCCCCTTAAGGCCTTCTCCTTCCAACC
3._GC-03-004-1-04
GGCCCCTTAAGGCCTTCTCCTTCCAACC
4._GC-03-004-1-04
GGCCCCTTAAGGCCTTCTCCTTCCAACC
5._GC-03-004-1-04
GGCCCCTTAAGGCCTTCTCCTTCCAACC
6._GC-03-004-1-04
GGCCCCTTAAGGCCTTCTCCTTCCAACC
7._GC-03-004-1-04
GGCCCCTTAAGGCCTTCTCCTTCCAACC
8._SCA_19
GGCCCCTTAAGGCCTTCTCCTTCCAACC
9._GC-03-004-1-04
GGCCCCTTAAGGCCTTCTCCTTCCAACC
10._GC-03-004-1-04
GGCCCCTTAAGGCCTTCTCCTTCCAACC
11._GC-03-004-1-04
GGCCCCTTAAGGCCTTCTCCTTCCAACC
12._GC-03-004-1-04
GGCCCCTTAAGGCCTTCTCCTTCCAACC
13._GC-03-004-1-04
GGCCCCTTAAGGCCTTCTCCTTCCAACC
14._SCA_19
GGCCCCTTAAGGCCTTCTCCTTCCAACC
15._SCA_19
GGCCCCTTAAGGCCTTCTCCTTCCAACC
16._SCA_19
GGCCCCTTAAGGCCTTCTCCTTCCAACC
17._SCA_19
GGCCCCTTAAGGCCTTCTCCTTCCAACC
18._SCA_19
GGCCCCTTAAGGCCTTCTCCTTCCAACC
19._SCA_19
GGCCCCTTAAGGCCTTCTCCTTCCAACC
20._SCA_19
GGCCCCTTAAGGCCTTCTCCTTCCAACC
21._SCA_19
GGCCCCTTAAGGCCTTCTCCTTCCAACC
22._GC-03-004-1-04
__CCCCTTAAGGCCTTCTCCTTCCAACC
23._SCA_19
__CCCCTTAAGGCCTTCTCCTTCCAACC
24._RUQ_46
GGCCCCTTAGGGCCTTCTCCTTCCAACC
25._SCA_19
GGCCCCTTAGGGCCTTCTCCTTCCAACC
26._RUQ_46
GGCCCCTT__GGCCTT________AACC
27._GC-03-4-1-4
CCCCCCAA__CCGGAAAGCCTTGGAAGG
28._SCA_19
GGGGAACCAAGTGGCTCCGGAACTAGCC
29._SCA_19
GGGGAACCAAGTGGCTCCGGAACTAGCC
30._SCA_19
GGGGAACCAAGTGGCTCCGGAACTAGCC
31._GC-03-004-1-04
GGGGAACCAAGTGGCTCCGGAACTAGCC
32._GC-03-004-1-04
GGGGAACCAAGTGGCTCCGGAACTAGCC
33._GC-03-004-1-04
GGGGAACCAAGTGGCTCCGGAACTAGCC
 29 30 31 32 33 34 35 36 37 38 39 40   
_Input profile
GGTTCCTTGGTTCCCCTTCCAGCCX_XX_X
1._GC-03-004-1-04
GGTTCCTTGGTTCCCCTTCCAGCCX_XX_X
2._SCA_19
GGTTCCTTGGTTCCCCTTCCAGCCX_XX_X
3._GC-03-004-1-04
GGTTCCTTGGTTCCCCTTCCAGCCX_XX_X
4._GC-03-004-1-04
GGTTCCTTGGTTCCCCTTCCAGCCX_XX_X
5._GC-03-004-1-04
GGTTCCTTGGTTCCCCTTCCAGCCX_XX_X
6._GC-03-004-1-04
GGTTCCTTGGTTCCCCTTCCAGCCX_XX_X
7._GC-03-004-1-04
GGTTCCTTGGTTCCCCTTCCAGCCX_XX_X
8._SCA_19
GGTTCCTTGGTTCCCCTTCCAGCCX_XX_X
9._GC-03-004-1-04
GGTTCCTTGGTTCCCCTTCCAGCCX_XX_X
10._GC-03-004-1-04
GGTTCCTTGGTTCCCCTTCCAGCCX_XX_X
11._GC-03-004-1-04
GGTTCCTTGGTTCCCCTTCCAGCCX_XX_X
12._GC-03-004-1-04
GGTTCCTTGGTTCCCCTTCCAGCCX_XX_X
13._GC-03-004-1-04
GGTTCCTTGGTTCCCCTTCCAGCCX_XX_X
14._SCA_19
GGTTCCTTGGTTCCCCTTCCAGCCX_XX_X
15._SCA_19
GGTTCCTTGGTTCCCCTTCCAGCCX_XX_X
16._SCA_19
GGTTCCTTGGTTCCCCTTCCAGCCX_XX_X
17._SCA_19
GGTTCCTTGGTTCCCCTTCCAGCCX_XX_X
18._SCA_19
GGTTCCTTGGTTCCCCTTCCAGCCX_XX_X
19._SCA_19
GGTTCCTTGGTTCCCCTTCCAGCCX_XX_X
20._SCA_19
GGTTCCTTGGTTCCCCTTCCAGCCX_XX_X
21._SCA_19
GGTTCCTTGGTTCCCCTTCCAGCCX_XX_X
22._GC-03-004-1-04
GGTTCCTTGGTTCCCCTTCCAGCCX_XX_X
23._SCA_19
GGTTCCTTGGTTCCCCTTCCAGCCX_XX_X
24._RUQ_46
GGTTCCTTGGTTCCCCTTCCAGCCX_XX_X
25._SCA_19
GGTTCCTTGGTTCCCCTTCCAGCCX_XX_X
26._RUQ_46
________GG______TTCCAG__X_XX_X
27._GC-03-4-1-4
GGTT____CCAACCGGAAGGAGGGX_XX_X
28._SCA_19
GGAACCCCGTTTCCTTTTCGAACCX_XX_X
29._SCA_19
GGAACCCCGTTTCCTTTTCGAACCX_XX_X
30._SCA_19
GGAACCCCGTTTCCTTTTCGAACCX_XX_X
31._GC-03-004-1-04
GGAACCCCGTTTCCTTTTCGAACCX_XX_X
32._GC-03-004-1-04
GGAACCCCGTTTCCTTTTCGAACCX_XX_X
33._GC-03-004-1-04
GGAACCCCGTTTCCTTTTCGAACCX_XX_X

Input profile: SCA_19

 
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Mars Center for Cocoa Science, Brazil
Location: 3104 14
 Dapeng Zhang, 2016

1._SCA_19 GC-03-004-1-04

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

2._SCA_19

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3104 6 > FP
 Dapeng Zhang, 2016

3._SCA_19 GC-03-004-1-04

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

4._SCA_19 GC-03-004-1-04

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

5._SCA_19 GC-03-004-1-04

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP4
 Mars, 2018

6._SCA_19 GC-03-004-1-04

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

7._SCA_19 GC-03-004-1-04

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP3
 Mars, 2018

8._SCA_19

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3104 4 > FP
 Dapeng Zhang, 2016

9._SCA_19 GC-03-004-1-04

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

10._SCA_19 GC-03-004-1-04

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12 > FP2
 Mars, 2018

11._SCA_19 GC-03-004-1-04

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

12._SCA_19 GC-03-004-1-04

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

13._SCA_19 GC-03-004-1-04

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

14._SCA_19

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3104 12 > F
 Dapeng Zhang, 2016

15._SCA_19

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3104 15
 Dapeng Zhang, 2016

16._SCA_19

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3104 13
 Dapeng Zhang, 2016

17._SCA_19

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3104 10
 Dapeng Zhang, 2016

18._SCA_19

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3104 7
 Dapeng Zhang, 2016

19._SCA_19

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3104 5
 Dapeng Zhang, 2016

20._SCA_19

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3104 2
 Dapeng Zhang, 2016

21._SCA_19

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3104 1
 Dapeng Zhang, 2016

22._SCA_19 GC-03-004-1-04

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

23._SCA_19

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3104 11
 Dapeng Zhang, 2016

24._SCA_19 RUQ_46

98.8 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

25._SCA_19

98.8 %
40 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 748
 Dapeng Zhang, 2016

26._SCA_19 RUQ_46

97.9 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

27._SCA_19 GC-03-4-1-4

48.6 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 3, Block: 1, Rep: 4, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

28._SCA_19

46.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3104 9 > FP
 Dapeng Zhang, 2016

29._SCA_19

46.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3104 16
 Dapeng Zhang, 2016

30._SCA_19

46.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3104 8
 Dapeng Zhang, 2016

31._SCA_19 GC-03-004-1-04

46.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

32._SCA_19 GC-03-004-1-04

46.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

33._SCA_19 GC-03-004-1-04

46.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

 

  Key to SNP Markers

1TcSNP25 2TcSNP32 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP193 7TcSNP226 8TcSNP230 9TcSNP242 10TcSNP372
11TcSNP429 12TcSNP469 13TcSNP529 14TcSNP534 15TcSNP560
16TcSNP577 17TcSNP591 18TcSNP619 19TcSNP645 20TcSNP723
21TcSNP872 22TcSNP891 23TcSNP917 24TcSNP929 25TcSNP953
26TcSNP994 27TcSNP998 28TcSNP1060 29TcSNP1062 30TcSNP1075
31TcSNP1144 32TcSNP1165 33TcSNP1253 34TcSNP1270 35TcSNP1350
36TcSNP1414 37TcSNP1442 38TcSNP1458 39TcSNP1484 40TcSNP1520