SNP Profiles of SCA 24   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CGAAAAGGTTCCCCAGCTAAAGGGACCC
1._SCA_24
CGAAAAGGTTCCCCAGCTAAAGGGACCC
2._RUQ_357
____AAGGTTCCCCAGCTAA__GGACCC
3._SCA_24
CGAAAAGGTTCCCCAGCTAAAGGGACCC
4._SCA_24
CGAAAAGGTTCCCCAGCTAAAGGGACCC
5._SCA_24
CGAAAAGGTTCCCCAGCTAAAGGGACCC
6._SCA_24
CGAAAAGGTTCCCCAGCTAAAGGGACCC
7._SCA_24
CGAAAAGGTTCCCCAGCTAAAGGGACCC
8._SCA_24
CGAAAAGGTTCCCCAGCTAAAGGGACCC
9._SCA_24
CGAAAAGGTTCCCCAGCTAAAGGGACCC
10._SCA_24
CGAAAAGGTTCCCCAGCTAAAGGGACCC
11._SCA_24
CGAAAAGGTTCCCCAGCTAAAGGGACCC
12._SCA_24
CGAAAAGGTTCCCCAGCTAAAGGGACCC
13._SCA_24
CGAAAAGGTTCCCCAGCTAAAGGGACCC
14._GC-03-015-2-03
CGAAAAGGTTCCCCAGCTAAAGGGACCC
15._GC-03-015-2-03
CGAAAAGGTTCCCCAGCTAAAGGGACCC
16._GC-03-015-2-03
CGAAAAGGTTCCCCAGCTAAAGGGACCC
17._GC-03-015-2-03
CGAAAAGGTTCCCCAGCTAAAGGGACCC
18._GC-03-015-2-03
CGAAAAGGTTCCCCAGCTAAAGGGACCC
19._GC-03-015-2-03
CGAAAAGGTTCCCCAGCTAAAGGGACCC
20._GC-05-167-4-20
CGAAAAGGTTCCCCAGCTAAAGGGACCC
21._GC-05-167-4-20
CGAAAAGGTTCCCCAGCTAAAGGGACCC
22._GC-05-167-4-20
CGAAAAGGTTCCCCAGCTAAAGGGACCC
23._GC-05-167-4-20
CGAAAAGGTTCCCCAGCTAAAGGGACCC
24._GC-05-167-4-20
CGAAAAGGTTCCCCAGCTAAAGGGACCC
25._RUQ_357
CGAAAAGGTTCCCCAGCTAAAGGGACCC
26._RUQ_357
CGAAAAGGTTCCCCAGCTAAAGGGACCC
27._GC-03-15-2-3
CGAAAACCAACCGGAGAGAAAG__AC__
28._GC-05-167-4-20
CGAAAACCAACCGGAGAGAAAG__AC__
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
GGCCCCTTAAGGCCTTCCCCTTCCAACC
1._SCA_24
GGCCCCTTAAGGCCTTCCCCTTCCAACC
2._RUQ_357
GGCCCCTT__GGCCTT________AACC
3._SCA_24
GGCCCCTTAGGGCCTTCCCCTTCCAACC
4._SCA_24
GGCCCCTTAGGGCCTTCCCCTTCCAACC
5._SCA_24
GGCCCCTTAGGGCCTTCCCCTTCCAACC
6._SCA_24
GGCCCCTTAGGGCCTTCCCCTTCCAACC
7._SCA_24
GGCCCCTTAGGGCCTTCCCCTTCCAACC
8._SCA_24
GGCCCCTTAGGGCCTTCCCCTTCCAACC
9._SCA_24
GGCCCCTTAGGGCCTTCCCCTTCCAACC
10._SCA_24
GGCCCCTTAGGGCCTTCCCCTTCCAACC
11._SCA_24
GGCCCCTTAGGGCCTTCCCCTTCCAACC
12._SCA_24
GGCCCCTTAGGGCCTTCCCCTTCCAACC
13._SCA_24
GGCCCCTTAGGGCCTTCCCCTTCCAACC
14._GC-03-015-2-03
GGCCCCTTAGGGCCTTCCCCTTCCAACC
15._GC-03-015-2-03
GGCCCCTTAGGGCCTTCCCCTTCCAACC
16._GC-03-015-2-03
GGCCCCTTAGGGCCTTCCCCTTCCAACC
17._GC-03-015-2-03
GGCCCCTTAGGGCCTTCCCCTTCCAACC
18._GC-03-015-2-03
GGCCCCTTAGGGCCTTCCCCTTCCAACC
19._GC-03-015-2-03
GGCCCCTTAGGGCCTTCCCCTTCCAACC
20._GC-05-167-4-20
GGCCCCTTAGGGCCTTCCCCTTCCAACC
21._GC-05-167-4-20
GGCCCCTTAGGGCCTTCCCCTTCCAACC
22._GC-05-167-4-20
GGCCCCTTAGGGCCTTCCCCTTCCAACC
23._GC-05-167-4-20
GGCCCCTTAGGGCCTTCCCCTTCCAACC
24._GC-05-167-4-20
GGCCCCTTAGGGCCTTCCCCTTCCAACC
25._RUQ_357
GGCCCCTTAAGGCCTTCCCCTTCCAACC
26._RUQ_357
GGCCCCTTAAGGCCTTCCCCTTCCAACC
27._GC-03-15-2-3
CCCCCCAA__CCGGAAGGCCTTGGAAGG
28._GC-05-167-4-20
CCCCCCAA__CCGGAAGGCCTTGGAAGG
 29 30 31 32 33 34 35 36 37 38 39 40   
_Input profile
GGAACCTTGGTTCCCTCTCCAACCX_XX_X
1._SCA_24
GGAACCTTGGTTCCCTCTCCAACCX_XX_X
2._RUQ_357
________GG______CTCCAA__X_XX_X
3._SCA_24
GGAACCTTGGTTCCCTCTCCAACCX_XX_X
4._SCA_24
GGAACCTTGGTTCCCTCTCCAACCX_XX_X
5._SCA_24
GGAACCTTGGTTCCCTCTCCAACCX_XX_X
6._SCA_24
GGAACCTTGGTTCCCTCTCCAACCX_XX_X
7._SCA_24
GGAACCTTGGTTCCCTCTCCAACCX_XX_X
8._SCA_24
GGAACCTTGGTTCCCTCTCCAACCX_XX_X
9._SCA_24
GGAACCTTGGTTCCCTCTCCAACCX_XX_X
10._SCA_24
GGAACCTTGGTTCCCTCTCCAACCX_XX_X
11._SCA_24
GGAACCTTGGTTCCCTCTCCAACCX_XX_X
12._SCA_24
GGAACCTTGGTTCCCTCTCCAACCX_XX_X
13._SCA_24
GGAACCTTGGTTCCCTCTCCAACCX_XX_X
14._GC-03-015-2-03
GGAACCTTGGTTCCCTCTCCAACCX_XX_X
15._GC-03-015-2-03
GGAACCTTGGTTCCCTCTCCAACCX_XX_X
16._GC-03-015-2-03
GGAACCTTGGTTCCCTCTCCAACCX_XX_X
17._GC-03-015-2-03
GGAACCTTGGTTCCCTCTCCAACCX_XX_X
18._GC-03-015-2-03
GGAACCTTGGTTCCCTCTCCAACCX_XX_X
19._GC-03-015-2-03
GGAACCTTGGTTCCCTCTCCAACCX_XX_X
20._GC-05-167-4-20
GGAACCTTGGTTCCCTCTCCAACCX_XX_X
21._GC-05-167-4-20
GGAACCTTGGTTCCCTCTCCAACCX_XX_X
22._GC-05-167-4-20
GGAACCTTGGTTCCCTCTCCAACCX_XX_X
23._GC-05-167-4-20
GGAACCTTGGTTCCCTCTCCAACCX_XX_X
24._GC-05-167-4-20
GGAACCTTGGTTCCCTCTCCAACCX_XX_X
25._RUQ_357
GGAACCTTGGTTCCCTCTCCAGCCX_XX_X
26._RUQ_357
GGAACCTTGGTTCCCTCTCCAGCCX_XX_X
27._GC-03-15-2-3
GGAA____CCAACCAGAGGGAAGGX_XX_X
28._GC-05-167-4-20
GGAA____CCAACCAGAGGGAAGGX_XX_X

Input profile: SCA_24

 
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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 569
 Dapeng Zhang, 2016

1._SCA_24

identical
40 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 569
 Dapeng Zhang, 2016

2._SCA_24 RUQ_357

identical
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

3._SCA_24

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3203 3
 Dapeng Zhang, 2016

4._SCA_24

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5420 3 > FP
 Dapeng Zhang, 2016

5._SCA_24

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5420 2 > FP
 Dapeng Zhang, 2016

6._SCA_24

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5420 1 > FP
 Dapeng Zhang, 2016

7._SCA_24

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5420 5
 Dapeng Zhang, 2016

8._SCA_24

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5420 4
 Dapeng Zhang, 2016

9._SCA_24

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3203 2 > FP
 Dapeng Zhang, 2016

10._SCA_24

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3203 1 > FP
 Dapeng Zhang, 2016

11._SCA_24

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3203 10
 Dapeng Zhang, 2016

12._SCA_24

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3203 9
 Dapeng Zhang, 2016

13._SCA_24

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3203 5
 Dapeng Zhang, 2016

14._SCA_24 GC-03-015-2-03

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

15._SCA_24 GC-03-015-2-03

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP4
 Mars, 2018

16._SCA_24 GC-03-015-2-03

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

17._SCA_24 GC-03-015-2-03

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

18._SCA_24 GC-03-015-2-03

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

19._SCA_24 GC-03-015-2-03

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

20._SCA_24 GC-05-167-4-20

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

21._SCA_24 GC-05-167-4-20

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

22._SCA_24 GC-05-167-4-20

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

23._SCA_24 GC-05-167-4-20

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

24._SCA_24 GC-05-167-4-20

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

25._SCA_24 RUQ_357

98.8 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

26._SCA_24 RUQ_357

98.8 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

27._SCA_24 GC-03-15-2-3

48.6 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 3, Block: 2, Rep: 3, Tree: 3
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

28._SCA_24 GC-05-167-4-20

48.6 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 4, Rep: 20, Tree: 4
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 

  Key to SNP Markers

1TcSNP25 2TcSNP32 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP193 7TcSNP226 8TcSNP230 9TcSNP242 10TcSNP372
11TcSNP429 12TcSNP469 13TcSNP529 14TcSNP534 15TcSNP560
16TcSNP577 17TcSNP591 18TcSNP619 19TcSNP645 20TcSNP723
21TcSNP872 22TcSNP891 23TcSNP917 24TcSNP929 25TcSNP953
26TcSNP994 27TcSNP998 28TcSNP1060 29TcSNP1062 30TcSNP1075
31TcSNP1144 32TcSNP1165 33TcSNP1253 34TcSNP1270 35TcSNP1350
36TcSNP1414 37TcSNP1442 38TcSNP1458 39TcSNP1484 40TcSNP1520