SNP Profiles of SCA 3 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CG	AA	AC	GG	TT	CC	AA	CT	AA	AA	GG	AA	CC	GG
1._SCA_3	CG	AA	AC	GG	TT	CC	AA	CT	AA	AA	GG	AA	CC	GG
2._GC-08-169-4-12	CG	AA	AC	GG	TT	CC	AA	CT	AA	AA	GG	AA	CC	GG
3._GC-08-169-4-12	CG	AA	AC	GG	TT	CC	AA	CT	AA	AA	GG	AA	CC	GG
4._GC-08-169-4-12	CG	AA	AC	GG	TT	CC	AA	CT	AA	AA	GG	AA	CC	GG
5._GC-08-169-4-12	CG	AA	AC	GG	TT	CC	AA	CT	AA	AA	GG	AA	CC	GG
6._GC-08-169-4-12	CG	AA	AC	GG	TT	CC	AA	CT	AA	AA	GG	AA	CC	GG
7._GC-08-169-4-12	CG	AA	AC	GG	TT	CC	AA	CT	AA	AA	GG	AA	CC	GG
8._GC-08-169-4-12	CG	AA	AC	GG	TT	CC	AA	CT	AA	AA	GG	AA	CC	GG
9._GC-08-169-4-12	CG	AA	AC	GG	TT	CC	AA	CT	AA	AA	GG	AA	CC	GG
10._GC-08-169-4-12	CG	AA	AC	GG	TT	CC	AA	CT	AA	AA	GG	AA	CC	GG
11._SCA_3	CG	AA	AC	GG	TT	CC	AA	CT	AA	AA	GG	AA	CC	GG
12._SCA_3	CG	AA	AC	GG	TT	CC	AA	CT	AA	AA	GG	AA	CC	GG
13._SCA_3	CG	AA	AC	GG	TT	CC	AA	CT	AA	AA	GG	AA	CC	GG
14._SCA_3	CG	AA	AC	GG	TT	CC	AA	CT	AA	AA	GG	AA	CC	GG
15._SCA_3	CG	AA	AC	GG	TT	CC	AA	CT	AA	AA	GG	AA	CC	GG
16._SCA_3	CG	AA	AC	GG	TT	CC	AA	CT	AA	AA	GG	AA	CC	GG
17._SCA_3	CG	AA	AC	GG	TT	CC	AA	CT	AA	AA	GG	AA	CC	GG
18._SCA_3	CG	AA	AC	GG	TT	CC	AA	CT	AA	AA	GG	AA	CC	GG
19._GC-01-123-6-20	CG	AA	AC	CC	AA	CC	AA	AG	AA	AA	__	AA	__	CC

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	CC	CC	TT	GG	GG	CC	TT	CT	CC	TT	CC	AA	CC	GG
1._SCA_3	CC	CC	TT	AA	GG	CC	TT	CT	CC	TT	CC	AA	CC	GG
2._GC-08-169-4-12	CC	CC	TT	AA	GG	CC	TT	CT	CC	TT	CC	AA	CC	GG
3._GC-08-169-4-12	CC	CC	TT	AA	GG	CC	TT	CT	CC	TT	CC	AA	CC	GG
4._GC-08-169-4-12	CC	CC	TT	AA	GG	CC	TT	CT	CC	TT	CC	AA	CC	GG
5._GC-08-169-4-12	CC	CC	TT	AA	GG	CC	TT	CT	CC	TT	CC	AA	CC	GG
6._GC-08-169-4-12	CC	CC	TT	AA	GG	CC	TT	CT	CC	TT	CC	AA	CC	GG
7._GC-08-169-4-12	CC	CC	TT	AA	GG	CC	TT	CT	CC	TT	CC	AA	CC	GG
8._GC-08-169-4-12	CC	CC	TT	AA	GG	CC	TT	CT	CC	TT	CC	AA	CC	GG
9._GC-08-169-4-12	CC	CC	TT	AA	GG	CC	TT	CT	CC	TT	CC	AA	CC	GG
10._GC-08-169-4-12	CC	CC	TT	AA	GG	CC	TT	CT	CC	TT	CC	AA	CC	GG
11._SCA_3	CC	CC	TT	AA	GG	CC	TT	CT	CC	TT	CC	AA	CC	GG
12._SCA_3	CC	CC	TT	AA	GG	CC	TT	CT	CC	TT	CC	AA	CC	GG
13._SCA_3	CC	CC	TT	AA	GG	CC	TT	CT	CC	TT	CC	AA	CC	GG
14._SCA_3	CC	CC	TT	AA	GG	CC	TT	CT	CC	TT	CC	AA	CC	GG
15._SCA_3	CC	CC	TT	AA	GG	CC	TT	CT	CC	TT	CC	AA	CC	GG
16._SCA_3	CC	CC	TT	AA	GG	CC	TT	CT	CC	TT	CC	AA	CC	GG
17._SCA_3	CC	CC	TT	AA	GG	CC	TT	CT	CC	TT	CC	AA	CC	GG
18._SCA_3	CC	CC	TT	AA	GG	CC	TT	CT	CC	TT	CC	AA	CC	GG
19._GC-01-123-6-20	CC	CC	AA	__	CC	GG	AA	AG	CC	TT	GG	AA	GG	GG

	29	30	31	32	33	34	35	36	37	38	39
_Input profile	AT	CC	TT	GT	TT	CC	CC	CT	CC	AA	CC	X_X	X_X	X_X
1._SCA_3	AT	CC	TT	GT	TT	CC	CC	CT	CC	AA	CC	X_X	X_X	X_X
2._GC-08-169-4-12	AT	CC	TT	GT	TT	CC	CC	CT	CC	AA	CC	X_X	X_X	X_X
3._GC-08-169-4-12	AT	CC	TT	GT	TT	CC	CC	CT	CC	AA	CC	X_X	X_X	X_X
4._GC-08-169-4-12	AT	CC	TT	GT	TT	CC	CC	CT	CC	AA	CC	X_X	X_X	X_X
5._GC-08-169-4-12	AT	CC	TT	GT	TT	CC	CC	CT	CC	AA	CC	X_X	X_X	X_X
6._GC-08-169-4-12	AT	CC	TT	GT	TT	CC	CC	CT	CC	AA	CC	X_X	X_X	X_X
7._GC-08-169-4-12	AT	CC	TT	GT	TT	CC	CC	CT	CC	AA	CC	X_X	X_X	X_X
8._GC-08-169-4-12	AT	CC	TT	GT	TT	CC	CC	CT	CC	AA	CC	X_X	X_X	X_X
9._GC-08-169-4-12	AT	CC	TT	GT	TT	CC	CC	CT	CC	AA	CC	X_X	X_X	X_X
10._GC-08-169-4-12	AT	CC	TT	GT	TT	CC	CC	CT	CC	AA	CC	X_X	X_X	X_X
11._SCA_3	AT	CC	TT	GT	TT	CC	CC	CT	CC	AA	CC	X_X	X_X	X_X
12._SCA_3	AT	CC	TT	GT	TT	CC	CC	CT	CC	AA	CC	X_X	X_X	X_X
13._SCA_3	AT	CC	TT	GT	TT	CC	CC	CT	CC	AA	CC	X_X	X_X	X_X
14._SCA_3	AT	CC	TT	GT	TT	CC	CC	CT	CC	AA	CC	X_X	X_X	X_X
15._SCA_3	AT	CC	TT	GT	TT	CC	CC	CT	CC	AA	CC	X_X	X_X	X_X
16._SCA_3	AT	CC	TT	GT	TT	CC	CC	CT	CC	AA	CC	X_X	X_X	X_X
17._SCA_3	AT	CC	TT	GT	TT	CC	CC	CT	CC	AA	CC	X_X	X_X	X_X
18._SCA_3	AT	CC	TT	GT	TT	CC	CC	CT	CC	AA	CC	X_X	X_X	X_X
19._GC-01-123-6-20	AT	__	__	AC	AA	CC	GG	AG	GG	AA	GG	X_X	X_X	X_X

Input profile: SCA_3

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 6B A26 T8

Dapeng Zhang, 2016

1._SCA_3

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8412 11

Dapeng Zhang, 2016

2._SCA_3 GC-08-169-4-12

97.4 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 11

Notes: 11

3._SCA_3 GC-08-169-4-12

97.4 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10

4._SCA_3 GC-08-169-4-12

97.4 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

5._SCA_3 GC-08-169-4-12

97.4 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

6._SCA_3 GC-08-169-4-12

97.4 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

7._SCA_3 GC-08-169-4-12

97.4 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

8._SCA_3 GC-08-169-4-12

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP3

9._SCA_3 GC-08-169-4-12

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP2

10._SCA_3 GC-08-169-4-12

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

11._SCA_3

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8412 3 > FP

Dapeng Zhang, 2016

12._SCA_3

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8412 2 > FP

Dapeng Zhang, 2016

13._SCA_3

97.4 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8412 1 > FP

Dapeng Zhang, 2016

14._SCA_3

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8412 10

Dapeng Zhang, 2016

15._SCA_3

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8412 9

Dapeng Zhang, 2016

16._SCA_3

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8412 7

Dapeng Zhang, 2016

17._SCA_3

97.4 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8412 5

Dapeng Zhang, 2016

18._SCA_3

97.4 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8412 4

Dapeng Zhang, 2016

19._SCA_3 GC-01-123-6-20

50 %
34 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 1, Block: 6, Rep: 20, Tree: 2 > FP1

Notes: MCCS_Structure_refs_above_0.9membership

Key to SNP Markers

Key to SNP Markers

1	TcSNP25	2	TcSNP32	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP193	7	TcSNP230	8	TcSNP242	9	TcSNP372	10	TcSNP429
11	TcSNP469	12	TcSNP529	13	TcSNP534	14	TcSNP560	15	TcSNP577
16	TcSNP591	17	TcSNP619	18	TcSNP645	19	TcSNP723	20	TcSNP872
21	TcSNP891	22	TcSNP917	23	TcSNP929	24	TcSNP953	25	TcSNP994
26	TcSNP998	27	TcSNP1060	28	TcSNP1062	29	TcSNP1075	30	TcSNP1144
31	TcSNP1165	32	TcSNP1253	33	TcSNP1270	34	TcSNP1350	35	TcSNP1414
36	TcSNP1442	37	TcSNP1458	38	TcSNP1484	39	TcSNP1520