SNP Profiles of SCA-3   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CGAAACGGTTCCCGAACTAAAAGGAACC
1._SCA_3___
CGAAACGGTTCCCGAACTAAAAGGAACC
2._SCA_3___
CGAAACGGTTCCCGAACTAAAAGGAACC
3._SCA_3___
CGAAACGGTTCCCGAACTAAAAGGAACC
4._SCA_3___
CGAAACGGTTCCCGAACTAAAAGGAACC
5._SCA_3___
CGAAACGGTTCCCGAACTAAAAGGAACC
6._SCA_3___
CGAAACGGTTCCCGAACTAAAAGGAACC
7._SCA_3___
CGAAACGGTTCCCGAACTAAAAGGAACC
8._SCA_3___
CGAAACGGTTCCCGAACTAAAAGGAACC
9._SCA_3___
CGAAACGGTTCCCGAACTAAAAGGAACC
10._SCA_3___
CGAAACGGTTCCCGAACTAAAAGGAACC
11._SCA_3___
CGAAACGGTTCCCGAACTAAAAGGAACC
12._SCA_3___
CGAAACGGTTCCCGAACTAAAAGGAACC
13._SCA_3___
CGAAACGGTTCCCGAACTAAAAGGAACC
14._SCA_3___
CGAAACGGTTCCCGAACTAAAAGGAACC
15._SCA_3___
CGAAACGGTTCCCGAACTAAAAGGAACC
16._SCA_3___
CGAAACGGTTCCCGAACTAAAAGGAACC
17._SCA_3___
CGAAACGGTTCCCGAACTAAAAGGAACC
18._SCA_3___
CGAAACGGTTCC__AACTAAAAGGAACC
19._SCA_3___
CGAAACCCAACCCGAAAGAAAA__AA__
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
GGCCCCTTAAGGCCTTCTCCTTCCAACC
1._SCA_3___
GGCCCCTTAAGGCCTTCTCCTTCCAACC
2._SCA_3___
GGCCCCTTAAGGCCTTCTCCTTCCAACC
3._SCA_3___
GGCCCCTTAAGGCCTTCTCCTTCCAACC
4._SCA_3___
GGCCCCTTAAGGCCTTCTCCTTCCAACC
5._SCA_3___
GGCCCCTTAAGGCCTTCTCCTTCCAACC
6._SCA_3___
GGCCCCTTAAGGCCTTCTCCTTCCAACC
7._SCA_3___
GGCCCCTTAAGGCCTTCTCCTTCCAACC
8._SCA_3___
GGCCCCTTAAGGCCTTCTCCTTCCAACC
9._SCA_3___
GGCCCCTTAAGGCCTTCTCCTTCCAACC
10._SCA_3___
GGCCCCTTAAGGCCTTCTCCTTCCAACC
11._SCA_3___
GGCCCCTTAAGGCCTTCTCCTTCCAACC
12._SCA_3___
GGCCCCTTAAGGCCTTCTCCTTCCAACC
13._SCA_3___
GGCCCCTTAAGGCCTTCTCCTTCCAACC
14._SCA_3___
GGCCCCTTAAGGCCTTCTCCTTCCAACC
15._SCA_3___
GGCCCCTTAAGGCCTTCTCCTTCCAACC
16._SCA_3___
GGCCCCTTAAGGCCTTCTCCTTCCAACC
17._SCA_3___
GGCCCCTTAAGGCCTTCTCCTTCCAACC
18._SCA_3___
GGCCCCTTGGGGCCTTCTCCTTCCAACC
19._SCA_3___
CCCCCCAA__CCGGAAAGCCTTGGAAGG
 29 30 31 32 33 34 35 36 37 38 39 40   
_Input profile
GGATCCTTGTTTCCCCCTCCAACCX_XX_X
1._SCA_3___
GGATCCTTGTTTCCCCCTCCAACCX_XX_X
2._SCA_3___
GGATCCTTGTTTCCCCCTCCAACCX_XX_X
3._SCA_3___
GGATCCTTGTTTCCCCCTCCAACCX_XX_X
4._SCA_3___
GGATCCTTGTTTCCCCCTCCAACCX_XX_X
5._SCA_3___
GGATCCTTGTTTCCCCCTCCAACCX_XX_X
6._SCA_3___
GGATCCTTGTTTCCCCCTCCAACCX_XX_X
7._SCA_3___
GGATCCTTGTTTCCCCCTCCAACCX_XX_X
8._SCA_3___
GGATCCTTGTTTCCCCCTCCAACCX_XX_X
9._SCA_3___
GGATCCTTGTTTCCCCCTCCAACCX_XX_X
10._SCA_3___
GGATCCTTGTTTCCCCCTCCAACCX_XX_X
11._SCA_3___
GGATCCTTGTTTCCCCCTCCAACCX_XX_X
12._SCA_3___
GGATCCTTGTTTCCCCCTCCAACCX_XX_X
13._SCA_3___
GGATCCTTGTTTCCCCCTCCAACCX_XX_X
14._SCA_3___
GGATCCTTGTTTCCCCCTCCAACCX_XX_X
15._SCA_3___
GGATCCTTGTTTCCCCCTCCAACCX_XX_X
16._SCA_3___
GGATCCTTGTTTCCCCCTCCAACCX_XX_X
17._SCA_3___
GGATCCTTGTTTCCCCCTCCAACCX_XX_X
18._SCA_3___
GGATCCTTGTTTCCCCCTCCAACCX_XX_X
19._SCA_3___
GGAT____ACAACCGGAGGGAAGGX_XX_X

Input profile: SCA_3

 
Mars Center for Cocoa Science, Brazil
Location: 8412 4
 Dapeng Zhang, 2016

1._SCA_3

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8412 11
 Dapeng Zhang, 2016

2._SCA_3 GC-08-169-4-12

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

3._SCA_3 GC-08-169-4-12

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

4._SCA_3 GC-08-169-4-12

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

5._SCA_3 GC-08-169-4-12

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

6._SCA_3 GC-08-169-4-12

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

7._SCA_3 GC-08-169-4-12

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

8._SCA_3 GC-08-169-4-12

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

9._SCA_3 GC-08-169-4-12

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

10._SCA_3 GC-08-169-4-12

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

11._SCA_3

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8412 3 > FP
 Dapeng Zhang, 2016

12._SCA_3

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8412 2 > FP
 Dapeng Zhang, 2016

13._SCA_3

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8412 1 > FP
 Dapeng Zhang, 2016

14._SCA_3

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8412 10
 Dapeng Zhang, 2016

15._SCA_3

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8412 9
 Dapeng Zhang, 2016

16._SCA_3

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8412 7
 Dapeng Zhang, 2016

17._SCA_3

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8412 5
 Dapeng Zhang, 2016

18._SCA_3

97.4 %
39 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B A26 T8
 Dapeng Zhang, 2016

19._SCA_3 GC-01-123-6-20

51.4 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 6, Rep: 20, Tree: 2 > FP1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 


  Key to SNP Markers

1TcSNP25 2TcSNP32 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP193 7TcSNP226 8TcSNP230 9TcSNP242 10TcSNP372
11TcSNP429 12TcSNP469 13TcSNP529 14TcSNP534 15TcSNP560
16TcSNP577 17TcSNP591 18TcSNP619 19TcSNP645 20TcSNP723
21TcSNP872 22TcSNP891 23TcSNP917 24TcSNP929 25TcSNP953
26TcSNP994 27TcSNP998 28TcSNP1060 29TcSNP1062 30TcSNP1075
31TcSNP1144 32TcSNP1165 33TcSNP1253 34TcSNP1270 35TcSNP1350
36TcSNP1414 37TcSNP1442 38TcSNP1458 39TcSNP1484 40TcSNP1520