1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
_Input profile | CC | AC | GG | TT | CC | CC | AA | CT | AA | AG | GG | AA | CC | GG |
1._SCA_6 | CC | AC | GG | TT | CC | CC | AA | CT | AA | AG | GG | AA | CC | GG |
2._GC-01-26-2-03 | CC | AC | GG | TT | CC | CC | AA | CT | AA | AG | GG | AA | CC | GG |
3._SCA_6 | CC | AC | GG | TT | CC | CC | AA | CT | AA | AG | GG | AA | CC | GG |
4._SCA_6 | CC | AC | GG | TT | CC | CC | AA | CT | AA | AG | GG | AA | CC | GG |
5._SCA_6 | CC | AC | GG | TT | CC | CC | AA | CT | AA | AG | GG | AA | CC | GG |
6._SCA_6 | CC | AC | GG | TT | CC | CC | AA | CT | AA | AG | GG | AA | CC | GG |
7._SCA_6 | CC | AC | GG | TT | CC | CC | AA | CT | AA | AG | GG | AA | CC | GG |
8._SCA_6 | CC | AC | GG | TT | CC | CC | AA | CT | AA | AG | GG | AA | CC | GG |
9._SCA_6 | CC | AC | GG | TT | CC | CC | AA | CT | AA | AG | GG | AA | CC | GG |
10._SCA_6 | CC | AC | GG | TT | CC | CC | AA | CT | AA | AG | GG | AA | CC | GG |
11._SCA_6 | CC | AC | GG | TT | CC | CC | AA | CT | AA | AG | GG | AA | CC | GG |
12._SCA_6 | CC | AC | GG | TT | CC | CC | AA | CT | AA | AG | GG | AA | CC | GG |
13._SCA_6 | CC | AC | GG | TT | CC | CC | AA | CT | AA | AG | GG | AA | CC | GG |
14._SCA_6 | CC | AC | GG | TT | CC | CC | AA | CT | AA | AG | GG | AA | CC | GG |
15._SCA_6 | CC | AC | GG | TT | CC | CC | AA | CT | AA | AG | GG | AA | CC | GG |
16._SCA_6 | CC | AC | GG | TT | CC | CC | AA | CT | AA | AG | GG | AA | CC | GG |
17._GC-01-26-2-03 | CC | AC | GG | TT | CC | CC | AA | CT | AA | AG | GG | AA | CC | GG |
18._GC-01-026-2-03 | CC | AC | GG | TT | CC | CC | AA | CT | AA | AG | GG | AA | CC | GG |
19._GC-01-026-2-03 | CC | AC | GG | TT | CC | CC | AA | CT | AA | AG | GG | AA | CC | GG |
20._GC-01-026-2-03 | CC | AC | GG | TT | CC | CC | AA | CT | AA | AG | GG | AA | CC | GG |
21._GC-01-026-2-03 | CC | AC | GG | TT | CC | CC | AA | CT | AA | AG | GG | AA | CC | GG |
22._GC-01-026-2-03 | CC | AC | GG | TT | CC | CC | AA | CT | AA | AG | GG | AA | CC | GG |
23._GC-01-026-2-03 | CC | AC | GG | TT | CC | CC | AA | CT | AA | AG | GG | AA | CC | GG |
24._GC-01-026-2-03 | CC | AC | GG | TT | CC | CC | AA | CT | AA | AG | GG | AA | CC | GG |
25._GC-01-026-2-03 | CC | AC | GG | TT | CC | CC | AA | CT | AA | AG | GG | AA | CC | GG |
26._GC-01-026-2-03 | CC | AC | GG | TT | CC | CC | AA | CT | AA | AG | GG | AA | CC | GG |
27._GC-01-026-2-03 | CC | AC | GG | TT | CC | CC | AA | CT | AA | AG | GG | AA | CC | GG |
28._GC-01-026-2-03 | CC | AC | GG | TT | CC | CC | AA | CT | AA | AG | GG | AA | CC | GG |
29._GC-01-026-2-03 | CC | AC | GG | TT | CC | CC | AA | CT | AA | AG | GG | AA | CC | GG |
30._GC-01-026-2-03 | CC | AC | GG | TT | CC | CC | AA | CT | AA | AG | GG | AA | CC | GG |
31._GC-01-26-2-03 | CC | AC | GG | TT | CC | CC | AA | CT | AA | AG | GG | AA | CC | GG |
32._GC-01-26-2-03 | CC | AC | GG | TT | CC | CC | AA | CT | AA | AG | GG | AA | CC | GG |
33._SCA_6 | CC | AC | GG | TT | CC | CC | AA | CT | AA | AG | GG | AA | CC | GG |
34._RUQ_234 | CC | AC | GG | TT | CC | CC | AA | CT | AA | AG | GG | AA | CC | GG |
35._SCA_6 | CC | AC | GG | TT | CC | CC | AA | CT | AA | AG | GG | AA | CC | GG |
36._SCA_6 | CC | AC | GG | TT | CC | CC | AA | CT | AA | AG | GG | AA | CC | GG |
37._SCA_6 | CC | AC | GG | TT | CC | CC | AA | CT | AA | AG | GG | AA | CC | GG |
38._SCA_6 | CC | AC | GG | TT | CC | CC | AA | CT | AA | AG | GG | AA | CC | GG |
39._RUQ_234 | __ | CC | GG | TT | CC | CC | AA | CT | AA | __ | GG | AA | CC | GG |
40._SCA_6 | CC | AC | GG | TT | CC | CC | AA | TT | AA | AG | GG | AA | CC | GG |
41._RUQ_234B | __ | AC | __ | __ | __ | __ | AA | __ | __ | __ | __ | AA | __ | __ |
42._RUQ_234 | __ | AC | __ | __ | __ | __ | AA | __ | __ | __ | __ | AA | __ | __ |
43._SCA_6 | CC | AC | GG | TT | CC | CC | AA | TT | AA | AG | GG | AA | CC | GG |
44._SCA6 | __ | CC | __ | TT | CC | GG | AA | __ | AA | __ | __ | __ | __ | __ |
45._RUQ_234 | CC | AC | CC | AA | CC | GG | AA | AG | AA | AG | __ | AA | __ | CC |
46._MITC-000343 | CC | AC | CC | AA | CC | GG | AA | AG | AA | AG | __ | AA | __ | CC |
47._MITC-000344 | CC | AC | CC | AA | CC | GG | AA | AG | AA | AG | __ | AA | __ | CC |
48._MITC-000345 | CC | AC | CC | AA | CC | GG | AA | AG | AA | AG | __ | AA | __ | CC |
49._MITC-000347 | CC | AC | CC | AA | CC | GG | AA | AG | AA | AG | __ | AA | __ | CC |
50._MITC-000348 | CC | AC | CC | AA | CC | GG | AA | AG | AA | AG | __ | AA | __ | CC |
51._MITC-000349 | CC | AC | CC | AA | CC | GG | AA | AG | AA | AG | __ | AA | __ | CC |
52._MITC-000376 | CC | AC | CC | AA | CC | GG | AA | AG | AA | AG | __ | AA | __ | CC |
53._MITC-000452 | CC | AC | CC | AA | CC | GG | AA | AG | AA | AG | __ | AA | __ | CC |
54._SCA_6_TC_(Penn_State)_Fld#_197_Plt#_6 | CG | AA | AC | AG | AC | GG | AA | GG | AA | AG | __ | AC | __ | AC |
55._SCA_6_Fld#_16_Plt#_1 | CG | AA | AC | AG | AC | GG | AA | GG | AA | AG | __ | AC | __ | AC |
15 | 16 | 17 | 18 | 19 | 20 | 21 | 22 | 23 | 24 | 25 | 26 | 27 | 28 | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
_Input profile | CG | CC | TT | AA | GG | CC | TT | CC | CC | TT | CC | AA | CT | GG |
1._SCA_6 | CG | CC | TT | AA | GG | CC | TT | CC | CC | TT | CC | AA | CT | GG |
2._GC-01-26-2-03 | CG | CC | TT | AA | GG | CC | TT | CC | CC | TT | CC | AA | CT | GG |
3._SCA_6 | CG | CC | TT | AA | GG | CC | TT | CC | CC | TT | CC | AA | CT | GG |
4._SCA_6 | CG | CC | TT | AA | GG | CC | TT | CC | CC | TT | CC | AA | CT | GG |
5._SCA_6 | CG | CC | TT | AA | GG | CC | TT | CC | CC | TT | CC | AA | CT | GG |
6._SCA_6 | CG | CC | TT | AA | GG | CC | TT | CC | CC | TT | CC | AA | CT | GG |
7._SCA_6 | CG | CC | TT | AA | GG | CC | TT | CC | CC | TT | CC | AA | CT | GG |
8._SCA_6 | CG | CC | TT | AA | GG | CC | TT | CC | CC | TT | CC | AA | CT | GG |
9._SCA_6 | CG | CC | TT | AA | GG | CC | TT | CC | CC | TT | CC | AA | CT | GG |
10._SCA_6 | CG | CC | TT | AA | GG | CC | TT | CC | CC | TT | CC | AA | CT | GG |
11._SCA_6 | CG | CC | TT | AA | GG | CC | TT | CC | CC | TT | CC | AA | CT | GG |
12._SCA_6 | CG | CC | TT | AA | GG | CC | TT | CC | CC | TT | CC | AA | CT | GG |
13._SCA_6 | CG | CC | TT | AA | GG | CC | TT | CC | CC | TT | CC | AA | CT | GG |
14._SCA_6 | CG | CC | TT | AA | GG | CC | TT | CC | CC | TT | CC | AA | CT | GG |
15._SCA_6 | CG | CC | TT | AA | GG | CC | TT | CC | CC | TT | CC | AA | CT | GG |
16._SCA_6 | CG | CC | TT | AA | GG | CC | TT | CC | CC | TT | CC | AA | CT | GG |
17._GC-01-26-2-03 | CG | CC | TT | AA | GG | CC | TT | CC | CC | TT | CC | AA | CT | GG |
18._GC-01-026-2-03 | CG | CC | TT | AA | GG | CC | TT | CC | CC | TT | CC | AA | CT | GG |
19._GC-01-026-2-03 | CG | CC | TT | AA | GG | CC | TT | CC | CC | TT | CC | AA | CT | GG |
20._GC-01-026-2-03 | CG | CC | TT | AA | GG | CC | TT | CC | CC | TT | CC | AA | CT | GG |
21._GC-01-026-2-03 | CG | CC | TT | AA | GG | CC | TT | CC | CC | TT | CC | AA | CT | GG |
22._GC-01-026-2-03 | CG | CC | TT | AA | GG | CC | TT | CC | CC | TT | CC | AA | CT | GG |
23._GC-01-026-2-03 | CG | CC | TT | AA | GG | CC | TT | CC | CC | TT | CC | AA | CT | GG |
24._GC-01-026-2-03 | CG | CC | TT | AA | GG | CC | TT | CC | CC | TT | CC | AA | CT | GG |
25._GC-01-026-2-03 | CG | CC | TT | AA | GG | CC | TT | CC | CC | TT | CC | AA | CT | GG |
26._GC-01-026-2-03 | CG | CC | TT | AA | GG | CC | TT | CC | CC | TT | CC | AA | CT | GG |
27._GC-01-026-2-03 | CG | CC | TT | AA | GG | CC | TT | CC | CC | TT | CC | AA | CT | GG |
28._GC-01-026-2-03 | CG | CC | TT | AA | GG | CC | TT | CC | CC | TT | CC | AA | CT | GG |
29._GC-01-026-2-03 | CG | CC | TT | AA | GG | CC | TT | CC | CC | TT | CC | AA | CT | GG |
30._GC-01-026-2-03 | CG | CC | TT | AA | GG | CC | TT | CC | CC | TT | CC | AA | CT | GG |
31._GC-01-26-2-03 | CG | CC | TT | AA | GG | CC | TT | CC | CC | TT | CC | AA | CT | GG |
32._GC-01-26-2-03 | CG | CC | TT | AA | GG | CC | TT | CC | CC | TT | CC | AA | CT | GG |
33._SCA_6 | CG | CC | TT | AA | GG | CC | TT | CC | CC | TT | CC | AA | CT | GG |
34._RUQ_234 | CG | CC | TT | AG | GG | CC | TT | CC | CC | TT | CC | AA | CT | GG |
35._SCA_6 | CG | CC | TT | AG | GG | CC | TT | CC | CC | TT | CC | AA | CT | GG |
36._SCA_6 | CG | CC | TT | AG | GG | CC | TT | CC | CC | TT | CC | AA | CT | GG |
37._SCA_6 | CG | CC | TT | AG | GG | CC | TT | CC | CC | TT | CC | AA | CT | GG |
38._SCA_6 | CG | CC | TT | AG | GG | CC | TT | CC | CC | TT | CC | AA | CT | GG |
39._RUQ_234 | CG | CC | TT | __ | GG | CC | TT | __ | __ | __ | __ | AA | CT | __ |
40._SCA_6 | CG | CC | TT | AG | GG | CC | TT | CC | CC | TT | CC | AA | CT | GG |
41._RUQ_234B | CG | CC | __ | AG | GG | CC | __ | __ | __ | __ | __ | AA | __ | GG |
42._RUQ_234 | CG | CC | __ | AG | GG | CC | __ | __ | __ | __ | __ | AA | __ | GG |
43._SCA_6 | CG | CC | TT | AG | GG | CC | TT | CT | CC | TT | CC | AA | CC | GG |
44._SCA6 | CG | CC | __ | __ | __ | GG | TT | __ | __ | __ | CC | __ | CT | __ |
45._RUQ_234 | CG | CC | AA | __ | CC | GG | AA | GG | CC | TT | GG | AA | AG | GG |
46._MITC-000343 | CG | CC | AA | __ | CC | GG | AA | GG | CC | TT | GG | AA | AG | GG |
47._MITC-000344 | CG | CC | AA | __ | CC | GG | AA | GG | CC | TT | GG | AA | AG | GG |
48._MITC-000345 | CG | CC | AA | __ | CC | GG | AA | GG | CC | TT | GG | AA | AG | GG |
49._MITC-000347 | CG | CC | AA | __ | CC | GG | AA | GG | CC | TT | GG | AA | AG | GG |
50._MITC-000348 | CG | CC | AA | __ | CC | GG | AA | GG | CC | TT | GG | AA | AG | GG |
51._MITC-000349 | CG | CC | AA | __ | CC | GG | AA | GG | CC | TT | GG | AA | AG | GG |
52._MITC-000376 | CG | CC | AA | __ | CC | GG | AA | GG | CC | TT | GG | AA | AG | GG |
53._MITC-000452 | CG | CC | AA | __ | CC | GG | AA | GG | CC | TT | GG | AA | AG | GG |
54._SCA_6_TC_(Penn_State)_Fld#_197_Plt#_6 | CG | AC | AA | __ | CC | CG | AG | AG | CC | AT | AG | AG | GG | AG |
55._SCA_6_Fld#_16_Plt#_1 | CG | AC | AA | __ | CC | CG | AG | AG | CC | AT | AG | AG | GG | AG |
29 | 30 | 31 | 32 | 33 | 34 | 35 | 36 | 37 | 38 | 39 | ||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
_Input profile | AT | CC | TT | GG | CT | CC | CC | CT | CC | AG | CC | X_X | X_X | X_X |
1._SCA_6 | AT | CC | TT | GG | CT | CC | CC | CT | CC | AG | CC | X_X | X_X | X_X |
2._GC-01-26-2-03 | AT | CC | TT | GG | CT | CC | CC | CT | CC | AG | CC | X_X | X_X | X_X |
3._SCA_6 | AT | CC | TT | GG | CT | CC | CC | CT | CC | AG | CC | X_X | X_X | X_X |
4._SCA_6 | AT | CC | TT | GG | CT | CC | CC | CT | CC | AG | CC | X_X | X_X | X_X |
5._SCA_6 | AT | CC | TT | GG | CT | CC | CC | CT | CC | AG | CC | X_X | X_X | X_X |
6._SCA_6 | AT | CC | TT | GG | CT | CC | CC | CT | CC | AG | CC | X_X | X_X | X_X |
7._SCA_6 | AT | CC | TT | GG | CT | CC | CC | CT | CC | AG | CC | X_X | X_X | X_X |
8._SCA_6 | AT | CC | TT | GG | CT | CC | CC | CT | CC | AG | CC | X_X | X_X | X_X |
9._SCA_6 | AT | CC | TT | GG | CT | CC | CC | CT | CC | AG | CC | X_X | X_X | X_X |
10._SCA_6 | AT | CC | TT | GG | CT | CC | CC | CT | CC | AG | CC | X_X | X_X | X_X |
11._SCA_6 | AT | CC | TT | GG | CT | CC | CC | CT | CC | AG | CC | X_X | X_X | X_X |
12._SCA_6 | AT | CC | TT | GG | CT | CC | CC | CT | CC | AG | CC | X_X | X_X | X_X |
13._SCA_6 | AT | CC | TT | GG | CT | CC | CC | CT | CC | AG | CC | X_X | X_X | X_X |
14._SCA_6 | AT | CC | TT | GG | CT | CC | CC | CT | CC | AG | CC | X_X | X_X | X_X |
15._SCA_6 | AT | CC | TT | GG | CT | CC | CC | CT | CC | AG | CC | X_X | X_X | X_X |
16._SCA_6 | AT | CC | TT | GG | CT | CC | CC | CT | CC | AG | CC | X_X | X_X | X_X |
17._GC-01-26-2-03 | AT | CC | TT | GG | CT | CC | CC | CT | CC | AG | CC | X_X | X_X | X_X |
18._GC-01-026-2-03 | AT | CC | TT | GG | CT | CC | CC | CT | CC | AG | CC | X_X | X_X | X_X |
19._GC-01-026-2-03 | AT | CC | TT | GG | CT | CC | CC | CT | CC | AG | CC | X_X | X_X | X_X |
20._GC-01-026-2-03 | AT | CC | TT | GG | CT | CC | CC | CT | CC | AG | CC | X_X | X_X | X_X |
21._GC-01-026-2-03 | AT | CC | TT | GG | CT | CC | CC | CT | CC | AG | CC | X_X | X_X | X_X |
22._GC-01-026-2-03 | AT | CC | TT | GG | CT | CC | CC | CT | CC | AG | CC | X_X | X_X | X_X |
23._GC-01-026-2-03 | AT | CC | TT | GG | CT | CC | CC | CT | CC | AG | CC | X_X | X_X | X_X |
24._GC-01-026-2-03 | AT | CC | TT | GG | CT | CC | CC | CT | CC | AG | CC | X_X | X_X | X_X |
25._GC-01-026-2-03 | AT | CC | TT | GG | CT | CC | CC | CT | CC | AG | CC | X_X | X_X | X_X |
26._GC-01-026-2-03 | AT | CC | TT | GG | CT | CC | CC | CT | CC | AG | CC | X_X | X_X | X_X |
27._GC-01-026-2-03 | AT | CC | TT | GG | CT | CC | CC | CT | CC | AG | CC | X_X | X_X | X_X |
28._GC-01-026-2-03 | AT | CC | TT | GG | CT | CC | CC | CT | CC | AG | CC | X_X | X_X | X_X |
29._GC-01-026-2-03 | AT | CC | TT | GG | CT | CC | CC | CT | CC | AG | CC | X_X | X_X | X_X |
30._GC-01-026-2-03 | AT | CC | TT | GG | CT | CC | CC | CT | CC | AG | CC | X_X | X_X | X_X |
31._GC-01-26-2-03 | AT | CC | TT | GG | CT | CC | CC | CT | CC | AG | CC | X_X | X_X | X_X |
32._GC-01-26-2-03 | AT | CC | TT | GG | CT | CC | __ | CT | CC | AG | CC | X_X | X_X | X_X |
33._SCA_6 | AT | CC | TT | GG | CT | CC | __ | CT | CC | AG | CC | X_X | X_X | X_X |
34._RUQ_234 | AT | CC | TT | GG | CT | CC | CC | CT | CC | AG | CC | X_X | X_X | X_X |
35._SCA_6 | AT | CC | TT | GG | CT | CC | CC | CT | CC | AG | CC | X_X | X_X | X_X |
36._SCA_6 | AT | CC | TT | GG | CT | CC | CC | CT | CC | AG | CC | X_X | X_X | X_X |
37._SCA_6 | AT | CC | TT | GG | CT | CC | CC | CT | CC | AG | CC | X_X | X_X | X_X |
38._SCA_6 | AT | CC | TT | GG | CT | CC | CC | CT | CC | AG | CC | X_X | X_X | X_X |
39._RUQ_234 | __ | __ | __ | GG | __ | __ | __ | CT | CC | AG | __ | X_X | X_X | X_X |
40._SCA_6 | AT | CC | TT | GG | CT | CC | CC | CT | CC | AG | CC | X_X | X_X | X_X |
41._RUQ_234B | __ | CC | __ | GG | __ | __ | __ | __ | CC | __ | __ | X_X | X_X | X_X |
42._RUQ_234 | __ | CC | __ | GG | __ | __ | __ | __ | CC | __ | __ | X_X | X_X | X_X |
43._SCA_6 | AT | CC | TT | GG | TT | CC | CC | TT | CC | AG | CC | X_X | X_X | X_X |
44._SCA6 | __ | __ | __ | __ | __ | __ | __ | __ | GG | __ | __ | X_X | X_X | X_X |
45._RUQ_234 | AT | __ | __ | CC | AG | CC | GG | AG | GG | AG | GG | X_X | X_X | X_X |
46._MITC-000343 | AT | __ | __ | CC | AG | CC | GG | AG | GG | AG | GG | X_X | X_X | X_X |
47._MITC-000344 | AT | __ | __ | CC | AG | CC | GG | AG | GG | AG | GG | X_X | X_X | X_X |
48._MITC-000345 | AT | __ | __ | CC | AG | CC | GG | AG | GG | AG | GG | X_X | X_X | X_X |
49._MITC-000347 | AT | __ | __ | CC | AG | CC | GG | AG | GG | AG | GG | X_X | X_X | X_X |
50._MITC-000348 | AT | __ | __ | CC | AG | CC | GG | AG | GG | AG | GG | X_X | X_X | X_X |
51._MITC-000349 | AT | __ | __ | CC | AG | CC | GG | AG | GG | AG | GG | X_X | X_X | X_X |
52._MITC-000376 | AT | __ | __ | CC | AG | CC | GG | AG | GG | AG | GG | X_X | X_X | X_X |
53._MITC-000452 | AT | __ | __ | CC | AG | CC | GG | AG | GG | AG | GG | X_X | X_X | X_X |
54._SCA_6_TC_(Penn_State)_Fld#_197_Plt#_6 | AT | __ | __ | AC | GG | AC | AG | GG | CG | AG | AG | X_X | X_X | X_X |
55._SCA_6_Fld#_16_Plt#_1 | AT | __ | __ | AC | GG | AC | AG | GG | CG | AG | AG | X_X | X_X | X_X |
1 | TcSNP25 | 2 | TcSNP144 | 3 | TcSNP150 | 4 | TcSNP151 | 5 | TcSNP193 |
6 | TcSNP226 | 7 | TcSNP230 | 8 | TcSNP242 | 9 | TcSNP372 | 10 | TcSNP429 |
11 | TcSNP469 | 12 | TcSNP529 | 13 | TcSNP534 | 14 | TcSNP560 | 15 | TcSNP577 |
16 | TcSNP591 | 17 | TcSNP619 | 18 | TcSNP645 | 19 | TcSNP723 | 20 | TcSNP872 |
21 | TcSNP891 | 22 | TcSNP917 | 23 | TcSNP929 | 24 | TcSNP953 | 25 | TcSNP994 |
26 | TcSNP998 | 27 | TcSNP1060 | 28 | TcSNP1062 | 29 | TcSNP1075 | 30 | TcSNP1144 |
31 | TcSNP1165 | 32 | TcSNP1253 | 33 | TcSNP1270 | 34 | TcSNP1350 | 35 | TcSNP1414 |
36 | TcSNP1442 | 37 | TcSNP1458 | 38 | TcSNP1484 | 39 | TcSNP1520 |