SNP Profiles of SIAL 169   View Data

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 Key

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_Input profile
GGACTTCCAACCAACCAAGGAACCTTTT
1._GC-01-041-2-18
GGACTTCCAACCAACCAAGGAACCTTTT
2._GC-01-041-2-18
GGACTTCCAACCAACCAAGGAACCTTTT
3._GC-01-041-2-18
GGACTTCCAACCAACCAAGGAACCTTTT
4._GC-01-041-2-18
GGACTTCCAACCAACCAAGGAACCTTTT
5._GC-01-041-2-18
GGACTTCCAACCAACCAAGGAACCTTTT
6._GC-01-041-2-18
GGACTTCCAACCAACCAAGGAACCTTTT
7._GC-01-041-2-18
GGACTTCCAACCAACCAAGGAACCTTTT
8._GC-01-041-2-18
GGACTTCCAACCAACCAAGGAACCTTTT
9._SIAL_169
GGACTTCCAACCAACCAAGGAACCTTTT
10._SIAL_169
GGACTTCCAACCAACCAAGGAACCTTTT
11._SIAL_169
GGACTTCCAACCAACCAAGGAACCTTTT
12._SIAL_169
GGACTTCCAACCAACCAAGGAACCTTTT
13._SIAL_169
GGACTTCCAACCAACCAAGGAACCTTTT
14._SIAL_169
GGACTTCCAACCAACCAAGGAACCTTTT
15._SIAL_169
GGACTTCCAACCAACCAAGGAACCTTTT
16._SIAL_169
GGAATTCCAACCAACCAAGGAACCCTTT
17._GC-01-41-2-18
GGACAAGGAAGGAAGGAAGG__CC__AA
 1516171819202122232425262728
_Input profile
CGACGGGGGGCCTTCGAATTGGCCAAAA
1._GC-01-041-2-18
CGACGGGGGGCCTTCGAATTGGCCAAAA
2._GC-01-041-2-18
CGACGGGGGGCCTTCGAATTGGCCAAAA
3._GC-01-041-2-18
CGACGGGGGGCCTTCGAATTGGCCAAAA
4._GC-01-041-2-18
CGACGGGGGGCCTTCGAATTGGCCAAAA
5._GC-01-041-2-18
CGACGGGGGGCCTTCGAATTGGCCAAAA
6._GC-01-041-2-18
CGACGGGGGGCCTTCGAATTGGCCAAAA
7._GC-01-041-2-18
CGACGGGGGGCCTTCGAATTGGCCAAAA
8._GC-01-041-2-18
CGACGGGGGGCCTTCGAATTGGCCAAAA
9._SIAL_169
CGACGGGGGGCCTTCGAATTGGCCAAAA
10._SIAL_169
CGACGGGGGGCCTTCGAATTGGCCAAAA
11._SIAL_169
CGACGGGGGGCCTTCGAATTGGCCAAAA
12._SIAL_169
CGACGGGGGGCCTTCGAATTGGCCAAAA
13._SIAL_169
CGACGGGGGGCCTTCGAATTGGCCAAAA
14._SIAL_169
CGACGGGGGGCCTTCGAATTGGCCAAAA
15._SIAL_169
CGACGGGGGGCCTTCGAATTGGCCAAAA
16._SIAL_169
GGAAAAGGGGCCTTGGAATTGGCCAAAA
17._GC-01-41-2-18
CGAC__CCCCGGAACGAAAAGGGGAAAA
 29303132333435363738    
_Input profile
CTCCTTCCAATTCCGGAGTTX_XX_XX_XX_X
1._GC-01-041-2-18
CTCCTTCCAATTCCGGAGTTX_XX_XX_XX_X
2._GC-01-041-2-18
CTCCTTCCAATTCCGGAGTTX_XX_XX_XX_X
3._GC-01-041-2-18
CTCCTTCCAATTCCGGAGTTX_XX_XX_XX_X
4._GC-01-041-2-18
CTCCTTCCAATTCCGGAGTTX_XX_XX_XX_X
5._GC-01-041-2-18
CTCCTTCCAATTCCGGAGTTX_XX_XX_XX_X
6._GC-01-041-2-18
CTCCTTCCAATTCCGGAGTTX_XX_XX_XX_X
7._GC-01-041-2-18
CTCCTTCCAATTCCGGAGTTX_XX_XX_XX_X
8._GC-01-041-2-18
CTCCTTCCAATTCCGGAGTTX_XX_XX_XX_X
9._SIAL_169
CTCCTTCCAATTCCGGAGTTX_XX_XX_XX_X
10._SIAL_169
CTCCTTCCAATTCCGGAGTTX_XX_XX_XX_X
11._SIAL_169
CTCCTTCCAATTCCGGAGTTX_XX_XX_XX_X
12._SIAL_169
CTCCTTCCAATTCCGGAGTTX_XX_XX_XX_X
13._SIAL_169
CTCCTTCCAATTCCGGAGTTX_XX_XX_XX_X
14._SIAL_169
CTCCTTCCAATTCCGGAGTTX_XX_XX_XX_X
15._SIAL_169
CTCCTTCCAATTCCGGAGTTX_XX_XX_XX_X
16._SIAL_169
TTCCTTCCAATTTTGGAGTTX_XX_XX_XX_X
17._GC-01-41-2-18
____AAGGAAAAGGCCAGAAX_XX_XX_XX_X

Input profile: SIAL_169

 
Mars Center for Cocoa Science, Brazil
Location: 1214 9
 Dapeng Zhang, 2016

1._SIAL_169 GC-01-041-2-18

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13 > FP3
 Mars, 2018

2._SIAL_169 GC-01-041-2-18

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12 > FP2
 Mars, 2018

3._SIAL_169 GC-01-041-2-18

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

4._SIAL_169 GC-01-041-2-18

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

5._SIAL_169 GC-01-041-2-18

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8 > FP4
 Mars, 2018

6._SIAL_169 GC-01-041-2-18

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

7._SIAL_169 GC-01-041-2-18

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

8._SIAL_169 GC-01-041-2-18

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP1
 Mars, 2018

9._SIAL_169

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1214 8 > FP
 Dapeng Zhang, 2016

10._SIAL_169

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1214 2 > FP
 Dapeng Zhang, 2016

11._SIAL_169

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1214 13 > F
 Dapeng Zhang, 2016

12._SIAL_169

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1214 12 > F
 Dapeng Zhang, 2016

13._SIAL_169

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1214 10
 Dapeng Zhang, 2016

14._SIAL_169

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1214 6
 Dapeng Zhang, 2016

15._SIAL_169

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1214 4
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

16._SIAL_169

86.8 %
38 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

17._SIAL_169 GC-01-41-2-18

48.5 %
33 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 14, Tree: 4
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 


  Key to SNP Markers

1TcSNP25 2TcSNP144 3TcSNP150 4TcSNP151 5TcSNP193
6TcSNP226 7TcSNP230 8TcSNP242 9TcSNP372 10TcSNP429
11TcSNP469 12TcSNP529 13TcSNP534 14TcSNP560 15TcSNP577
16TcSNP591 17TcSNP645 18TcSNP723 19TcSNP872 20TcSNP891
21TcSNP917 22TcSNP929 23TcSNP953 24TcSNP994 25TcSNP998
26TcSNP1060 27TcSNP1062 28TcSNP1075 29TcSNP1144 30TcSNP1165
31TcSNP1253 32TcSNP1270 33TcSNP1350 34TcSNP1414 35TcSNP1442
36TcSNP1458 37TcSNP1484 38TcSNP1520