SNP Profiles of SIAL 169   View Data

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 Key

 1234567891011121314
_Input profile
GGTTACTTCCAACCAACCAAGGAACCTT
1._GC-01-041-2-18
GGTTACTTCCAACCAACCAAGGAACCTT
2._GC-01-041-2-18
GGTTACTTCCAACCAACCAAGGAACCTT
3._GC-01-041-2-18
GGTTACTTCCAACCAACCAAGGAACCTT
4._GC-01-041-2-18
GGTTACTTCCAACCAACCAAGGAACCTT
5._GC-01-041-2-18
GGTTACTTCCAACCAACCAAGGAACCTT
6._GC-01-041-2-18
GGTTACTTCCAACCAACCAAGGAACCTT
7._GC-01-041-2-18
GGTTACTTCCAACCAACCAAGGAACCTT
8._SIAL_169
GGTTACTTCCAACCAACCAAGGAACCTT
9._SIAL_169
GGTTACTTCCAACCAACCAAGGAACCTT
10._SIAL_169
GGTTACTTCCAACCAACCAAGGAACCTT
11._SIAL_169
GGTTACTTCCAACCAACCAAGGAACCTT
12._SIAL_169
GGTTACTTCCAACCAACCAAGGAACCTT
13._SIAL_169
GGTTACTTCCAACCAACCAAGGAACCTT
14._GC-01-041-2-18
GG_ACTTCCAACCAACCAAGGAACCTT
15._SIAL_169
GG_ACTTCCAACCAACCAAGGAACCTT
16._SIAL_169
GGTTAATTCCAACCAACCAAGGAACCCT
17._GC-01-41-2-18
GG_ACAAGGAAGGAAGGAAGG_CC_
 1516171819202122232425262728
_Input profile
TTCGACTTGGGGGGCCTTCGAATTGGCC
1._GC-01-041-2-18
TTCGACTTGGGGGGCCTTCGAATTGGCC
2._GC-01-041-2-18
TTCGACTTGGGGGGCCTTCGAATTGGCC
3._GC-01-041-2-18
TTCGACTTGGGGGGCCTTCGAATTGGCC
4._GC-01-041-2-18
TTCGACTTGGGGGGCCTTCGAATTGGCC
5._GC-01-041-2-18
TTCGACTTGGGGGGCCTTCGAATTGGCC
6._GC-01-041-2-18
TTCGACTTGGGGGGCCTTCGAATTGGCC
7._GC-01-041-2-18
TTCGACTTGGGGGGCCTTCGAATTGGCC
8._SIAL_169
TTCGACTTGGGGGGCCTTCGAATTGGCC
9._SIAL_169
TTCGACTTGGGGGGCCTTCGAATTGGCC
10._SIAL_169
TTCGACTTGGGGGGCCTTCGAATTGGCC
11._SIAL_169
TTCGACTTGGGGGGCCTTCGAATTGGCC
12._SIAL_169
TTCGACTTGGGGGGCCTTCGAATTGGCC
13._SIAL_169
TTCGACTTGGGGGGCCTTCGAATTGGCC
14._GC-01-041-2-18
TTCGAC_GGGGGGCCTTCGAATTGGCC
15._SIAL_169
TTCGAC_GGGGGGCCTTCGAATTGGCC
16._SIAL_169
TTGGAATTAAGGGGCCTTGGAATTGGCC
17._GC-01-41-2-18
AACGACAA_CCCCGGAACGAAAAGGGG
 293031323334353637383940  
_Input profile
AAAACTCCTTCCAATTCCGGAGTTX_XX_X
1._GC-01-041-2-18
AAAACTCCTTCCAATTCCGGAGTTX_XX_X
2._GC-01-041-2-18
AAAACTCCTTCCAATTCCGGAGTTX_XX_X
3._GC-01-041-2-18
AAAACTCCTTCCAATTCCGGAGTTX_XX_X
4._GC-01-041-2-18
AAAACTCCTTCCAATTCCGGAGTTX_XX_X
5._GC-01-041-2-18
AAAACTCCTTCCAATTCCGGAGTTX_XX_X
6._GC-01-041-2-18
AAAACTCCTTCCAATTCCGGAGTTX_XX_X
7._GC-01-041-2-18
AAAACTCCTTCCAATTCCGGAGTTX_XX_X
8._SIAL_169
AAAACTCCTTCCAATTCCGGAGTTX_XX_X
9._SIAL_169
AAAACTCCTTCCAATTCCGGAGTTX_XX_X
10._SIAL_169
AAAACTCCTTCCAATTCCGGAGTTX_XX_X
11._SIAL_169
AAAACTCCTTCCAATTCCGGAGTTX_XX_X
12._SIAL_169
AAAACTCCTTCCAATTCCGGAGTTX_XX_X
13._SIAL_169
AAAACTCCTTCCAATTCCGGAGTTX_XX_X
14._GC-01-041-2-18
AAAACTCCTTCCAATTCCGGAGTTX_XX_X
15._SIAL_169
AAAACTCCTTCCAATTCCGGAGTTX_XX_X
16._SIAL_169
AAAATTCCTTCCAATTTTGGAGTTX_XX_X
17._GC-01-41-2-18
AAAA__AAGGAAAAGGCCAGAAX_XX_X

Input profile: SIAL_169

 
Mars Center for Cocoa Science, Brazil
Location: 1214 12 > F
 Dapeng Zhang, 2016

1._SIAL_169 GC-01-041-2-18

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13 > FP3
 Mars, 2018

2._SIAL_169 GC-01-041-2-18

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12 > FP2
 Mars, 2018

3._SIAL_169 GC-01-041-2-18

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

4._SIAL_169 GC-01-041-2-18

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8 > FP4
 Mars, 2018

5._SIAL_169 GC-01-041-2-18

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

6._SIAL_169 GC-01-041-2-18

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

7._SIAL_169 GC-01-041-2-18

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP1
 Mars, 2018

8._SIAL_169

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1214 8 > FP
 Dapeng Zhang, 2016

9._SIAL_169

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1214 2 > FP
 Dapeng Zhang, 2016

10._SIAL_169

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1214 13 > F
 Dapeng Zhang, 2016

11._SIAL_169

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1214 10
 Dapeng Zhang, 2016

12._SIAL_169

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1214 6
 Dapeng Zhang, 2016

13._SIAL_169

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1214 4
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

14._SIAL_169 GC-01-041-2-18

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

15._SIAL_169

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1214 9
 Dapeng Zhang, 2016

16._SIAL_169

87.5 %
40 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

17._SIAL_169 GC-01-41-2-18

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 14, Tree: 4
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 


  Key to SNP Markers

1TcSNP25 2TcSNP32 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP193 7TcSNP226 8TcSNP230 9TcSNP242 10TcSNP372
11TcSNP429 12TcSNP469 13TcSNP529 14TcSNP534 15TcSNP560
16TcSNP577 17TcSNP591 18TcSNP619 19TcSNP645 20TcSNP723
21TcSNP872 22TcSNP891 23TcSNP917 24TcSNP929 25TcSNP953
26TcSNP994 27TcSNP998 28TcSNP1060 29TcSNP1062 30TcSNP1075
31TcSNP1144 32TcSNP1165 33TcSNP1253 34TcSNP1270 35TcSNP1350
36TcSNP1414 37TcSNP1442 38TcSNP1458 39TcSNP1484 40TcSNP1520