SNP Profiles of UCAYALI 12   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
GGAAACGGTTCCCCAACTAAAGGGACCC
1._GC-08-185-4-28
GGAAACGGTTCCCCAACTAAAGGGACCC
2._GC-08-185-4-28
GGAAACGGTTCCCCAACTAAAGGGACCC
3._GC-08-185-4-28
GGAAACGGTTCCCCAACTAAAGGGACCC
4._GC-08-185-4-28
GGAAACGGTTCCCCAACTAAAGGGACCC
5._GC-08-184-4-27
GGAAACGGTTCCCCAACTAAAGGGACCC
6._GC-08-184-4-27
GGAAACGGTTCCCCAACTAAAGGGACCC
7._GC-08-184-4-27
GGAAACGGTTCCCCAACTAAAGGGACCC
8._GC-08-184-4-27
GGAAACGGTTCCCCAACTAAAGGGACCC
9._U_12_[PER]
GGAAACGGTTCCCCAACTAAAGGGACCC
10._U_12_[PER]
GGAAACGGTTCCCCAACTAAAGGGACCC
11._U_12_[PER]
GGAAACGGTTCCCCAACTAAAGGGACCC
12._U_12_[PER]
GGAAACGGTTCCCCAACTAAAGGGACCC
13._U_12_[PER]
GGAAACGGTTCCCCAACTAAAGGGACCC
14._U_12_[PER]
GGAAACGGTTCCCCAACTAAAGGGACCC
15._U_12_[PER]
GGAAACGGTTCCCCAACTAAAGGGACCC
16._U_12_[PER]
GGAAACGGTTCCCCAACTAAAGGGACCC
17._GC-08-185-4-28
GGAAACGGTTCCCCAACTAAAGGGACCC
18._GC-08-184-4-27
GGAAACGGTTCCCCAACTAAAGGGACCC
19._U_12_[PER]
GGAAACGGTTCCCCAACTAAAGGGACCC
20._U_12_[PER]
GGAAACGGTTCCCCAACTAAAGGGACCC
21._U_12_[PER]
CGATCCGTCTCCCCAGTTATAAAGACCT
22._GC-02-4-1-4
GGAAACCCAACCGGAAAGAAAG__AC__
23._U_12_Fld#_179_Plt#_5
CGATCCACAGCCGGAGAGATAA__AC__
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
GGCGCCTTAAGGCCTTCTCCTTCCAACC
1._GC-08-185-4-28
GGCGCCTTAAGGCCTTCTCCTTCCAACC
2._GC-08-185-4-28
GGCGCCTTAAGGCCTTCTCCTTCCAACC
3._GC-08-185-4-28
GGCGCCTTAAGGCCTTCTCCTTCCAACC
4._GC-08-185-4-28
GGCGCCTTAAGGCCTTCTCCTTCCAACC
5._GC-08-184-4-27
GGCGCCTTAAGGCCTTCTCCTTCCAACC
6._GC-08-184-4-27
GGCGCCTTAAGGCCTTCTCCTTCCAACC
7._GC-08-184-4-27
GGCGCCTTAAGGCCTTCTCCTTCCAACC
8._GC-08-184-4-27
GGCGCCTTAAGGCCTTCTCCTTCCAACC
9._U_12_[PER]
GGCGCCTTAAGGCCTTCTCCTTCCAACC
10._U_12_[PER]
GGCGCCTTAAGGCCTTCTCCTTCCAACC
11._U_12_[PER]
GGCGCCTTAAGGCCTTCTCCTTCCAACC
12._U_12_[PER]
GGCGCCTTAAGGCCTTCTCCTTCCAACC
13._U_12_[PER]
GGCGCCTTAAGGCCTTCTCCTTCCAACC
14._U_12_[PER]
GGCGCCTTAAGGCCTTCTCCTTCCAACC
15._U_12_[PER]
GGCGCCTTAAGGCCTTCTCCTTCCAACC
16._U_12_[PER]
GGCGCCTTAAGGCCTTCTCCTTCCAACC
17._GC-08-185-4-28
GGCGCCTTAAGGCCTTCTCCTTCCAACC
18._GC-08-184-4-27
GGCGCCTTAAGGCCTTCTCCTTCCAACC
19._U_12_[PER]
GGCGCCTTAAGGCCTTCTCCTTCCAACC
20._U_12_[PER]
GGCGCCTTAAGGCCTTCTCCTTCCAACC
21._U_12_[PER]
GTGGACCTAAGTCGCTCCCGATCTAGCT
22._GC-02-4-1-4
CCCGCCAA__CCGGAAAGCCTTGGAAGG
23._U_12_Fld#_179_Plt#_5
ACGGACAG__ACCGAGGGCGATAGAGAG
 29 30 31 32 33 34 35 36 37 38 39 40   
_Input profile
GGAACCTTTTTTCCCCTTCCGGCCX_XX_X
1._GC-08-185-4-28
GGAACCTTTTTTCCCCTTCCGGCCX_XX_X
2._GC-08-185-4-28
GGAACCTTTTTTCCCCTTCCGGCCX_XX_X
3._GC-08-185-4-28
GGAACCTTTTTTCCCCTTCCGGCCX_XX_X
4._GC-08-185-4-28
GGAACCTTTTTTCCCCTTCCGGCCX_XX_X
5._GC-08-184-4-27
GGAACCTTTTTTCCCCTTCCGGCCX_XX_X
6._GC-08-184-4-27
GGAACCTTTTTTCCCCTTCCGGCCX_XX_X
7._GC-08-184-4-27
GGAACCTTTTTTCCCCTTCCGGCCX_XX_X
8._GC-08-184-4-27
GGAACCTTTTTTCCCCTTCCGGCCX_XX_X
9._U_12_[PER]
GGAACCTTTTTTCCCCTTCCGGCCX_XX_X
10._U_12_[PER]
GGAACCTTTTTTCCCCTTCCGGCCX_XX_X
11._U_12_[PER]
GGAACCTTTTTTCCCCTTCCGGCCX_XX_X
12._U_12_[PER]
GGAACCTTTTTTCCCCTTCCGGCCX_XX_X
13._U_12_[PER]
GGAACCTTTTTTCCCCTTCCGGCCX_XX_X
14._U_12_[PER]
GGAACCTTTTTTCCCCTTCCGGCCX_XX_X
15._U_12_[PER]
GGAACCTTTTTTCCCCTTCCGGCCX_XX_X
16._U_12_[PER]
GG__CCTTTTTTCCCCTTCCGGCCX_XX_X
17._GC-08-185-4-28
GG__CCTTTTTTCCCCTTCCGGCCX_XX_X
18._GC-08-184-4-27
GGAACCTT__TTCCCCTTCCGGCCX_XX_X
19._U_12_[PER]
GGAACCTT__TTCCCCTTCCGGCCX_XX_X
20._U_12_[PER]
GG__CCTTTTTTCCCCTTCCGGCCX_XX_X
21._U_12_[PER]
GGATCCCTGTCTCCCTTTCGAGCCX_XX_X
22._GC-02-4-1-4
GGAA____AAAACCGGAAGGGGGGX_XX_X
23._U_12_Fld#_179_Plt#_5
GGAT____ACAGCCAGAACGAAGGX_XX_X

Input profile: U_12_[PER]

 
Mars Center for Cocoa Science, Brazil
Location: 8427 2
 Dapeng Zhang, 2016

1._U_12_[PER] GC-08-185-4-28

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

2._U_12_[PER] GC-08-185-4-28

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

3._U_12_[PER] GC-08-185-4-28

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

4._U_12_[PER] GC-08-185-4-28

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

5._U_12_[PER] GC-08-184-4-27

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

6._U_12_[PER] GC-08-184-4-27

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

7._U_12_[PER] GC-08-184-4-27

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

8._U_12_[PER] GC-08-184-4-27

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

9._U_12_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8428 5
 Dapeng Zhang, 2016

10._U_12_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8428 4
 Dapeng Zhang, 2016

11._U_12_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8428 3
 Dapeng Zhang, 2016

12._U_12_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8428 2
 Dapeng Zhang, 2016

13._U_12_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8427 7
 Dapeng Zhang, 2016

14._U_12_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8427 5
 Dapeng Zhang, 2016

15._U_12_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8427 1
 Dapeng Zhang, 2016

16._U_12_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8428 7
 Dapeng Zhang, 2016

17._U_12_[PER] GC-08-185-4-28

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

18._U_12_[PER] GC-08-184-4-27

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

19._U_12_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8427 4
 Dapeng Zhang, 2016

20._U_12_[PER]

identical
39 shared markers

Universidad Nacional Agraria de la Selva (UNAS), Peru
 Dapeng Zhang, 2016

21._U_12_[PER]

61.3 %
40 shared markers

 Dapeng Zhang, 2016

22._U_12_[PER] GC-02-4-1-4

48.6 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 2, Block: 1, Rep: 4, Tree: 1 > FP1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

23._U_12_[PER] U_12_Fld#_179_Plt#_5

31.4 %
35 shared markers

USDA-TARS, United States of America
Location: Field: 179, Tree: 5
Notes: TARS_Cacao_collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP25 2TcSNP32 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP193 7TcSNP226 8TcSNP230 9TcSNP242 10TcSNP372
11TcSNP429 12TcSNP469 13TcSNP529 14TcSNP534 15TcSNP560
16TcSNP577 17TcSNP591 18TcSNP619 19TcSNP645 20TcSNP723
21TcSNP872 22TcSNP891 23TcSNP917 24TcSNP929 25TcSNP953
26TcSNP994 27TcSNP998 28TcSNP1060 29TcSNP1062 30TcSNP1075
31TcSNP1144 32TcSNP1165 33TcSNP1253 34TcSNP1270 35TcSNP1350
36TcSNP1414 37TcSNP1442 38TcSNP1458 39TcSNP1484 40TcSNP1520