SNP Profiles of UCAYALI 12 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	GG	AA	AC	GG	TT	CC	CC	AA	CT	AA	AG	GG	AC	CC
1._U_12_[PER]	GG	AA	AC	GG	TT	CC	CC	AA	CT	AA	AG	GG	AC	CC
2._GC-08-185-4-28	GG	AA	AC	GG	TT	CC	CC	AA	CT	AA	AG	GG	AC	CC
3._GC-08-185-4-28	GG	AA	AC	GG	TT	CC	CC	AA	CT	AA	AG	GG	AC	CC
4._GC-08-185-4-28	GG	AA	AC	GG	TT	CC	CC	AA	CT	AA	AG	GG	AC	CC
5._GC-08-185-4-28	GG	AA	AC	GG	TT	CC	CC	AA	CT	AA	AG	GG	AC	CC
6._GC-08-185-4-28	GG	AA	AC	GG	TT	CC	CC	AA	CT	AA	AG	GG	AC	CC
7._GC-08-184-4-27	GG	AA	AC	GG	TT	CC	CC	AA	CT	AA	AG	GG	AC	CC
8._GC-08-184-4-27	GG	AA	AC	GG	TT	CC	CC	AA	CT	AA	AG	GG	AC	CC
9._GC-08-184-4-27	GG	AA	AC	GG	TT	CC	CC	AA	CT	AA	AG	GG	AC	CC
10._GC-08-184-4-27	GG	AA	AC	GG	TT	CC	CC	AA	CT	AA	AG	GG	AC	CC
11._U_12_[PER]	GG	AA	AC	GG	TT	CC	CC	AA	CT	AA	AG	GG	AC	CC
12._U_12_[PER]	GG	AA	AC	GG	TT	CC	CC	AA	CT	AA	AG	GG	AC	CC
13._U_12_[PER]	GG	AA	AC	GG	TT	CC	CC	AA	CT	AA	AG	GG	AC	CC
14._U_12_[PER]	GG	AA	AC	GG	TT	CC	CC	AA	CT	AA	AG	GG	AC	CC
15._U_12_[PER]	GG	AA	AC	GG	TT	CC	CC	AA	CT	AA	AG	GG	AC	CC
16._U_12_[PER]	GG	AA	AC	GG	TT	CC	CC	AA	CT	AA	AG	GG	AC	CC
17._U_12_[PER]	GG	AA	AC	GG	TT	CC	CC	AA	CT	AA	AG	GG	AC	CC
18._U_12_[PER]	GG	AA	AC	GG	TT	CC	CC	AA	CT	AA	AG	GG	AC	CC
19._GC-08-184-4-27	GG	AA	AC	GG	TT	CC	CC	AA	CT	AA	AG	GG	AC	CC
20._U_12_[PER]	GG	AA	AC	GG	TT	CC	CC	AA	CT	AA	AG	GG	AC	CC
21._U_12_[PER]	CG	AT	CC	GT	CT	CC	CC	AG	TT	AT	AA	AG	AC	CT
22._GC-02-4-1-4	GG	AA	AC	CC	AA	CC	GG	AA	AG	AA	AG	__	AC	__
23._U_12_Fld#_179_Plt#_5	CG	AT	CC	AC	AG	CC	GG	AG	AG	AT	AA	__	AC	__

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	GG	CG	CC	TT	AA	GG	CC	TT	CT	CC	TT	CC	AA	CC
1._U_12_[PER]	GG	CG	CC	TT	AA	GG	CC	TT	CT	CC	TT	CC	AA	CC
2._GC-08-185-4-28	GG	CG	CC	TT	AA	GG	CC	TT	CT	CC	TT	CC	AA	CC
3._GC-08-185-4-28	GG	CG	CC	TT	AA	GG	CC	TT	CT	CC	TT	CC	AA	CC
4._GC-08-185-4-28	GG	CG	CC	TT	AA	GG	CC	TT	CT	CC	TT	CC	AA	CC
5._GC-08-185-4-28	GG	CG	CC	TT	AA	GG	CC	TT	CT	CC	TT	CC	AA	CC
6._GC-08-185-4-28	GG	CG	CC	TT	AA	GG	CC	TT	CT	CC	TT	CC	AA	CC
7._GC-08-184-4-27	GG	CG	CC	TT	AA	GG	CC	TT	CT	CC	TT	CC	AA	CC
8._GC-08-184-4-27	GG	CG	CC	TT	AA	GG	CC	TT	CT	CC	TT	CC	AA	CC
9._GC-08-184-4-27	GG	CG	CC	TT	AA	GG	CC	TT	CT	CC	TT	CC	AA	CC
10._GC-08-184-4-27	GG	CG	CC	TT	AA	GG	CC	TT	CT	CC	TT	CC	AA	CC
11._U_12_[PER]	GG	CG	CC	TT	AA	GG	CC	TT	CT	CC	TT	CC	AA	CC
12._U_12_[PER]	GG	CG	CC	TT	AA	GG	CC	TT	CT	CC	TT	CC	AA	CC
13._U_12_[PER]	GG	CG	CC	TT	AA	GG	CC	TT	CT	CC	TT	CC	AA	CC
14._U_12_[PER]	GG	CG	CC	TT	AA	GG	CC	TT	CT	CC	TT	CC	AA	CC
15._U_12_[PER]	GG	CG	CC	TT	AA	GG	CC	TT	CT	CC	TT	CC	AA	CC
16._U_12_[PER]	GG	CG	CC	TT	AA	GG	CC	TT	CT	CC	TT	CC	AA	CC
17._U_12_[PER]	GG	CG	CC	TT	AA	GG	CC	TT	CT	CC	TT	CC	AA	CC
18._U_12_[PER]	GG	CG	CC	TT	AA	GG	CC	TT	CT	CC	TT	CC	AA	CC
19._GC-08-184-4-27	GG	CG	CC	TT	AA	GG	CC	TT	CT	CC	TT	CC	AA	CC
20._U_12_[PER]	GG	CG	CC	TT	AA	GG	CC	TT	CT	CC	TT	CC	AA	CC
21._U_12_[PER]	GT	GG	AC	CT	AA	GT	CG	CT	CC	CG	AT	CT	AG	CT
22._GC-02-4-1-4	CC	CG	CC	AA	__	CC	GG	AA	AG	CC	TT	GG	AA	GG
23._U_12_Fld#_179_Plt#_5	AC	GG	AC	AG	__	AC	CG	AG	GG	CG	AT	AG	AG	AG

	29	30	31	32	33	34	35	36	37	38	39
_Input profile	GG	CC	TT	TT	TT	CC	CC	TT	CC	GG	CC	X_X	X_X	X_X
1._U_12_[PER]	GG	CC	TT	TT	TT	CC	CC	TT	CC	GG	CC	X_X	X_X	X_X
2._GC-08-185-4-28	GG	CC	TT	TT	TT	CC	CC	TT	CC	GG	CC	X_X	X_X	X_X
3._GC-08-185-4-28	GG	CC	TT	TT	TT	CC	CC	TT	CC	GG	CC	X_X	X_X	X_X
4._GC-08-185-4-28	GG	CC	TT	TT	TT	CC	CC	TT	CC	GG	CC	X_X	X_X	X_X
5._GC-08-185-4-28	GG	CC	TT	TT	TT	CC	CC	TT	CC	GG	CC	X_X	X_X	X_X
6._GC-08-185-4-28	GG	CC	TT	TT	TT	CC	CC	TT	CC	GG	CC	X_X	X_X	X_X
7._GC-08-184-4-27	GG	CC	TT	TT	TT	CC	CC	TT	CC	GG	CC	X_X	X_X	X_X
8._GC-08-184-4-27	GG	CC	TT	TT	TT	CC	CC	TT	CC	GG	CC	X_X	X_X	X_X
9._GC-08-184-4-27	GG	CC	TT	TT	TT	CC	CC	TT	CC	GG	CC	X_X	X_X	X_X
10._GC-08-184-4-27	GG	CC	TT	TT	TT	CC	CC	TT	CC	GG	CC	X_X	X_X	X_X
11._U_12_[PER]	GG	CC	TT	TT	TT	CC	CC	TT	CC	GG	CC	X_X	X_X	X_X
12._U_12_[PER]	GG	CC	TT	TT	TT	CC	CC	TT	CC	GG	CC	X_X	X_X	X_X
13._U_12_[PER]	GG	CC	TT	TT	TT	CC	CC	TT	CC	GG	CC	X_X	X_X	X_X
14._U_12_[PER]	GG	CC	TT	TT	TT	CC	CC	TT	CC	GG	CC	X_X	X_X	X_X
15._U_12_[PER]	GG	CC	TT	TT	TT	CC	CC	TT	CC	GG	CC	X_X	X_X	X_X
16._U_12_[PER]	GG	CC	TT	TT	TT	CC	CC	TT	CC	GG	CC	X_X	X_X	X_X
17._U_12_[PER]	GG	CC	TT	TT	TT	CC	CC	TT	CC	GG	CC	X_X	X_X	X_X
18._U_12_[PER]	GG	CC	TT	TT	TT	CC	CC	TT	CC	GG	CC	X_X	X_X	X_X
19._GC-08-184-4-27	GG	CC	TT	__	TT	CC	CC	TT	CC	GG	CC	X_X	X_X	X_X
20._U_12_[PER]	GG	CC	TT	__	TT	CC	CC	TT	CC	GG	CC	X_X	X_X	X_X
21._U_12_[PER]	GG	CC	CT	GT	CT	CC	CT	TT	CG	AG	CC	X_X	X_X	X_X
22._GC-02-4-1-4	GG	__	__	AA	AA	CC	GG	AA	GG	GG	GG	X_X	X_X	X_X
23._U_12_Fld#_179_Plt#_5	GG	__	__	AC	AG	CC	AG	AA	CG	AA	GG	X_X	X_X	X_X

Input profile: U_12_[PER]

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8428 7

Dapeng Zhang, 2016

1._U_12_[PER]

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8428 5

Dapeng Zhang, 2016

2._U_12_[PER] GC-08-185-4-28

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

3._U_12_[PER] GC-08-185-4-28

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

4._U_12_[PER] GC-08-185-4-28

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

5._U_12_[PER] GC-08-185-4-28

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

6._U_12_[PER] GC-08-185-4-28

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

7._U_12_[PER] GC-08-184-4-27

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

8._U_12_[PER] GC-08-184-4-27

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

9._U_12_[PER] GC-08-184-4-27

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

10._U_12_[PER] GC-08-184-4-27

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

11._U_12_[PER]

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8428 4

Dapeng Zhang, 2016

12._U_12_[PER]

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8428 3

Dapeng Zhang, 2016

13._U_12_[PER]

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8428 2

Dapeng Zhang, 2016

14._U_12_[PER]

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8427 7

Dapeng Zhang, 2016

15._U_12_[PER]

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8427 5

Dapeng Zhang, 2016

16._U_12_[PER]

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8427 2

Dapeng Zhang, 2016

17._U_12_[PER]

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8427 1

Dapeng Zhang, 2016

18._U_12_[PER]

identical
39 shared markers

View View all Clone Any

Universidad Nacional Agraria de la Selva (UNAS), Peru

Dapeng Zhang, 2016

19._U_12_[PER] GC-08-184-4-27

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

20._U_12_[PER]

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8427 4

Dapeng Zhang, 2016

21._U_12_[PER]

61.5 %
39 shared markers

View View all Clone Any

PERICT

Dapeng Zhang, 2016

22._U_12_[PER] GC-02-4-1-4

47.1 %
34 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Field: 2, Block: 1, Rep: 4, Tree: 1 > FP1

Notes: MCCS_Structure_refs_above_0.9membership

23._U_12_[PER] U_12_Fld#_179_Plt#_5

30.9 %
34 shared markers

View View all Clone Any

USDA-TARS, United States of America

Location: Field: 179, Tree: 5

Notes: TARS_Cacao_collection

Key to SNP Markers

Key to SNP Markers

1	TcSNP25	2	TcSNP32	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP193	7	TcSNP226	8	TcSNP230	9	TcSNP242	10	TcSNP372
11	TcSNP429	12	TcSNP469	13	TcSNP529	14	TcSNP534	15	TcSNP560
16	TcSNP577	17	TcSNP591	18	TcSNP619	19	TcSNP645	20	TcSNP723
21	TcSNP872	22	TcSNP891	23	TcSNP917	24	TcSNP929	25	TcSNP953
26	TcSNP994	27	TcSNP998	28	TcSNP1060	29	TcSNP1062	30	TcSNP1144
31	TcSNP1165	32	TcSNP1253	33	TcSNP1270	34	TcSNP1350	35	TcSNP1414
36	TcSNP1442	37	TcSNP1458	38	TcSNP1484	39	TcSNP1520