SNP Profiles of ICS 40   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
GGATACGTCTACCGAGCTATGGAGCCCT
1._UF_12___
GGATACGTCTACCGAGCTATGGAGCCCT
2._UF_12___
GGATACGTCTACCGAGCTATGGAGCCCT
3._UF_12___
GGATACGTCTACCGAGCTATGGAGCCCT
4._UF_12___
GGATACGTCTACCGAGCTATGGAGCCCT
5._UF_12___
GGATACGTCTACCGAGCTATGGAGCCCT
6._UF_12___
GGATACGTCTACCGAGCTATGGAGCCCT
7._UF_12___
GGATACGTCTACCGAGCTATGGAGCCCT
8._UF_12___
GGATACGTCTACCGAGCTATGGAGCCCT
9._UF_12___
GGATACGTCTACCGAGCTATGGAGCCCT
10._UF_12___
GGATACGTCTACCGAGCTATGGAGCCCT
11._UF_12___
GGATACGTCTCCGGGGCCAAGGAGACCT
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
GTCCACCTAGGTCGCCTTGGAACTAGCT
1._UF_12___
GTCCACCTAGGTCGCCTTGGAACTAGCT
2._UF_12___
GTCCACCTGGGTCGCCTTGGAACTAGCT
3._UF_12___
GTCCACCTGGGTCGCCTTGGAACTAGCT
4._UF_12___
GTCCACCTGGGTCGCCTTGGAACTAGCT
5._UF_12___
GTCCACCTGGGTCGCCTTGGAACTAGCT
6._UF_12___
GTCCACCTGGGTCGCCTTGGAACTAGCT
7._UF_12___
GTCCACCTGGGTCGCCTTGGAACTAGCT
8._UF_12___
GTCCACCTGGGTCGCCTTGGAACTAGCT
9._UF_12___
GTCCACCTGGGTCGCCTTGGAACTAGCT
10._UF_12___
GTCCACCTGGGTCGCCTTGGAACTAGCT
11._UF_12___
GGGGACCTAAGTCGCTCTCGAATTAACC
 29 30 31 32 33 34 35 36 37 38 39 40   
_Input profile
AAAATTCTGTCCAATTCTGGAGCTX_XX_X
1._UF_12___
AAAACTCTGTCCAATTCTGGAGCTX_XX_X
2._UF_12___
AAAACTCTGTCCAATTCTCGAGCTX_XX_X
3._UF_12___
AAAACTCTGTCCAATTCTCGAGCTX_XX_X
4._UF_12___
AAAACTCTGTCCAATTCTCGAGCTX_XX_X
5._UF_12___
AAAACTCTGTCCAATTCTCGAGCTX_XX_X
6._UF_12___
AAAACTCTGTCCAATTCTCGAGCTX_XX_X
7._UF_12___
AAAACTCTGTCCAATTCTCGAGCTX_XX_X
8._UF_12___
AAAACTCTGTCCAATTCTCGAGCTX_XX_X
9._UF_12___
AAAACTCTGTCCAATTCTCGAGCTX_XX_X
10._UF_12___
AAAACTCTGTCCAATTCTCGAGCTX_XX_X
11._UF_12___
GGAACCCTGGTTAACTTTCCAGCCX_XX_X

Input profile: UF_12

 
Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

1._UF_12

98.8 %
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F444 T5
 Dapeng Zhang, 2016

2._UF_12

96.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5221 1 > FP
 Dapeng Zhang, 2016

3._UF_12

96.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5221 2 > FP
 Dapeng Zhang, 2016

4._UF_12

96.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5221 3 > FP
 Dapeng Zhang, 2016

5._UF_12

96.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5221 4 > FP
 Dapeng Zhang, 2016

6._UF_12 GC-05-070-2-21

96.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

7._UF_12 GC-05-070-2-21

96.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

8._UF_12 GC-05-070-2-21

96.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

9._UF_12 GC-05-070-2-21

96.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP4
 Mars, 2018

10._UF_12 GC-05-070-2-21

96.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

11._UF_12

65 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5221 5
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP25 2TcSNP32 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP193 7TcSNP226 8TcSNP230 9TcSNP242 10TcSNP372
11TcSNP429 12TcSNP469 13TcSNP529 14TcSNP534 15TcSNP560
16TcSNP577 17TcSNP591 18TcSNP619 19TcSNP645 20TcSNP723
21TcSNP872 22TcSNP891 23TcSNP917 24TcSNP929 25TcSNP953
26TcSNP994 27TcSNP998 28TcSNP1060 29TcSNP1062 30TcSNP1075
31TcSNP1144 32TcSNP1165 33TcSNP1253 34TcSNP1270 35TcSNP1350
36TcSNP1414 37TcSNP1442 38TcSNP1458 39TcSNP1484 40TcSNP1520