SNP Profiles of UF 613   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CGATCCTTCTACCCAGCCATAGAAACCT
1._UF_613___
CGATCCTTCTACCCAGCCATAGAAACCT
2._UF_613___
CGATCCTTCTACCCAGCCATAGAAACCT
3._UF_613___
CGATCCTTCTACCCAGCCATAGAAACCT
4._UF_613___
CGATCCTTCTACCCAGCCATAGAAACCT
5._UF_613___
CGATCCTTCTACCCAGCCATAGAAACCT
6._UF_613___
CGATCCTTCTACCCAGCCATAGAAACCT
7._UF_613___
CGATCCTTCTACCCAGCCATAGAAACCT
8._UF_613___
CGATCCTTCTACCCAGCCATAGAAACCT
9._UF_613___
CGATCCTTCTACCCAGCCATAGAAACCT
10._UF_613___
CGATCCTTCTACCCAGCCATAGAAACCT
11._UF_613___
CGATCCTTCTACCCAGCCATAGAAACCT
12._UF_613___
CGATCCTTCTACCCAGCCATAGAAACCT
13._UF_613___
CGATCCTTCTACCCAGCCATAGAAACCT
14._UF_613___
CGATCCTTCTACCCAGCCATAGAAACCT
15._UF_613___
CGATCCTTCTACCCAGCCATAGAAACCT
16._UF_613___
CGATCCTTCTACCCAGCCATAGAAACCT
17._UF_613___
CGATCCTTCTACCCAGCCATAGAAACCT
18._UF_613___
CGATCCTTCTACCCAGCCATAGAAACCT
19._UF_613___
CGATCCTTCTACCCAGCCATAGAAACCT
20._UF_613___
CGATCCTTCTACCCAGCCATAGAAACCT
21._UF_613___
CGATCCTTCTACCCAGCCATAGAAACCT
22._UF_613___
CGATCCTTCTACCCAGCCATAGAAACCT
23._UF_613___
CGATCCTTCTACCCAGCCATAGAAACCT
24._UF_613___
CGATCCTTCTACCCAGCCATAGAAACCT
25._UF_613___
____CCTTCTACCCAGCCAT__AAACCT
26._UF_613___
____CC________AG________AC__
27._UF_613___
CGATCCTTCTACCCAGCCATAGAAACCT
28._UF_613___
CGATCCTTCTACCCAGCCATAGAAACCT
29._UF_613___
CGATCCTTCTAC__AGCCATAGAAACCT
30._UF_613___
____CC__CTACGGAG__AT________
31._UF_613___
CGATAAGTTTCCCCAG__AAGGAGACCT
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
GTCCACCTTTGGCTTTGGATTTAGCTAG
1._UF_613___
GTCCACCTTTGGCTTTGGATTTAGCTAG
2._UF_613___
GTCCACCTTTGGCTTTGGATTTAGCTAG
3._UF_613___
GTCCACCTTTGGCTTTGGATTTAGCTAG
4._UF_613___
GTCCACCTTTGGCTTTGGATTTAGCTAG
5._UF_613___
GTCCACCTTTGGCTTTGGATTTAGCTAG
6._UF_613___
GTCCACCTTTGGCTTTGGATTTAGCTAG
7._UF_613___
GTCCACCTTTGGCTTTGGATTTAGCTAG
8._UF_613___
GTCCACCTTTGGCTTTGGATTTAGCTAG
9._UF_613___
GTCCACCTTTGGCTTTGGATTTAGCTAG
10._UF_613___
GTCCACCTTTGGCTTTGGATTTAGCTAG
11._UF_613___
GTCCACCTTTGGCTTTGGATTTAGCTAG
12._UF_613___
GTCCACCTTTGGCTTTGGATTTAGCTAG
13._UF_613___
GTCCACCTTTGGCTTTGGATTTAGCTAG
14._UF_613___
GTCCACCTTTGGCTTTGGATTTAGCTAG
15._UF_613___
GTCCACCTTTGGCTTTGGATTTAGCTAG
16._UF_613___
GTCCACCTTTGGCTTTGGATTTAGCTAG
17._UF_613___
GTCCACCTTTGGCTTTGGATTTAGCTAG
18._UF_613___
GTCCACCTTTGGCTTTGGATTTAGCTAG
19._UF_613___
GTCCACCTTTGGCTTTGGATTTAGCTAG
20._UF_613___
GTCCACCTTTGGCTTTGGATTTAGCTAG
21._UF_613___
GTCCACCTTTGGCTTTGGATTTAGCTAG
22._UF_613___
GTCCACCTTTGGCTTTGGATTTAGCTAG
23._UF_613___
GTCCACCTTTGGCTTTGGATTTAGCTAG
24._UF_613___
GTCCACCTTTGGCTTTGGATTTAGCTAG
25._UF_613___
GTCCACCTTTGGCT________AGCT__
26._UF_613___
__CCAC__TTGG__________AG__AG
27._UF_613___
GTCCACCTTTGGCTTTGGATTTAGCTAG
28._UF_613___
GTCCACCTTTGGCTTTGGATTTAGCTAG
29._UF_613___
GTCCACCTTTGGCTTTGGATTTAGCTAG
30._UF_613___
__CCAC____CCCT______TT__CT__
31._UF_613___
GTCGACTTGGCGCTCTCGATCTAGTTAG
 29 30 31 32 33 34 35 36 37 38 39    
_Input profile
ATCTCTGTCCAACTCTGGAGCTX_XX_XX_X
1._UF_613___
ATCTCTGTCCAACTCTGGAGCTX_XX_XX_X
2._UF_613___
ATCTCTGTCCAACTCTGGAGCTX_XX_XX_X
3._UF_613___
ATCTCTGTCCAACTCTGGAGCTX_XX_XX_X
4._UF_613___
ATCTCTGTCCAACTCTGGAGCTX_XX_XX_X
5._UF_613___
ATCTCTGTCCAACTCTGGAGCTX_XX_XX_X
6._UF_613___
ATCTCTGTCCAACTCTGGAGCTX_XX_XX_X
7._UF_613___
ATCTCTGTCCAACTCTGGAGCTX_XX_XX_X
8._UF_613___
ATCTCTGTCCAACTCTGGAGCTX_XX_XX_X
9._UF_613___
ATCTCTGTCCAACTCTGGAGCTX_XX_XX_X
10._UF_613___
ATCTCTGTCCAACTCTGGAGCTX_XX_XX_X
11._UF_613___
ATCTCTGTCCAACTCTGGAGCTX_XX_XX_X
12._UF_613___
ATCTCTGTCCAACTCTGGAGCTX_XX_XX_X
13._UF_613___
ATCTCTGTCCAACTCTGGAGCTX_XX_XX_X
14._UF_613___
ATCTCTGTCCAACTCTGGAGCTX_XX_XX_X
15._UF_613___
ATCTCTGTCCAACTCTGGAGCTX_XX_XX_X
16._UF_613___
ATCTCTGTCCAACTCTGGAGCTX_XX_XX_X
17._UF_613___
ATCTCTGTCCAACTCTGGAGCTX_XX_XX_X
18._UF_613___
ATCTCTGTCCAACTCTGGAGCTX_XX_XX_X
19._UF_613___
ATCTCTGTCCAACTCTGGAGCTX_XX_XX_X
20._UF_613___
ATCTCTGTCCAACTCTGGAGCTX_XX_XX_X
21._UF_613___
ATCTCTGTCCAACTCTGGAGCTX_XX_XX_X
22._UF_613___
ATCTCTGTCCAACTCTGGAGCTX_XX_XX_X
23._UF_613___
ATCTCTGTCCAA__CTGGAGCTX_XX_XX_X
24._UF_613___
ATCTCTGTCCAA__CTGGAGCTX_XX_XX_X
25._UF_613___
______GT______CTGGAG__X_XX_XX_X
26._UF_613___
__CT__GT________GG____X_XX_XX_X
27._UF_613___
ATCTCTGTCCACCTCTGGAGCTX_XX_XX_X
28._UF_613___
ATCTCTGTCCACCTCTGGAGCTX_XX_XX_X
29._UF_613___
AT__CTGTCCACCTCTGGAGTTX_XX_XX_X
30._UF_613___
________________CC____X_XX_XX_X
31._UF_613___
AACTTTGTCCACCTCCCGAGCTX_XX_XX_X

Input profile: UF_613

 
Mars Center for Cocoa Science, Brazil
Location: 8157 7
 Dapeng Zhang, 2016

1._UF_613

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8157 10
 Dapeng Zhang, 2016

2._UF_613 GC-08-046-1-57

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

3._UF_613 GC-08-046-1-57

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

4._UF_613 GC-08-046-1-57

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

5._UF_613 GC-08-046-1-57

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

6._UF_613 GC-05-057-2-08

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP3
 Mars, 2018

7._UF_613 GC-05-057-2-08

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

8._UF_613 GC-05-057-2-08

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

9._UF_613 GC-05-057-2-08

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

10._UF_613 GC-05-057-2-08

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

11._UF_613

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8157 4 > FP
 Dapeng Zhang, 2016

12._UF_613

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8157 3 > FP
 Dapeng Zhang, 2016

13._UF_613

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8157 1 > FP
 Dapeng Zhang, 2016

14._UF_613

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8157 6
 Dapeng Zhang, 2016

15._UF_613

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5208 5 > FP
 Dapeng Zhang, 2016

16._UF_613

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5208 4 > FP
 Dapeng Zhang, 2016

17._UF_613

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5208 1 > FP
 Dapeng Zhang, 2016

18._UF_613

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5208 3
 Dapeng Zhang, 2016

19._UF_613

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5208 2
 Dapeng Zhang, 2016

20._UF_613 GC-08-046-1-57

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

21._UF_613 GC-08-046-1-57

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

22._UF_613 GC-08-046-1-57

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

23._UF_613

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8157 7
 Dapeng Zhang, 2016

24._UF_613 GC-08-046-1-57

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

25._UF_613 RUQ_1573

identical
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

26._UF_613 RUQ_1573

identical
12 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

27._UF_613

98.7 %
39 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

28._UF_613 RUQ_1573

98.7 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

29._UF_613

97.3 %
37 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A A93 T2
 Dapeng Zhang, 2016

30._UF_613 RUQ_1573

76.9 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

31._UF_613

71.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8157 5
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP25 2TcSNP32 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP193 7TcSNP226 8TcSNP230 9TcSNP242 10TcSNP372
11TcSNP429 12TcSNP469 13TcSNP529 14TcSNP534 15TcSNP560
16TcSNP577 17TcSNP591 18TcSNP619 19TcSNP723 20TcSNP872
21TcSNP891 22TcSNP917 23TcSNP929 24TcSNP953 25TcSNP994
26TcSNP998 27TcSNP1060 28TcSNP1062 29TcSNP1075 30TcSNP1144
31TcSNP1165 32TcSNP1253 33TcSNP1270 34TcSNP1350 35TcSNP1414
36TcSNP1442 37TcSNP1458 38TcSNP1484 39TcSNP1520