SNP Profiles of UF 613   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CGATAAGTTTCCCCAGAAGGAGACCTGT
1._UF_613___
CGATCCTTCTACCCAGATAGAAACCTGT
2._UF_613___
CGATCCTTCTACCCAGATAGAAACCTGT
3._UF_613___
CGATCCTTCTACCCAGATAGAAACCTGT
4._UF_613___
CGATCCTTCTACCCAGATAGAAACCTGT
5._UF_613___
CGATCCTTCTACCCAGATAGAAACCTGT
6._UF_613___
CGATCCTTCTACCCAGATAGAAACCTGT
7._UF_613___
CGATCCTTCTACCCAGATAGAAACCTGT
8._UF_613___
CGATCCTTCTACCCAGATAGAAACCTGT
9._UF_613___
CGATCCTTCTACCCAGATAGAAACCTGT
10._UF_613___
CGATCCTTCTACCCAGATAGAAACCTGT
11._UF_613___
CGATCCTTCTACCCAGATAGAAACCTGT
12._UF_613___
CGATCCTTCTACCCAGATAGAAACCTGT
13._UF_613___
CGATCCTTCTACCCAGATAGAAACCTGT
14._UF_613___
CGATCCTTCTACCCAGATAGAAACCTGT
15._UF_613___
CGATCCTTCTACCCAGATAGAAACCTGT
16._UF_613___
CGATCCTTCTACCCAGATAGAAACCTGT
17._UF_613___
CGATCCTTCTACCCAGATAGAAACCTGT
18._UF_613___
CGATCCTTCTACCCAGATAGAAACCTGT
19._UF_613___
CGATCCTTCTACCCAGATAGAAACCTGT
20._UF_613___
CGATCCTTCTACCCAGATAGAAACCTGT
21._UF_613___
CGATCCTTCTACCCAGATAGAAACCTGT
22._UF_613___
CGATCCTTCTACCCAGATAGAAACCTGT
23._UF_613___
CGATCCTTCTACCCAGATAGAAACCTGT
24._UF_613___
CGATCCTTCTACCCAGATAGAAACCTGT
25._UF_613___
CGATCCTTCTACCCAGATAGAAACCTGT
26._UF_613___
CGATCCTTCTACCCAGATAGAAACCTGT
27._UF_613___
CGATCCTTCTACCCAGATAGAAACCTGT
28._UF_613___
____CC________AG______AC____
29._UF_613___
CGATCCTTCTAC__AGATAGAAACCTGT
30._UF_613___
____CCTTCTACCCAGAT__AAACCTGT
31._UF_613___
____CC__CTACGGAGAT__________
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
CGACTTAGGGCGCTCTCGATCTAGTTAG
1._UF_613___
CCACCTAATTGGCTTTGGATTTAGCTAG
2._UF_613___
CCACCTAATTGGCTTTGGATTTAGCTAG
3._UF_613___
CCACCT__TTGGCTTTGGATTTAGCTAG
4._UF_613___
CCACCT__TTGGCTTTGGATTTAGCTAG
5._UF_613___
CCACCT__TTGGCTTTGGATTTAGCTAG
6._UF_613___
CCACCT__TTGGCTTTGGATTTAGCTAG
7._UF_613___
CCACCT__TTGGCTTTGGATTTAGCTAG
8._UF_613___
CCACCT__TTGGCTTTGGATTTAGCTAG
9._UF_613___
CCACCT__TTGGCTTTGGATTTAGCTAG
10._UF_613___
CCACCT__TTGGCTTTGGATTTAGCTAG
11._UF_613___
CCACCT__TTGGCTTTGGATTTAGCTAG
12._UF_613___
CCACCT__TTGGCTTTGGATTTAGCTAG
13._UF_613___
CCACCT__TTGGCTTTGGATTTAGCTAG
14._UF_613___
CCACCT__TTGGCTTTGGATTTAGCTAG
15._UF_613___
CCACCT__TTGGCTTTGGATTTAGCTAG
16._UF_613___
CCACCT__TTGGCTTTGGATTTAGCTAG
17._UF_613___
CCACCT__TTGGCTTTGGATTTAGCTAG
18._UF_613___
CCACCT__TTGGCTTTGGATTTAGCTAG
19._UF_613___
CCACCT__TTGGCTTTGGATTTAGCTAG
20._UF_613___
CCACCT__TTGGCTTTGGATTTAGCTAG
21._UF_613___
CCACCT__TTGGCTTTGGATTTAGCTAG
22._UF_613___
CCACCT__TTGGCTTTGGATTTAGCTAG
23._UF_613___
CCACCT__TTGGCTTTGGATTTAGCTAG
24._UF_613___
CCACCT__TTGGCTTTGGATTTAGCTAG
25._UF_613___
CCACCT__TTGGCTTTGGATTTAGCTAG
26._UF_613___
CCACCT__TTGGCTTTGGATTTAGCTAG
27._UF_613___
CCACCT__TTGGCTTTGGATTTAGCTAG
28._UF_613___
CCAC__AATTGG__________AG__AG
29._UF_613___
CCACCTAATTGGCTTTGGATTTAGCTAG
30._UF_613___
CCACCT__TTGGCT________AGCT__
31._UF_613___
CCAC______CCCT______TT__CT__
 29 30 31 32 33 34 35 36 37 38 39    
_Input profile
AACTTTGTCCACCTCCCGAGCTX_XX_XX_X
1._UF_613___
ATCTCTGTCCACCTCTGGAGCTX_XX_XX_X
2._UF_613___
ATCTCTGTCCACCTCTGGAGCTX_XX_XX_X
3._UF_613___
ATCTCTGTCCAACTCTGGAGCTX_XX_XX_X
4._UF_613___
ATCTCTGTCCAACTCTGGAGCTX_XX_XX_X
5._UF_613___
ATCTCTGTCCAACTCTGGAGCTX_XX_XX_X
6._UF_613___
ATCTCTGTCCAACTCTGGAGCTX_XX_XX_X
7._UF_613___
ATCTCTGTCCAACTCTGGAGCTX_XX_XX_X
8._UF_613___
ATCTCTGTCCAACTCTGGAGCTX_XX_XX_X
9._UF_613___
ATCTCTGTCCAACTCTGGAGCTX_XX_XX_X
10._UF_613___
ATCTCTGTCCAACTCTGGAGCTX_XX_XX_X
11._UF_613___
ATCTCTGTCCAACTCTGGAGCTX_XX_XX_X
12._UF_613___
ATCTCTGTCCAACTCTGGAGCTX_XX_XX_X
13._UF_613___
ATCTCTGTCCAACTCTGGAGCTX_XX_XX_X
14._UF_613___
ATCTCTGTCCAACTCTGGAGCTX_XX_XX_X
15._UF_613___
ATCTCTGTCCAACTCTGGAGCTX_XX_XX_X
16._UF_613___
ATCTCTGTCCAACTCTGGAGCTX_XX_XX_X
17._UF_613___
ATCTCTGTCCAACTCTGGAGCTX_XX_XX_X
18._UF_613___
ATCTCTGTCCAACTCTGGAGCTX_XX_XX_X
19._UF_613___
ATCTCTGTCCAACTCTGGAGCTX_XX_XX_X
20._UF_613___
ATCTCTGTCCAACTCTGGAGCTX_XX_XX_X
21._UF_613___
ATCTCTGTCCAACTCTGGAGCTX_XX_XX_X
22._UF_613___
ATCTCTGTCCAACTCTGGAGCTX_XX_XX_X
23._UF_613___
ATCTCTGTCCAACTCTGGAGCTX_XX_XX_X
24._UF_613___
ATCTCTGTCCAACTCTGGAGCTX_XX_XX_X
25._UF_613___
ATCTCTGTCCAACTCTGGAGCTX_XX_XX_X
26._UF_613___
ATCTCTGTCCAA__CTGGAGCTX_XX_XX_X
27._UF_613___
ATCTCTGTCCAA__CTGGAGCTX_XX_XX_X
28._UF_613___
__CT__GT________GG____X_XX_XX_X
29._UF_613___
AT__CTGTCCACCTCTGGAGTTX_XX_XX_X
30._UF_613___
______GT______CTGGAG__X_XX_XX_X
31._UF_613___
________________CC____X_XX_XX_X

Input profile: UF_613

 
Mars Center for Cocoa Science, Brazil
Location: 8157 5
 Dapeng Zhang, 2016

1._UF_613

71.8 %
39 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

2._UF_613 RUQ_1573

71.8 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

3._UF_613

71.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8157 7
 Dapeng Zhang, 2016

4._UF_613 GC-08-046-1-57

71.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

5._UF_613 GC-08-046-1-57

71.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

6._UF_613 GC-08-046-1-57

71.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

7._UF_613 GC-08-046-1-57

71.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

8._UF_613 GC-05-057-2-08

71.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP3
 Mars, 2018

9._UF_613 GC-05-057-2-08

71.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

10._UF_613 GC-05-057-2-08

71.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

11._UF_613 GC-05-057-2-08

71.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

12._UF_613 GC-05-057-2-08

71.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

13._UF_613

71.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8157 4 > FP
 Dapeng Zhang, 2016

14._UF_613

71.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8157 3 > FP
 Dapeng Zhang, 2016

15._UF_613

71.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8157 1 > FP
 Dapeng Zhang, 2016

16._UF_613

71.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8157 10
 Dapeng Zhang, 2016

17._UF_613

71.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8157 6
 Dapeng Zhang, 2016

18._UF_613

71.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5208 5 > FP
 Dapeng Zhang, 2016

19._UF_613

71.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5208 4 > FP
 Dapeng Zhang, 2016

20._UF_613

71.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5208 1 > FP
 Dapeng Zhang, 2016

21._UF_613

71.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5208 3
 Dapeng Zhang, 2016

22._UF_613

71.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5208 2
 Dapeng Zhang, 2016

23._UF_613 GC-08-046-1-57

71.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

24._UF_613 GC-08-046-1-57

71.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

25._UF_613 GC-08-046-1-57

71.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

26._UF_613

70.3 %
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8157 7
 Dapeng Zhang, 2016

27._UF_613 GC-08-046-1-57

70.3 %
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

28._UF_613 RUQ_1573

69.2 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

29._UF_613

68.9 %
37 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A A93 T2
 Dapeng Zhang, 2016

30._UF_613 RUQ_1573

67.4 %
23 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

31._UF_613 RUQ_1573

53.8 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

 


  Key to SNP Markers

1TcSNP25 2TcSNP32 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP193 7TcSNP226 8TcSNP230 9TcSNP372 10TcSNP429
11TcSNP469 12TcSNP529 13TcSNP534 14TcSNP560 15TcSNP577
16TcSNP591 17TcSNP619 18TcSNP645 19TcSNP723 20TcSNP872
21TcSNP891 22TcSNP917 23TcSNP929 24TcSNP953 25TcSNP994
26TcSNP998 27TcSNP1060 28TcSNP1062 29TcSNP1075 30TcSNP1144
31TcSNP1165 32TcSNP1253 33TcSNP1270 34TcSNP1350 35TcSNP1414
36TcSNP1442 37TcSNP1458 38TcSNP1484 39TcSNP1520