SNP Profiles of UF 667   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
GGATACGTCTACCGAGCTATGGAGCCCT
1._UF_667
GGATACGTCTACCGAGCTATGGAGCCCT
2._GC-01-029-2-06
GGATACGTCTACCGAGCTATGGAGCCCT
3._GC-01-029-2-06
GGATACGTCTACCGAGCTATGGAGCCCT
4._UF_667
GGATACGTCTACCGAGCTATGGAGCCCT
5._UF_667
GGATACGTCTACCGAGCTATGGAGCCCT
6._UF_667
GGATACGTCTACCGAGCTATGGAGCCCT
7._UF_667
GGATACGTCTACCGAGCTATGGAGCCCT
8._GC-01-029-2-06
GGATACGTCTACCGAGCTATGGAGCCCT
9._GC-01-029-2-06
GGATACGTCTACCGAGCTATGGAGCCCT
10._GC-01-029-2-06
GGATACGTCTACCGAGCTATGGAGCCCT
11._GC-01-029-2-06
GGATACGTCTACCGAGCTATGGAGCCCT
12._UF_667
GGATACGTCTAC__AGCTATGGAGCCCT
13._GC-01-029-2-06
GGATACGTCTAC__AGCTATGGAGCCCT
14._UF_667
GGATACGTCTACCGAGCTATGGAGCCCT
15._RUQ_55
GGATACGTCTACCGAGCTATGGAGCCCT
16._UF_667
GGATACGTCTACCGAGCTATGGAGCCCT
17._RUQ_55
____ACGTCTACCGAGCTAT__AGCCCT
18._UF_667
GGATACGTCTACGGAGCTATGGAGCCCT
19._RUQ_55
____AC________AG________AC__
20._UF_667
GGATACGTCTAACCAGCCAAGGAGAACC
21._GC-01-29-2-6
GGATACACAGACCGAGAGATGG__CC__
22._RUQ_55
GGATACACAGACCGAGAGATGG__CC__
23._UF_667_Fld#_119_Plt#_1
GGATCCACAAAAGGAAAGATGG__AC__
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
GTCCACCTGGGTCGCCTTGGAACTAGAA
1._UF_667
GTCCACCTGGGTCGCCTTGGAACTAGAA
2._GC-01-029-2-06
GTCCACCTGGGTCGCCTTGGAACTAGAA
3._GC-01-029-2-06
GTCCACCTGGGTCGCCTTGGAACTAGAA
4._UF_667
GTCCACCTGGGTCGCCTTGGAACTAGAA
5._UF_667
GTCCACCTGGGTCGCCTTGGAACTAGAA
6._UF_667
GTCCACCTGGGTCGCCTTGGAACTAGAA
7._UF_667
GTCCACCTGGGTCGCCTTGGAACTAGAA
8._GC-01-029-2-06
GTCCACCTGGGTCGCCTTGGAACTAGAA
9._GC-01-029-2-06
GTCCACCTGGGTCGCCTTGGAACTAGAA
10._GC-01-029-2-06
GTCCACCTGGGTCGCCTTGGAACTAGAA
11._GC-01-029-2-06
GTCCACCTGGGTCGCCTTGGAACTAGAA
12._UF_667
GTCCACCTGGGTCGCCTTGGAACTAGAA
13._GC-01-029-2-06
GTCCACCTGGGTCGCCTTGGAACTAGAA
14._UF_667
GTCCACCTAGGTCGCCTTGGAACTAGAA
15._RUQ_55
GTCCACCTAGGTCGCCTTGGAACTAGAA
16._UF_667
GTCCACCTAGGTCGCCTTGGAACTAGAA
17._RUQ_55
GTCCAACT__GTCGCC________AG__
18._UF_667
GTCCACCTAGGTCGCCTTGGAACTAGAA
19._RUQ_55
__CCAC__AGGTCG__________AGAA
20._UF_667
GGCGCCTTAAGGGGCCCTCGAACCAGGG
21._GC-01-29-2-6
ACCCACAG__ACCGGGAAGGAAAGAGAA
22._RUQ_55
ACCCACAG__ACCGGGAAGGAAAGAGAA
23._UF_667_Fld#_119_Plt#_1
ACCGACAA__CCGGAGAGGGATAAAAAG
 29 30 31 32 33 34 35 36 37 38 39    
_Input profile
AACTCTGTCCAATTCTCGAGCTX_XX_XX_X
1._UF_667
AACTCTGTCCAATTCTCGAGCTX_XX_XX_X
2._GC-01-029-2-06
AACTCTGTCCAATTCTCGAGCTX_XX_XX_X
3._GC-01-029-2-06
AACTCTGTCCAATTCTCGAGCTX_XX_XX_X
4._UF_667
AACTCTGTCCAATTCTCGAGCTX_XX_XX_X
5._UF_667
AACTCTGTCCAATTCTCGAGCTX_XX_XX_X
6._UF_667
AACTCTGTCCAATTCTCGAGCTX_XX_XX_X
7._UF_667
AACTCTGTCCAATTCTCGAGCTX_XX_XX_X
8._GC-01-029-2-06
AACTCTGTCCAATTCTCGAGCTX_XX_XX_X
9._GC-01-029-2-06
AACTCTGTCCAATTCTCGAGCTX_XX_XX_X
10._GC-01-029-2-06
AACTCTGTCCAATTCTCGAGCTX_XX_XX_X
11._GC-01-029-2-06
AACTCTGTCCAATTCTCGAGCTX_XX_XX_X
12._UF_667
AACTCTGTCCAATTCTCGAGCTX_XX_XX_X
13._GC-01-029-2-06
AACTCTGTCCAATTCTCGAGCTX_XX_XX_X
14._UF_667
AACTCTGTCCAATTCTCGAGCTX_XX_XX_X
15._RUQ_55
AACTCTGTCCAATTCTCGAGCTX_XX_XX_X
16._UF_667
AACTCTGTCCAATTCTCGAGCTX_XX_XX_X
17._RUQ_55
______GT______CTCGAG__X_XX_XX_X
18._UF_667
AACTCTGTCCAATTCTCGAGCTX_XX_XX_X
19._RUQ_55
__CT__GT________CG____X_XX_XX_X
20._UF_667
AACCCCTTTTCCTTCTCGGGCCX_XX_XX_X
21._GC-01-29-2-6
AA____AAGGAAAAAGCGAGAGX_XX_XX_X
22._RUQ_55
AA____AAGGAAAAAGCGAGAGX_XX_XX_X
23._UF_667_Fld#_119_Plt#_1
AA____AAAGACAGAGCCAGGGX_XX_XX_X

Input profile: UF_667

 
Mars Center for Cocoa Science, Brazil
Location: 1206 7
 Dapeng Zhang, 2016

1._UF_667

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1206 2
 Dapeng Zhang, 2016

2._UF_667 GC-01-029-2-06

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

3._UF_667 GC-01-029-2-06

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

4._UF_667

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1206 5 > FP
 Dapeng Zhang, 2016

5._UF_667

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1206 1 > FP
 Dapeng Zhang, 2016

6._UF_667

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1206 10
 Dapeng Zhang, 2016

7._UF_667

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1206 3
 Dapeng Zhang, 2016

8._UF_667 GC-01-029-2-06

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

9._UF_667 GC-01-029-2-06

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP2
 Mars, 2018

10._UF_667 GC-01-029-2-06

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

11._UF_667 GC-01-029-2-06

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

12._UF_667

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1206 11 > F
 Dapeng Zhang, 2016

13._UF_667 GC-01-029-2-06

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11 > FP4
 Mars, 2018

14._UF_667

98.7 %
39 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

15._UF_667 RUQ_55

98.7 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

16._UF_667

98.7 %
39 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: C0244
 Dapeng Zhang, 2016

17._UF_667 RUQ_55

97.8 %
23 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

18._UF_667

97.4 %
39 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F466 T2
 Dapeng Zhang, 2016

19._UF_667 RUQ_55

92.3 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

20._UF_667

62.8 %
39 shared markers

Indonesian Coffee and Cocoa Research Institute (ICCRI), Indonesia
Location: KW 292 I-042
 Dapeng Zhang, 2016

21._UF_667 GC-01-29-2-6

58.8 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 6, Tree: 1 > FP1
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

22._UF_667 RUQ_55

58.8 %
34 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

23._UF_667 UF_667_Fld#_119_Plt#_1

41.2 %
34 shared markers

USDA-TARS, United States of America
Location: Field: 119, Tree: 1
 Mars, 2018

 


  Key to SNP Markers

1TcSNP25 2TcSNP32 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP193 7TcSNP226 8TcSNP230 9TcSNP242 10TcSNP372
11TcSNP429 12TcSNP469 13TcSNP529 14TcSNP534 15TcSNP560
16TcSNP577 17TcSNP591 18TcSNP619 19TcSNP645 20TcSNP723
21TcSNP872 22TcSNP891 23TcSNP917 24TcSNP929 25TcSNP953
26TcSNP994 27TcSNP998 28TcSNP1062 29TcSNP1075 30TcSNP1144
31TcSNP1165 32TcSNP1253 33TcSNP1270 34TcSNP1350 35TcSNP1414
36TcSNP1442 37TcSNP1458 38TcSNP1484 39TcSNP1520