SNP Profiles of UF 12   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
GGATACGTCTACCGAGCTATGGAGCCCT
1._UF_667___
GGATACGTCTACCGAGCTATGGAGCCCT
2._UF_667___
GGATACGTCTACCGAGCTATGGAGCCCT
3._UF_667___
GGATACGTCTACCGAGCTATGGAGCCCT
4._UF_667___
GGATACGTCTACCGAGCTATGGAGCCCT
5._UF_667___
GGATACGTCTACCGAGCTATGGAGCCCT
6._UF_667___
GGATACGTCTACCGAGCTATGGAGCCCT
7._UF_667___
GGATACGTCTACCGAGCTATGGAGCCCT
8._UF_667___
GGATACGTCTACCGAGCTATGGAGCCCT
9._UF_667___
GGATACGTCTACCGAGCTATGGAGCCCT
10._UF_667___
GGATACGTCTAC__AGCTATGGAGCCCT
11._UF_667___
GGATACGTCTACCGAGCTATGGAGCCCT
12._UF_667___
GGATACGTCTACCGAGCTATGGAGCCCT
13._UF_667___
GGATACGTCTAC__AGCTATGGAGCCCT
14._UF_667___
GGATACGTCTACCGAGCTATGGAGCCCT
15._UF_667___
GGATACGTCTACCGAGCTATGGAGCCCT
16._UF_667___
GGATACGTCTACCGAGCTATGGAGCCCT
17._UF_667___
____ACGTCTACCGAGCTAT__AGCCCT
18._UF_667___
GGATACGTCTACGGAGCTATGGAGCCCT
19._UF_667___
____AC________AG________AC__
20._UF_667___
GGATACGTCTAACCAGCCAAGGAGAACC
21._UF_667___
GGATACACAGACCGAGAGATGG__CC__
22._UF_667___
GGATACACAGACCGAGAGATGG__CC__
23._UF_667___
GGATCCACAAAAGGAAAGATGG__AC__
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
GTCCACCTGGGTCGCCTTGGAACTAGCT
1._UF_667___
GTCCACCTGGGTCGCCTTGGAACTAGCT
2._UF_667___
GTCCACCTGGGTCGCCTTGGAACTAGCT
3._UF_667___
GTCCACCTGGGTCGCCTTGGAACTAGCT
4._UF_667___
GTCCACCTGGGTCGCCTTGGAACTAGCT
5._UF_667___
GTCCACCTGGGTCGCCTTGGAACTAGCT
6._UF_667___
GTCCACCTGGGTCGCCTTGGAACTAGCT
7._UF_667___
GTCCACCTGGGTCGCCTTGGAACTAGCT
8._UF_667___
GTCCACCTGGGTCGCCTTGGAACTAG__
9._UF_667___
GTCCACCTGGGTCGCCTTGGAACTAG__
10._UF_667___
GTCCACCTGGGTCGCCTTGGAACTAGCT
11._UF_667___
GTCCACCTGGGTCGCCTTGGAACTAG__
12._UF_667___
GTCCACCTGGGTCGCCTTGGAACTAG__
13._UF_667___
GTCCACCTGGGTCGCCTTGGAACTAGCT
14._UF_667___
GTCCACCTAGGTCGCCTTGGAACTAGCT
15._UF_667___
GTCCACCTAGGTCGCCTTGGAACTAGCT
16._UF_667___
GTCCACCTAGGTCGCCTTGGAACTAGCT
17._UF_667___
GTCCAACT__GTCGCC________AGCT
18._UF_667___
GTCCACCTAGGTCGCCTTGGAACTAGCT
19._UF_667___
__CCAC__AGGTCG__________AG__
20._UF_667___
GGCGCCTTAAGGGGCCCTCGAACCAGCC
21._UF_667___
ACCCACAG__ACCGGGAAGGAAAGAGAG
22._UF_667___
ACCCACAG__ACCGGGAAGGAAAGAGAG
23._UF_667___
ACCGACAA__CCGGAGAGGGATAAAAGG
 29 30 31 32 33 34 35 36 37 38 39 40   
_Input profile
AAAACTCTGTCCAATTCTCGAGCTX_XX_X
1._UF_667___
AAAACTCTGTCCAATTCTCGAGCTX_XX_X
2._UF_667___
AAAACTCTGTCCAATTCTCGAGCTX_XX_X
3._UF_667___
AAAACTCTGTCCAATTCTCGAGCTX_XX_X
4._UF_667___
AAAACTCTGTCCAATTCTCGAGCTX_XX_X
5._UF_667___
AAAACTCTGTCCAATTCTCGAGCTX_XX_X
6._UF_667___
AAAACTCTGTCCAATTCTCGAGCTX_XX_X
7._UF_667___
AAAACTCTGTCCAATTCTCGAGCTX_XX_X
8._UF_667___
AAAACTCTGTCCAATTCTCGAGCTX_XX_X
9._UF_667___
AAAACTCTGTCCAATTCTCGAGCTX_XX_X
10._UF_667___
AAAACTCTGTCCAATTCTCGAGCTX_XX_X
11._UF_667___
AAAACTCTGTCCAATTCTCGAGCTX_XX_X
12._UF_667___
AAAACTCTGTCCAATTCTCGAGCTX_XX_X
13._UF_667___
AAAACTCTGTCCAATTCTCGAGCTX_XX_X
14._UF_667___
AAAACTCTGTCCAATTCTCGAGCTX_XX_X
15._UF_667___
AAAACTCTGTCCAATTCTCGAGCTX_XX_X
16._UF_667___
AAAACTCTGTCCAATTCTCGAGCTX_XX_X
17._UF_667___
________GT______CTCGAG__X_XX_X
18._UF_667___
AAAACTCTGTCCAATTCTCGAGCTX_XX_X
19._UF_667___
AA__CT__GT________CG____X_XX_X
20._UF_667___
GGAACCCCTTTTCCTTCTCGGGCCX_XX_X
21._UF_667___
AAAA____AAGGAAAAAGCGAGAGX_XX_X
22._UF_667___
AAAA____AAGGAAAAAGCGAGAGX_XX_X
23._UF_667___
AGAA____AAAGACAGAGCCAGGGX_XX_X

Input profile: UF_667

 
Mars Center for Cocoa Science, Brazil
Location: 1206 10
 Dapeng Zhang, 2016

1._UF_667 GC-01-029-2-06

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

2._UF_667

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1206 5 > FP
 Dapeng Zhang, 2016

3._UF_667

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1206 1 > FP
 Dapeng Zhang, 2016

4._UF_667

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1206 3
 Dapeng Zhang, 2016

5._UF_667 GC-01-029-2-06

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

6._UF_667 GC-01-029-2-06

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP2
 Mars, 2018

7._UF_667 GC-01-029-2-06

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

8._UF_667

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1206 2
 Dapeng Zhang, 2016

9._UF_667 GC-01-029-2-06

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

10._UF_667

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1206 11 > F
 Dapeng Zhang, 2016

11._UF_667

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1206 7
 Dapeng Zhang, 2016

12._UF_667 GC-01-029-2-06

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

13._UF_667 GC-01-029-2-06

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11 > FP4
 Mars, 2018

14._UF_667

98.8 %
40 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

15._UF_667 RUQ_55

98.8 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

16._UF_667

98.8 %
40 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: C0244
 Dapeng Zhang, 2016

17._UF_667 RUQ_55

97.9 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

18._UF_667

97.5 %
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F466 T2
 Dapeng Zhang, 2016

19._UF_667 RUQ_55

92.3 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

20._UF_667

62.5 %
40 shared markers

Indonesian Coffee and Cocoa Research Institute (ICCRI), Indonesia
Location: KW 292 I-042
 Dapeng Zhang, 2016

21._UF_667 GC-01-29-2-6

57.1 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 6, Tree: 1 > FP1
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

22._UF_667 RUQ_55

57.1 %
35 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

23._UF_667 UF_667_Fld#_119_Plt#_1

40 %
35 shared markers

USDA-TARS, United States of America
Location: Field: 119, Tree: 1
 Mars, 2018

 


  Key to SNP Markers

1TcSNP25 2TcSNP32 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP193 7TcSNP226 8TcSNP230 9TcSNP242 10TcSNP372
11TcSNP429 12TcSNP469 13TcSNP529 14TcSNP534 15TcSNP560
16TcSNP577 17TcSNP591 18TcSNP619 19TcSNP645 20TcSNP723
21TcSNP872 22TcSNP891 23TcSNP917 24TcSNP929 25TcSNP953
26TcSNP994 27TcSNP998 28TcSNP1060 29TcSNP1062 30TcSNP1075
31TcSNP1144 32TcSNP1165 33TcSNP1253 34TcSNP1270 35TcSNP1350
36TcSNP1414 37TcSNP1442 38TcSNP1458 39TcSNP1484 40TcSNP1520