SNP Profiles of ICS 40   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
GGATACGTCTACAGCTATGGCCCTCCAC
1._UF_668___
GGATACGTCTACAGCTATGGCCCTCCAC
2._UF_668___
GGATACGT__ACAGCT__GGCCCTCC__
3._UF_668___
GGATACGTCTACAGCTATGGCCCTCCAC
4._UF_668___
GGATACGTCTACAGCTATGGCCCTCCAC
5._UF_668___
GGATACGTCTACAGCTATGGCCCTCCAC
6._UF_668___
GGATACGTCTACAGCTATGGCCCTCCAC
7._UF_668___
GGATACGTCTACAGCTATGGCCCTCCAC
8._UF_668___
GGATACGTCTACAGCTATGGCCCTCCAC
9._UF_668___
GGATACGTCTACAGCTATGGCCCTCCAC
10._UF_668___
GGATACGTCTACAGCTATGGCCCTCCAC
11._UF_668___
GGATACGTCTACAGCTATGGCCCTCCAC
12._UF_668___
GGATACGTCTACAGCTATGG__CTCCAC
13._UF_668___
GGATACGTCTACAGCTATGG__CTCCAC
14._UF_668___
GGATACACAGACAGAGATGGCC__CCAC
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
CTAGGTCGCCTTGGCTAAAACTGTCCAA
1._UF_668___
CTAGGTCGCCTTGGCTAAAACTGTCCAA
2._UF_668___
CTAGGTCGCCTTGGCTAAAACTGTCCAA
3._UF_668___
CTGGGTCGCCTTGGCTAAAACTGTCCAA
4._UF_668___
CTGGGTCGCCTTGGCTAAAACTGTCCAA
5._UF_668___
CTGGGTCGCCTTGGCTAAAACTGTCCAA
6._UF_668___
CTGGGTCGCCTTGGCTAAAACTGTCCAA
7._UF_668___
CTGGGTCGCCTTGGCTAAAACTGTCCAA
8._UF_668___
CTGGGTCGCCTTGGCTAAAACTGTCCAA
9._UF_668___
CTGGGTCGCCTTGGCTAAAACTGTCCAA
10._UF_668___
CTGGGTCGCCTTGGCTAAAACTGTCCAA
11._UF_668___
CTAGGTCGCCTTGGCTAAAACTGTCCAA
12._UF_668___
CTGGGTCGCCTTGGCTAAAACTGTCCAA
13._UF_668___
CTGGGTCGCCTTGGCTAAAACTGTCCAA
14._UF_668___
AG__ACCGGGAAGGAGAAAA__AAGGAA
 29 30 31 32           
_Input profile
TTCTCGAGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
1._UF_668___
TTCTCGAGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
2._UF_668___
TTCTCG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
3._UF_668___
TTCTCGAGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
4._UF_668___
TTCTCGAGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
5._UF_668___
TTCTCGAGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
6._UF_668___
TTCTCGAGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
7._UF_668___
TTCTCGAGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
8._UF_668___
TTCTCGAGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
9._UF_668___
TTCTCGAGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
10._UF_668___
TTCTCGAGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
11._UF_668___
TTCTCGGGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
12._UF_668___
TTCTCGAGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
13._UF_668___
TTCTCGAGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
14._UF_668___
AAAGCGAGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X

Input profile: UF_668

 
Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
 Dapeng Zhang, 2016

1._UF_668

identical
32 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

2._UF_668

identical
28 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: La Montaña Lot 8 Row 27 31_33
 Dapeng Zhang, 2016

3._UF_668

98.4 %
32 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1413 6
 Dapeng Zhang, 2016

4._UF_668

98.4 %
32 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1413 13
 Dapeng Zhang, 2016

5._UF_668

98.4 %
32 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1413 16 > F
 Dapeng Zhang, 2016

6._UF_668

98.4 %
32 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1413 5 > FP
 Dapeng Zhang, 2016

7._UF_668 GC-01-077-4-13

98.4 %
32 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP2
 Mars, 2018

8._UF_668 GC-01-077-4-13

98.4 %
32 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

9._UF_668 GC-01-077-4-13

98.4 %
32 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

10._UF_668 GC-01-077-4-13

98.4 %
32 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16 > FP4
 Mars, 2018

11._UF_668

98.4 %
32 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
 Dapeng Zhang, 2016

12._UF_668

98.4 %
31 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1413 7 > FP
 Dapeng Zhang, 2016

13._UF_668 GC-01-077-4-13

98.4 %
31 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP3
 Mars, 2018

14._UF_668 UF_668_Fld#_118_Plt#_6

58.6 %
29 shared markers

USDA-TARS, United States of America
Location: Field: 118, Tree: 6
Notes: TARS_Cacao_collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP25 2TcSNP32 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP193 7TcSNP230 8TcSNP242 9TcSNP372 10TcSNP429
11TcSNP529 12TcSNP534 13TcSNP577 14TcSNP591 15TcSNP619
16TcSNP645 17TcSNP723 18TcSNP872 19TcSNP891 20TcSNP917
21TcSNP929 22TcSNP994 23TcSNP1062 24TcSNP1075 25TcSNP1165
26TcSNP1253 27TcSNP1270 28TcSNP1350 29TcSNP1414 30TcSNP1442
31TcSNP1458 32TcSNP1484