SNP Profiles of GU 125 /C View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	GG	AT	AA	GT	TT	AA	CC	GG	CC	AA	GG	GG	AA	CC
1._RUQ_188	__	__	AA	__	__	__	__	GG	__	__	__	__	AA	__
2._RUQ_188	GG	AT	AA	TT	TT	AA	CC	GG	CC	AA	GG	GG	AA	CC
3._RUQ_188	__	__	AA	TT	TT	AA	CC	GG	CC	AA	__	GG	AA	CC
4._GU_125_/C	GG	AA	AA	TT	TT	AA	CC	GG	CC	AA	GG	GG	AA	CC
5._GU_125_/C	GG	AA	AA	TT	TT	AA	CC	GG	CC	AA	GG	GG	AA	CC
6._GU_125_/C	GG	AA	AA	TT	TT	AA	CC	GG	CC	AA	GG	GG	AA	CC
7._GU_125_/C	GG	AA	AA	TT	TT	AA	CC	GG	CC	AA	GG	GG	AA	CC
8._GC-01-138-7-17	GG	AA	AA	TT	TT	AA	CC	GG	CC	AA	GG	GG	AA	CC
9._GC-01-138-7-17	GG	AA	AA	TT	TT	AA	CC	GG	CC	AA	GG	GG	AA	CC
10._GC-01-138-7-17	GG	AA	AA	TT	TT	AA	CC	GG	CC	AA	GG	GG	AA	CC
11._GC-01-138-7-17	GG	AA	AA	TT	TT	AA	CC	GG	CC	AA	GG	GG	AA	CC
12._GU_125_/C	GG	AA	AA	TT	TT	AA	CC	GG	CC	AA	GG	GG	AA	CC
13._GU_125_/C	GG	AA	AA	TT	TT	AA	CC	GG	CC	AA	GG	GG	AA	CC
14._GU_125_/C	GG	AA	AA	TT	TT	AA	CC	GG	CC	AA	GG	GG	AA	CC
15._GC-01-138-7-17	GG	AA	AA	TT	TT	AA	CC	GG	CC	AA	GG	GG	AA	CC
16._GC-01-138-7-17	GG	AA	AA	TT	TT	AA	CC	GG	CC	AA	GG	GG	AA	CC
17._RUQ_188	GG	AT	AA	AA	AA	AA	GG	GG	GG	AA	GG	__	AA	__
18._GC-01-138-7-17	GG	AA	AA	AA	AA	AA	GG	GG	GG	AA	GG	__	AA	__

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	GG	CC	AC	CC	AG	GG	GG	CC	CC	GG	AA	CC	AG	CC
1._RUQ_188	__	CC	AC	__	AG	GG	GG	__	__	__	__	__	AG	__
2._RUQ_188	GG	CC	AC	CC	AG	GG	GG	CC	CC	GG	AA	CC	AG	CC
3._RUQ_188	GG	CC	AC	CC	__	GG	GG	CC	__	__	__	__	AG	CC
4._GU_125_/C	GG	CC	CC	CC	AA	GG	GG	CC	CC	GG	AA	CC	GG	CC
5._GU_125_/C	GG	CC	CC	CC	AA	GG	GG	CC	CC	GG	AA	CC	GG	CC
6._GU_125_/C	GG	CC	CC	CC	AA	GG	GG	CC	CC	GG	AA	CC	GG	CC
7._GU_125_/C	GG	CC	CC	CC	AA	GG	GG	CC	CC	GG	AA	CC	GG	CC
8._GC-01-138-7-17	GG	CC	CC	CC	AA	GG	GG	CC	CC	GG	AA	CC	GG	CC
9._GC-01-138-7-17	GG	CC	CC	CC	AA	GG	GG	CC	CC	GG	AA	CC	GG	CC
10._GC-01-138-7-17	GG	CC	CC	CC	AA	GG	GG	CC	CC	GG	AA	CC	GG	CC
11._GC-01-138-7-17	GG	CC	CC	CC	AA	GG	GG	CC	CC	GG	AA	CC	GG	CC
12._GU_125_/C	GG	CC	CC	CC	AA	GG	GG	CC	CC	GG	AA	CC	GG	CC
13._GU_125_/C	__	CC	CC	CC	AA	GG	GG	CC	CC	GG	AA	CC	GG	CC
14._GU_125_/C	GG	CC	CC	CC	AA	GG	GG	CC	CC	GG	AA	CC	GG	CC
15._GC-01-138-7-17	__	CC	CC	CC	AA	GG	GG	CC	CC	GG	AA	CC	GG	CC
16._GC-01-138-7-17	GG	CC	CC	CC	AA	GG	GG	CC	CC	GG	AA	CC	GG	CC
17._RUQ_188	CC	CC	AC	GG	__	CC	CC	GG	GG	GG	AA	GG	AG	GG
18._GC-01-138-7-17	CC	CC	CC	GG	__	CC	CC	GG	GG	GG	AA	GG	GG	GG

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	GG	AA	CC	CC	TT	TT	CC	TT	CC	CG	GG	CC	X_X	X_X
1._RUQ_188	GG	__	CC	__	TT	__	__	__	__	CG	__	__	X_X	X_X
2._RUQ_188	GG	AA	CC	CC	TT	TT	CC	TT	CC	CG	GG	CC	X_X	X_X
3._RUQ_188	__	__	__	__	TT	__	__	__	CC	CG	GG	__	X_X	X_X
4._GU_125_/C	GG	AA	CC	CC	TT	TT	__	TT	CC	CC	GG	CC	X_X	X_X
5._GU_125_/C	GG	AA	CC	CC	TT	TT	__	TT	CC	CC	GG	CC	X_X	X_X
6._GU_125_/C	GG	AA	CC	CC	TT	TT	__	TT	CC	CC	GG	CC	X_X	X_X
7._GU_125_/C	GG	AA	CC	CC	TT	TT	__	TT	CC	CC	GG	CC	X_X	X_X
8._GC-01-138-7-17	GG	AA	CC	CC	TT	TT	__	TT	CC	CC	GG	CC	X_X	X_X
9._GC-01-138-7-17	GG	AA	CC	CC	TT	TT	__	TT	CC	CC	GG	CC	X_X	X_X
10._GC-01-138-7-17	GG	AA	CC	CC	TT	TT	__	TT	CC	CC	GG	CC	X_X	X_X
11._GC-01-138-7-17	GG	AA	CC	CC	TT	TT	__	TT	CC	CC	GG	CC	X_X	X_X
12._GU_125_/C	GG	AA	CC	CC	TT	TT	__	TT	CC	CC	GG	CC	X_X	X_X
13._GU_125_/C	GG	AA	CC	CC	TT	TT	__	TT	CC	CC	GG	CC	X_X	X_X
14._GU_125_/C	GG	__	CC	CC	TT	TT	__	TT	CC	CC	GG	CC	X_X	X_X
15._GC-01-138-7-17	GG	AA	CC	CC	TT	TT	__	TT	CC	CC	GG	CC	X_X	X_X
16._GC-01-138-7-17	GG	__	CC	CC	TT	TT	__	TT	CC	CC	GG	CC	X_X	X_X
17._RUQ_188	GG	AA	__	__	AA	AA	CC	AA	GG	CG	GG	GG	X_X	X_X
18._GC-01-138-7-17	GG	AA	__	__	AA	AA	__	AA	GG	GG	GG	GG	X_X	X_X

Input profile: GU_125_/C RUQ_188

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

1._GU_125_/C RUQ_188

identical
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

GU
0.998

2._GU_125_/C RUQ_188

98.8 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

3._GU_125_/C RUQ_188

97.9 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

4._GU_125_/C

92.3 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1717 4 > FP

Dapeng Zhang, 2016

5._GU_125_/C

92.3 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1717 10 > F

Dapeng Zhang, 2016

6._GU_125_/C

92.3 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1717 1 > FP

Dapeng Zhang, 2016

7._GU_125_/C

92.3 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1717 3

Dapeng Zhang, 2016

8._GU_125_/C GC-01-138-7-17

92.3 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10 > FP2

9._GU_125_/C GC-01-138-7-17

92.3 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

10._GU_125_/C GC-01-138-7-17

92.3 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

11._GU_125_/C GC-01-138-7-17

92.3 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP3

12._GU_125_/C

92.3 %
39 shared markers

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Cocoa Research Institute of Ghana (CRIG), Ghana

Location: Q6_EXT_2 20

Dapeng Zhang, 2016

13._GU_125_/C

92.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1717 11

Dapeng Zhang, 2016

14._GU_125_/C

92.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1717 9

Dapeng Zhang, 2016

15._GU_125_/C GC-01-138-7-17

92.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 11

Notes: 11

16._GU_125_/C GC-01-138-7-17

92.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

17._GU_125_/C RUQ_188

51.4 %
35 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

18._GU_125_/C GC-01-138-7-17

44.1 %
34 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 1, Block: 7, Rep: 17, Tree: 3

Notes: MCCS_Structure_refs_above_0.9membership

Key to SNP Markers

Key to SNP Markers

1	TcSNP25	2	TcSNP32	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP193	7	TcSNP226	8	TcSNP230	9	TcSNP242	10	TcSNP372
11	TcSNP429	12	TcSNP469	13	TcSNP529	14	TcSNP534	15	TcSNP560
16	TcSNP577	17	TcSNP591	18	TcSNP619	19	TcSNP645	20	TcSNP723
21	TcSNP872	22	TcSNP891	23	TcSNP917	24	TcSNP929	25	TcSNP953
26	TcSNP994	27	TcSNP998	28	TcSNP1060	29	TcSNP1062	30	TcSNP1075
31	TcSNP1144	32	TcSNP1165	33	TcSNP1253	34	TcSNP1270	35	TcSNP1350
36	TcSNP1414	37	TcSNP1442	38	TcSNP1458	39	TcSNP1484	40	TcSNP1520