SNP Profiles of AMAZ 3 /2   View Data

 Show/Hide Profiles

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCAACCTTTTAATTTTCTCCAAGGCCAA
1._GC-03-022-2-11
CCAACCTTTTAATTTTCTCCAAGGCCAA
2._GC-03-022-2-11
CCAACCTTTTAATTTTCTCCAAGGCCAA
3._GC-03-022-2-11
CCAACCTTTTAATTTTCTCCAAGGCCAA
4._GC-03-022-2-11
CCAACCTTTTAATTTTCTCCAAGGCCAA
5._GC-03-022-2-11
CCAACCTTTTAATTTTCTCCAAGGCCAA
6._GC-03-022-2-11
CCAACCTTTTAATTTTCTCCAAGGCCAA
7._AMAZ_3_/2
CCAACCTTTTAATTTTCTCCAAGGCCAA
8._AMAZ_3_/2
CCAACCTTTTAATTTTCTCCAAGGCCAA
9._AMAZ_3_/2
CCAACCTTTTAATTTTCTCCAAGGCCAA
10._AMAZ_3_/2
CCAACCTTTTAATTTTCTCCAAGGCCAA
11._AMAZ_3_/2
CCAACCTTTTAATTTTCTCCAAGGCCAA
12._AMAZ_3_/2
CCAACCTTTTAATTTTCTCCAAGGCCAA
13._GC-03-022-2-11
CC__CCTTTTAATTTTCTCCAAGGCCAA
14._GC-03-022-2-11
CCAACCTT__AATTTTCTCCAAGGCCAA
15._GC-03-022-2-11
CCAACCTTTT__TTTTCTCCAAGGCCAA
16._GC-03-022-2-11
CCAACCTTTTAATTTTCTCCAAGGCCAA
17._AMAZ_3_/2
CCAACCTTTTAATTTTCTCCAAGGCCAA
18._AMAZ_3_/2
CCAACCTTTT__TTTTCTCCAAGGCCAA
19._AMAZ_3_/2
CCAACCTT__AATTTTCTCCAAGGCCAA
20._AMAZ_3_/2
CC__CCTTTTAATTTTCTCCAAGGCCAA
21._RUQ_91
__AACC________TT________CCAA
22._RUQ_91
____CC________TT__CC__GG__AA
23._RUQ_91b
____CC________TT__CC__GG__AA
24._RUQ_91
CCAGCCTTTTAATTTTCTCCAAGGCTAA
25._AMAZ_3_/2
CCAGCCTTTTAATTGTCCCCAAAGCCAG
26._GC-03-022-2-11
CCAGCCTTTTAATTGTCCCCAAAGCCAG
27._GC-03-022-2-11
CCAGCCTTTTAATTGTCCCCAAAGCCAG
28._GC-03-022-2-11
CCAGCCTTTTAATTGTCCCCAAAGCCAG
29._AMAZ_3_/2
CCAGCCTTTTAATTGTCCCCAAAGCCAG
30._AMAZ_3_/2
CCAGCCTTTTAATTGTCCCCAAAGCCAG
31._GC-03-022-2-11
CCAGCCTTTTAATTGTCCCCAAAGCCAG
32._AMAZ_3_/2
CCAGCCTTTTAATTGTCCCCAAAGCCAG
33._RUQ_91
GGAAGGAAAAAAAAAA____AAGGGGAA
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
CTATGGCTCCCGGTAACCAACCGGCCCC
1._GC-03-022-2-11
CTATGGCTCCCGGTAACCAA__GGCCCC
2._GC-03-022-2-11
CTATGGCTCCCGGTAACCAA__GGCCCC
3._GC-03-022-2-11
CTATGGCTCCCGGTAACCAA__GGCCCC
4._GC-03-022-2-11
CTATGGCTCCCGGTAACCAA__GGCCCC
5._GC-03-022-2-11
CTATGGCTCCCGGTAACCAA__GGCCCC
6._GC-03-022-2-11
CTATGGCTCCCGGTAACCAA__GGCCCC
7._AMAZ_3_/2
CTATGGCTCCCGGTAACCAA__GGCCCC
8._AMAZ_3_/2
CTATGGCTCCCGGTAACCAA__GGCCCC
9._AMAZ_3_/2
CTATGGCTCCCGGTAACCAA__GGCCCC
10._AMAZ_3_/2
CTATGGCTCCCGGTAACCAA__GGCCCC
11._AMAZ_3_/2
CTATGGCTCCCGGTAACCAA__GGCCCC
12._AMAZ_3_/2
CTATGGCTCCCGGTAACCAA__GGCCCC
13._GC-03-022-2-11
CTATGGCTCCCGGTAACCAA__GGCCCC
14._GC-03-022-2-11
CTATGGCTCCCGGTAACCAA__GGCCCC
15._GC-03-022-2-11
CTATGGCTCCCGGTAACCAA__GGCCCC
16._GC-03-022-2-11
CTATGGCTCCCGGTAACCAA__GGCCCC
17._AMAZ_3_/2
CTATGGCTCCCGGTAACCAA__GGCCCC
18._AMAZ_3_/2
CTATGGCTCCCGGTAACCAA__GGCCCC
19._AMAZ_3_/2
CTATGGCTCCCGGTAACCAA__GGCCCC
20._AMAZ_3_/2
CTATGGCTCCCGGTAACCAA__GGCCCC
21._RUQ_91
________CC__GT__CCAACC__CCCC
22._RUQ_91
__________CGGTAA__AA______CC
23._RUQ_91b
__________CGGT____AA______CC
24._RUQ_91
CTATGGCTCCCGGTAACCAACCGGCCCC
25._AMAZ_3_/2
CTAACGCCCTGGGGAACTACGGGGCTCC
26._GC-03-022-2-11
CTAACGCCCTGGGGAACTACGGGGCTCC
27._GC-03-022-2-11
CTAACGCCCTGGGGAACTACGGGGCTCC
28._GC-03-022-2-11
CTAACGCCCTGGGGAACTACGGGGCTCC
29._AMAZ_3_/2
CTAACGCCCTGGGGAACTACGGGGCTCC
30._AMAZ_3_/2
CTAACGCCCTGGGGAACTACGGGGCTCC
31._GC-03-022-2-11
CTAACGCCCTGGGG__CTACGGGGCTCC
32._AMAZ_3_/2
CTAACGCCCTGGGG__CTACGGGGCTCC
33._RUQ_91
AGATGGAGGGCGAC__GGAACCCC__CC
 29 30 31 32 33 34 35 36 37 38 39 40   
_Input profile
AAGGATTTAAGGAACCGTAAATGGX_XX_X
1._GC-03-022-2-11
AAGGATTTAAGGAACCGTAAATGGX_XX_X
2._GC-03-022-2-11
AAGGATTTAAGGAACCGTAAATGGX_XX_X
3._GC-03-022-2-11
AAGGATTTAAGGAACCGTAAATGGX_XX_X
4._GC-03-022-2-11
AAGGATTTAAGGAACCGTAAATGGX_XX_X
5._GC-03-022-2-11
AAGGATTTAAGGAACCGTAAATGGX_XX_X
6._GC-03-022-2-11
AAGGATTTAAGGAACCGTAAATGGX_XX_X
7._AMAZ_3_/2
AAGGATTTAAGGAACCGTAAATGGX_XX_X
8._AMAZ_3_/2
AAGGATTTAAGGAACCGTAAATGGX_XX_X
9._AMAZ_3_/2
AAGGATTTAAGGAACCGTAAATGGX_XX_X
10._AMAZ_3_/2
AAGGATTTAAGGAACCGTAAATGGX_XX_X
11._AMAZ_3_/2
AAGGATTTAAGGAACCGTAAATGGX_XX_X
12._AMAZ_3_/2
AAGGATTTAAGGAACCGTAAATGGX_XX_X
13._GC-03-022-2-11
AAGGATTTAAGGAACCGTAAATGGX_XX_X
14._GC-03-022-2-11
AAGGATTTAAGGAACCGTAAATGGX_XX_X
15._GC-03-022-2-11
AAGGATTTAAGGAACCGTAAATGGX_XX_X
16._GC-03-022-2-11
AAGGATTTAAGGAA__GTAAATGGX_XX_X
17._AMAZ_3_/2
AAGGATTTAAGGAA__GTAAATGGX_XX_X
18._AMAZ_3_/2
AAGGATTTAAGGAACCGTAAATGGX_XX_X
19._AMAZ_3_/2
AAGGATTTAAGGAACCGTAAATGGX_XX_X
20._AMAZ_3_/2
AAGGATTTAAGGAACCGTAAATGGX_XX_X
21._RUQ_91
____AT__AAGGAACCGTAA____X_XX_X
22._RUQ_91
________AA________AA____X_XX_X
23._RUQ_91b
________AA________AA____X_XX_X
24._RUQ_91
AAGGATTTAAGGAACCGTAAATGGX_XX_X
25._AMAZ_3_/2
AGGGATCTGGCCACCTGGACTTGGX_XX_X
26._GC-03-022-2-11
AGGGATCTGGCCACCTGGACTTGGX_XX_X
27._GC-03-022-2-11
AGGGATCTGGCCACCTGGACTTGGX_XX_X
28._GC-03-022-2-11
AGGGATCTGGCCACCTGGACTTGGX_XX_X
29._AMAZ_3_/2
AGGGATCTGGCCACCTGGACTTGGX_XX_X
30._AMAZ_3_/2
AGGGATCTGGCCACCTGGACTTGGX_XX_X
31._GC-03-022-2-11
AGGGATCTGGCCACCTGGACTTGGX_XX_X
32._AMAZ_3_/2
AGGGATCTGGCCACCTGGACTTGGX_XX_X
33._RUQ_91
__GGATAAAACCAAGGACAAATGGX_XX_X

Input profile: AMAZ_3_/2

 
 View  View all  Clone  Any
Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P97 225
 Dapeng Zhang, 2016

1._AMAZ_3_/2 GC-03-022-2-11

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

2._AMAZ_3_/2 GC-03-022-2-11

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP2
 Mars, 2018

3._AMAZ_3_/2 GC-03-022-2-11

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

4._AMAZ_3_/2 GC-03-022-2-11

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

5._AMAZ_3_/2 GC-03-022-2-11

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP4
 Mars, 2018

6._AMAZ_3_/2 GC-03-022-2-11

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP4
 Mars, 2018

7._AMAZ_3_/2

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 3211 12
 Dapeng Zhang, 2016

8._AMAZ_3_/2

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 3211 13
 Dapeng Zhang, 2016

9._AMAZ_3_/2

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 3211 15
 Dapeng Zhang, 2016

10._AMAZ_3_/2

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 3211 1 > FP
 Dapeng Zhang, 2016

11._AMAZ_3_/2

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 3211 14 > F
 Dapeng Zhang, 2016

12._AMAZ_3_/2

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 3211 5 > FP
 Dapeng Zhang, 2016

13._AMAZ_3_/2 GC-03-022-2-11

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

14._AMAZ_3_/2 GC-03-022-2-11

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

15._AMAZ_3_/2 GC-03-022-2-11

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

16._AMAZ_3_/2 GC-03-022-2-11

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

17._AMAZ_3_/2

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 3211 7
 Dapeng Zhang, 2016

18._AMAZ_3_/2

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 3211 8
 Dapeng Zhang, 2016

19._AMAZ_3_/2

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 3211 9
 Dapeng Zhang, 2016

20._AMAZ_3_/2

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 3211 16
 Dapeng Zhang, 2016

21._AMAZ_3_/2 RUQ_91

identical
19 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

22._AMAZ_3_/2 RUQ_91

identical
12 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 
View Data
IMC
0.570 Nac
0.115 Par
0.146 Pur
0.097

23._AMAZ_3_/2 RUQ_91b

identical
11 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

24._AMAZ_3_/2 RUQ_91

97.5 %
40 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

25._AMAZ_3_/2

66.3 %
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 3211 10
 Dapeng Zhang, 2016

26._AMAZ_3_/2 GC-03-022-2-11

66.3 %
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

27._AMAZ_3_/2 GC-03-022-2-11

66.3 %
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

28._AMAZ_3_/2 GC-03-022-2-11

66.3 %
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

29._AMAZ_3_/2

66.3 %
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 3211 2
 Dapeng Zhang, 2016

30._AMAZ_3_/2

66.3 %
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 3211 3 > FP
 Dapeng Zhang, 2016

31._AMAZ_3_/2 GC-03-022-2-11

65.4 %
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

32._AMAZ_3_/2

65.4 %
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 3211 4
 Dapeng Zhang, 2016

33._AMAZ_3_/2 RUQ_91

51.4 %
35 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25