SNP Profiles of AMAZ 3 /2   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCAGCCTTTTAATTGTCCCCAAAGCCAG
1._AMAZ_3_/2
CCAGCCTTTTAATTGTCCCCAAAGCCAG
2._GC-03-022-2-11
CCAGCCTTTTAATTGTCCCCAAAGCCAG
3._GC-03-022-2-11
CCAGCCTTTTAATTGTCCCCAAAGCCAG
4._GC-03-022-2-11
CCAGCCTTTTAATTGTCCCCAAAGCCAG
5._AMAZ_3_/2
CCAGCCTTTTAATTGTCCCCAAAGCCAG
6._GC-03-022-2-11
CCAGCCTTTTAATTGTCCCCAAAGCCAG
7._AMAZ_3_/2
CCAGCCTTTTAATTGTCCCCAAAGCCAG
8._GC-03-022-2-11
CCAACCTTTTAATTTTCTCCAAGGCCAA
9._GC-03-022-2-11
CC__CCTTTTAATTTTCTCCAAGGCCAA
10._AMAZ_3_/2
CCAACCTTTTAATTTTCTCCAAGGCCAA
11._AMAZ_3_/2
CC__CCTTTTAATTTTCTCCAAGGCCAA
12._GC-03-022-2-11
CCAACCTTTTAATTTTCTCCAAGGCCAA
13._GC-03-022-2-11
CCAACCTTTTAATTTTCTCCAAGGCCAA
14._GC-03-022-2-11
CCAACCTTTTAATTTTCTCCAAGGCCAA
15._GC-03-022-2-11
CCAACCTTTTAATTTTCTCCAAGGCCAA
16._GC-03-022-2-11
CCAACCTTTTAATTTTCTCCAAGGCCAA
17._GC-03-022-2-11
CCAACCTTTTAATTTTCTCCAAGGCCAA
18._AMAZ_3_/2
CCAACCTTTTAATTTTCTCCAAGGCCAA
19._AMAZ_3_/2
CCAACCTTTTAATTTTCTCCAAGGCCAA
20._AMAZ_3_/2
CCAACCTTTTAATTTTCTCCAAGGCCAA
21._AMAZ_3_/2
CCAACCTTTTAATTTTCTCCAAGGCCAA
22._AMAZ_3_/2
CCAACCTTTTAATTTTCTCCAAGGCCAA
23._AMAZ_3_/2
CCAACCTTTTAATTTTCTCCAAGGCCAA
24._GC-03-022-2-11
CCAACCTT__AATTTTCTCCAAGGCCAA
25._GC-03-022-2-11
CCAACCTTTT__TTTTCTCCAAGGCCAA
26._AMAZ_3_/2
CCAACCTTTT__TTTTCTCCAAGGCCAA
27._AMAZ_3_/2
CCAACCTT__AATTTTCTCCAAGGCCAA
28._RUQ_91
CCAGCCTTTTAATTTTCTCCAAGGCTAA
29._AMAZ_3_/2
CCAACCTTTTAATTTTCTCCAAGGCCAA
30._RUQ_91
____CC________TT__CC__GG__AA
31._RUQ_91b
____CC________TT__CC__GG__AA
32._RUQ_91
__AACC________TT________CCAA
33._RUQ_91
GGAAGGAAAAAAAAAA____AAGGGGAA
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
CTAACGCCCTGGGGAACTACGGGGCTCC
1._AMAZ_3_/2
CTAACGCCCTGGGGAACTACGGGGCTCC
2._GC-03-022-2-11
CTAACGCCCTGGGGAACTACGGGGCTCC
3._GC-03-022-2-11
CTAACGCCCTGGGGAACTACGGGGCTCC
4._GC-03-022-2-11
CTAACGCCCTGGGGAACTACGGGGCTCC
5._AMAZ_3_/2
CTAACGCCCTGGGGAACTACGGGGCTCC
6._GC-03-022-2-11
CTAACGCCCTGGGG__CTACGGGGCTCC
7._AMAZ_3_/2
CTAACGCCCTGGGG__CTACGGGGCTCC
8._GC-03-022-2-11
CTATGGCTCCCGGTAACCAA__GGCCCC
9._GC-03-022-2-11
CTATGGCTCCCGGTAACCAA__GGCCCC
10._AMAZ_3_/2
CTATGGCTCCCGGTAACCAA__GGCCCC
11._AMAZ_3_/2
CTATGGCTCCCGGTAACCAA__GGCCCC
12._GC-03-022-2-11
CTATGGCTCCCGGTAACCAA__GGCCCC
13._GC-03-022-2-11
CTATGGCTCCCGGTAACCAA__GGCCCC
14._GC-03-022-2-11
CTATGGCTCCCGGTAACCAA__GGCCCC
15._GC-03-022-2-11
CTATGGCTCCCGGTAACCAA__GGCCCC
16._GC-03-022-2-11
CTATGGCTCCCGGTAACCAA__GGCCCC
17._GC-03-022-2-11
CTATGGCTCCCGGTAACCAA__GGCCCC
18._AMAZ_3_/2
CTATGGCTCCCGGTAACCAA__GGCCCC
19._AMAZ_3_/2
CTATGGCTCCCGGTAACCAA__GGCCCC
20._AMAZ_3_/2
CTATGGCTCCCGGTAACCAA__GGCCCC
21._AMAZ_3_/2
CTATGGCTCCCGGTAACCAA__GGCCCC
22._AMAZ_3_/2
CTATGGCTCCCGGTAACCAA__GGCCCC
23._AMAZ_3_/2
CTATGGCTCCCGGTAACCAA__GGCCCC
24._GC-03-022-2-11
CTATGGCTCCCGGTAACCAA__GGCCCC
25._GC-03-022-2-11
CTATGGCTCCCGGTAACCAA__GGCCCC
26._AMAZ_3_/2
CTATGGCTCCCGGTAACCAA__GGCCCC
27._AMAZ_3_/2
CTATGGCTCCCGGTAACCAA__GGCCCC
28._RUQ_91
CTATGGCTCCCGGTAACCAACCGGCCCC
29._AMAZ_3_/2
CTATGGCTCCCGGTAACCAACCGGCCCC
30._RUQ_91
__________CGGTAA__AA______CC
31._RUQ_91b
__________CGGT____AA______CC
32._RUQ_91
________CC__GT__CCAACC__CCCC
33._RUQ_91
AGATGGAGGGCGAC__GGAACCCC__CC
 29 30 31 32 33 34 35 36 37 38 39 40   
_Input profile
AGGGATCTGGCCACCTGGACTTGGX_XX_X
1._AMAZ_3_/2
AGGGATCTGGCCACCTGGACTTGGX_XX_X
2._GC-03-022-2-11
AGGGATCTGGCCACCTGGACTTGGX_XX_X
3._GC-03-022-2-11
AGGGATCTGGCCACCTGGACTTGGX_XX_X
4._GC-03-022-2-11
AGGGATCTGGCCACCTGGACTTGGX_XX_X
5._AMAZ_3_/2
AGGGATCTGGCCACCTGGACTTGGX_XX_X
6._GC-03-022-2-11
AGGGATCTGGCCACCTGGACTTGGX_XX_X
7._AMAZ_3_/2
AGGGATCTGGCCACCTGGACTTGGX_XX_X
8._GC-03-022-2-11
AAGGATTTAAGGAA__GTAAATGGX_XX_X
9._GC-03-022-2-11
AAGGATTTAAGGAACCGTAAATGGX_XX_X
10._AMAZ_3_/2
AAGGATTTAAGGAA__GTAAATGGX_XX_X
11._AMAZ_3_/2
AAGGATTTAAGGAACCGTAAATGGX_XX_X
12._GC-03-022-2-11
AAGGATTTAAGGAACCGTAAATGGX_XX_X
13._GC-03-022-2-11
AAGGATTTAAGGAACCGTAAATGGX_XX_X
14._GC-03-022-2-11
AAGGATTTAAGGAACCGTAAATGGX_XX_X
15._GC-03-022-2-11
AAGGATTTAAGGAACCGTAAATGGX_XX_X
16._GC-03-022-2-11
AAGGATTTAAGGAACCGTAAATGGX_XX_X
17._GC-03-022-2-11
AAGGATTTAAGGAACCGTAAATGGX_XX_X
18._AMAZ_3_/2
AAGGATTTAAGGAACCGTAAATGGX_XX_X
19._AMAZ_3_/2
AAGGATTTAAGGAACCGTAAATGGX_XX_X
20._AMAZ_3_/2
AAGGATTTAAGGAACCGTAAATGGX_XX_X
21._AMAZ_3_/2
AAGGATTTAAGGAACCGTAAATGGX_XX_X
22._AMAZ_3_/2
AAGGATTTAAGGAACCGTAAATGGX_XX_X
23._AMAZ_3_/2
AAGGATTTAAGGAACCGTAAATGGX_XX_X
24._GC-03-022-2-11
AAGGATTTAAGGAACCGTAAATGGX_XX_X
25._GC-03-022-2-11
AAGGATTTAAGGAACCGTAAATGGX_XX_X
26._AMAZ_3_/2
AAGGATTTAAGGAACCGTAAATGGX_XX_X
27._AMAZ_3_/2
AAGGATTTAAGGAACCGTAAATGGX_XX_X
28._RUQ_91
AAGGATTTAAGGAACCGTAAATGGX_XX_X
29._AMAZ_3_/2
AAGGATTTAAGGAACCGTAAATGGX_XX_X
30._RUQ_91
________AA________AA____X_XX_X
31._RUQ_91b
________AA________AA____X_XX_X
32._RUQ_91
____AT__AAGGAACCGTAA____X_XX_X
33._RUQ_91
__GGATAAAACCAAGGACAAATGGX_XX_X

Input profile: AMAZ_3_/2

 
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Mars Center for Cocoa Science, Brazil
Location: 3211 10
 Dapeng Zhang, 2016

1._AMAZ_3_/2

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 3 > FP
 Dapeng Zhang, 2016

2._AMAZ_3_/2 GC-03-022-2-11

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

3._AMAZ_3_/2 GC-03-022-2-11

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

4._AMAZ_3_/2 GC-03-022-2-11

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

5._AMAZ_3_/2

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 2
 Dapeng Zhang, 2016

6._AMAZ_3_/2 GC-03-022-2-11

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

7._AMAZ_3_/2

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 4
 Dapeng Zhang, 2016

8._AMAZ_3_/2 GC-03-022-2-11

68.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

9._AMAZ_3_/2 GC-03-022-2-11

68.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

10._AMAZ_3_/2

68.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 7
 Dapeng Zhang, 2016

11._AMAZ_3_/2

68.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 16
 Dapeng Zhang, 2016

12._AMAZ_3_/2 GC-03-022-2-11

67.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

13._AMAZ_3_/2 GC-03-022-2-11

67.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP2
 Mars, 2018

14._AMAZ_3_/2 GC-03-022-2-11

67.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

15._AMAZ_3_/2 GC-03-022-2-11

67.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

16._AMAZ_3_/2 GC-03-022-2-11

67.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP4
 Mars, 2018

17._AMAZ_3_/2 GC-03-022-2-11

67.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP4
 Mars, 2018

18._AMAZ_3_/2

67.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 12
 Dapeng Zhang, 2016

19._AMAZ_3_/2

67.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 13
 Dapeng Zhang, 2016

20._AMAZ_3_/2

67.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 15
 Dapeng Zhang, 2016

21._AMAZ_3_/2

67.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 1 > FP
 Dapeng Zhang, 2016

22._AMAZ_3_/2

67.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 14 > F
 Dapeng Zhang, 2016

23._AMAZ_3_/2

67.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 5 > FP
 Dapeng Zhang, 2016

24._AMAZ_3_/2 GC-03-022-2-11

67.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

25._AMAZ_3_/2 GC-03-022-2-11

67.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

26._AMAZ_3_/2

67.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 8
 Dapeng Zhang, 2016

27._AMAZ_3_/2

67.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 9
 Dapeng Zhang, 2016

28._AMAZ_3_/2 RUQ_91

66.3 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

29._AMAZ_3_/2

66.3 %
40 shared markers

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Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P97 225
 Dapeng Zhang, 2016

30._AMAZ_3_/2 RUQ_91

62.5 %
12 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 
View Data
IMC
0.570 Nac
0.115 Par
0.146 Pur
0.097

31._AMAZ_3_/2 RUQ_91b

59.1 %
11 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

32._AMAZ_3_/2 RUQ_91

52.6 %
19 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

33._AMAZ_3_/2 RUQ_91

34.3 %
35 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25