SNP Profiles of AMAZ 5 /2   View Data

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 Key

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_Input profile
TTAAGGCCTTAACCTTCCTTAAAACCGG
1._RUQ_93
____CC________TT__CC__AG__AA
2._AMAZ_5_/2
CCGGCCTTTTAATTTTCCCCAAAGCTAA
3._AMAZ_5_/2
CCGGCCTTTTAATTTTCCCCAAAGCTAA
4._AMAZ_5_/2
CCGGCCTTTTAATTTTCCCCAAAGCTAA
5._AMAZ_5_/2
CCGGCCTTTTAATTTTCCCCAAAGCTAA
6._GC-03-008-1-08
CCGGCCTTTTAATTTTCCCCAAAGCTAA
7._GC-03-008-1-08
CCGGCCTTTTAATTTTCCCCAAAGCTAA
8._GC-03-008-1-08
CCGGCCTTTTAATTTTCCCCAAAGCTAA
9._GC-03-008-1-08
CCGGCCTTTTAATTTTCCCCAAAGCTAA
10._RUQ_93
CCGGCCTTTTAATTTTCCCCAAAGTTAA
11._RUQ_93
__GGCCTT______TT________CTAA
 1516171819202122232425262728
_Input profile
TTAAGGTTCCGGGGAATTAACCTTTTCC
1._RUQ_93
__________CCGGAA__AAGG____CC
2._AMAZ_5_/2
CCAAGGCCCTCCGGAACTAAGGGGCCCC
3._AMAZ_5_/2
CCAAGGCCCTCCGGAACTAAGGGGCCCC
4._AMAZ_5_/2
CCAAGGCCCTCCGGAACTAAGGGGCCCC
5._AMAZ_5_/2
CCAAGGCCCTCCGGAACTAAGGGGCCCC
6._GC-03-008-1-08
CCAAGGCCCTCCGGAACTAAGGGGCCCC
7._GC-03-008-1-08
CCAAGGCCCTCCGGAACTAAGGGGCCCC
8._GC-03-008-1-08
CCAAGGCCCTCCGGAACTAAGGGGCCCC
9._GC-03-008-1-08
CCAAGGCCCTCCGGAACTAAGGGGCCCC
10._RUQ_93
CCAAGGCCCTCCGGAACTAAGGGGCCCC
11._RUQ_93
________TTCCGG__CTAAGGGGCCCC
 293031323334353637383940  
_Input profile
AAGGAACCAACCAACCTTCCTTGGX_XX_X
1._RUQ_93
________AA________AA____X_XX_X
2._AMAZ_5_/2
AAGGAATTAAGGAATTTTAAAAGGX_XX_X
3._AMAZ_5_/2
AAGGAATTAAGGAATTTTAAAAGGX_XX_X
4._AMAZ_5_/2
AAGGAATTAAGGAATTTTAAAAGGX_XX_X
5._AMAZ_5_/2
AAGGAATTAAGGAATTTTAAAAGGX_XX_X
6._GC-03-008-1-08
AAGGAATTAAGGAATTTTAAAAGGX_XX_X
7._GC-03-008-1-08
AAGGAATTAAGGAATTTTAAAAGGX_XX_X
8._GC-03-008-1-08
AAGGAATTAAGGAATTTTAAAAGGX_XX_X
9._GC-03-008-1-08
AAGGAATTAAGGAATTTTAAAAGGX_XX_X
10._RUQ_93
AAGGAATTAAGGAATTTTAAAAGGX_XX_X
11._RUQ_93
AA__AATTAAGGAATTTTAA____X_XX_X

Input profile: AMAZ_5_/2

 
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A A20 T1
 Dapeng Zhang, 2016

1._AMAZ_5_/2 RUQ_93

50 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

2._AMAZ_5_/2

50 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3108 9 > FP
 Dapeng Zhang, 2016

3._AMAZ_5_/2

50 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3108 8 > FP
 Dapeng Zhang, 2016

4._AMAZ_5_/2

50 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3108 5
 Dapeng Zhang, 2016

5._AMAZ_5_/2

50 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3108 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

6._AMAZ_5_/2 GC-03-008-1-08

50 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

7._AMAZ_5_/2 GC-03-008-1-08

50 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

8._AMAZ_5_/2 GC-03-008-1-08

50 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8 > FP3
 Mars, 2018

9._AMAZ_5_/2 GC-03-008-1-08

50 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

10._AMAZ_5_/2 RUQ_93

48.8 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

11._AMAZ_5_/2 RUQ_93

41.7 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25