SNP Profiles of BE-10   View Data

 Show/Hide Profiles

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
TTAAGGCCTTAACCTTCCTTAAAACCGG
1._BE_10___
TTAAGGCCTTAACCTTCCTTAAAACCGG
2._BE_10___
TTAAGGCCTTAACCTTCCTTAAAACCGG
3._BE_10___
TTAAGGCCTTAACCTTCCTTAAAACCGG
4._BE_10___
TTAAGGCCTTAACCTTCCTTAAAACCGG
5._BE_10___
TTAAGGCCTTAACCTTCCTTAAAACCGG
6._BE_10___
TTAAGGCCTTAACCTTCCTTAAAACCGG
7._BE_10___
TTAAGGCCTTAACCTTCCTTAAAACCGG
8._BE_10___
TTAAGGCCTTAACCTTCCTTAAAACCGG
9._BE_10___
TTAAGGCCTTAACCTTCCTTAAAACCGG
10._BE_10___
TTAAGGCCTTAACCTTCCTTAAAACCGG
11._BE_10___
TTAAGGCCTTAACCTTCCTTAAAACCGG
12._BE_10___
TTAAGGCCTTAACCTTCCTTAAAACCGG
13._BE_10___
TTAAGGCCTTAACCTTCCTTAAAACCGG
14._BE_10___
TTAAGGCCTTAACCTTCCTTAAAACCGG
15._BE_10___
TTAAGGCCTTAACCTTCCTTAAAACCGG
16._BE_10___
TTAAGGCCTTAACCTTCCTTAAAACCGG
17._BE_10___
TTAAGGCCTTAACCTTCCTTAAAACCGG
18._BE_10___
TTAAGGCCTTAACCTTCCTTAAAACCGG
19._BE_10___
TTAAGGCCTTAACCTTCCTTAAAACCGG
20._BE_10___
TTAAGGCCTTAACC__CCTTAAAACCGG
21._BE_10___
TTAAGGCCTTAACC__CCTTAAAACCGG
22._BE_10___
TTAAGGCCTTAACCTTCCTTAAAACCGG
23._BE_10___
TTAAGGCCTTAACCTTCCTTAAAACCGG
24._BE_10___
TTAAGGCC____CCTTCCTTAAAACCGG
25._BE_10___
AAAACCGGAAAAGGAA____AAAAGGGG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
TTAAGGTTCCGGGGGGTTAACCTTTTCC
1._BE_10___
TTAAGGTTCCGGGGGGTTAACCTTTTCC
2._BE_10___
TTAAGGTTCCGGGGGGTTAACCTTTTCC
3._BE_10___
TTAAGGTTCCGGGGGGTTAACCTTTTCC
4._BE_10___
TTAAGGTTCCGGGGGGTTAACCTTTTCC
5._BE_10___
TTAAGGTTCCGGGGGGTTAACCTTTTCC
6._BE_10___
TTAAGGTTCCGGGGGGTTAACCTTTTCC
7._BE_10___
TTAAGGTTCCGGGGGGTTAACCTTTTCC
8._BE_10___
TTAAGGTTCCGGGGGGTTAACCTTTTCC
9._BE_10___
TTAAGGTTCCGGGGGGTTAACCTTTTCC
10._BE_10___
TTAAGGTTCCGGGGGGTTAACCTTTTCC
11._BE_10___
TTAAGGTTCCGGGGGGTTAACCTTTTCC
12._BE_10___
TTAAGGTTCCGGGGGGTTAACCTTTTCC
13._BE_10___
TTAAGGTTCCGGGGGGTTAACCTTTTCC
14._BE_10___
TTAAGGTTCCGGGGGGTTAACCTTTTCC
15._BE_10___
TTAAGGTTCCGGGGGGTTAACCTTTTCC
16._BE_10___
TTAAGGTTCCGGGGGGTTAACCTTTTCC
17._BE_10___
TTAAGGTTCCGGGGGGTTAACCTTTTCC
18._BE_10___
TTAAGGTTCCGGGGGGTTAACCTTTTCC
19._BE_10___
TTAAGGTTCCGGGGGGTTAACCTTTTCC
20._BE_10___
TTAAGGTTCCGGGGGGTTAACCTTTTCC
21._BE_10___
TTAAGGTTCCGGGGGGTTAACCTTTTCC
22._BE_10___
TTAAGG__CCGGGGGGTTAACCTTTTCC
23._BE_10___
TTAAGG__CCGGGGGGTTAACCTTTTCC
24._BE_10___
TTAA____CCGGGGAATTAACCTTTT__
25._BE_10___
AAAAGGAAGGCCCC__AAAACCAA__CC
 29 30 31 32 33 34 35 36 37 38 39 40   
_Input profile
AAGGAACCAACCAACCTTCCTTGGX_XX_X
1._BE_10___
AAGGAACCAACCAACCTTCCTTGGX_XX_X
2._BE_10___
AAGGAACCAACCAACCTTCCTTGGX_XX_X
3._BE_10___
AAGGAACCAACCAACCTTCCTTGGX_XX_X
4._BE_10___
AAGGAACCAACCAACCTTCCTTGGX_XX_X
5._BE_10___
AAGGAACCAACCAACCTTCCTTGGX_XX_X
6._BE_10___
AAGGAACCAACCAACCTTCCTTGGX_XX_X
7._BE_10___
AAGGAACCAACCAACCTTCCTTGGX_XX_X
8._BE_10___
AAGGAACCAACCAACCTTCCTTGGX_XX_X
9._BE_10___
AAGGAACCAACCAACCTTCCTTGGX_XX_X
10._BE_10___
AAGGAACCAACCAACCTTCCTTGGX_XX_X
11._BE_10___
AAGGAACCAACCAACCTTCCTTGGX_XX_X
12._BE_10___
AAGGAACCAACCAACCTTCCTTGGX_XX_X
13._BE_10___
AAGGAACCAACCAACCTTCCTTGGX_XX_X
14._BE_10___
AAGGAACCAACCAACCTTCCTTGGX_XX_X
15._BE_10___
AAGGAACCAACCAACCTTCCTTGGX_XX_X
16._BE_10___
AAGGAACCAACCAACCTTCCTTGGX_XX_X
17._BE_10___
AAGGAACCAACCAACCTTCCTTGGX_XX_X
18._BE_10___
AAGGAACCAACCAACCTTCCTTGGX_XX_X
19._BE_10___
AAGGAACCAACCAACCTTCCTTGGX_XX_X
20._BE_10___
AAGGAACCAACCAACCTTCCTTGGX_XX_X
21._BE_10___
AAGGAACCAACCAACCTTCCTTGGX_XX_X
22._BE_10___
AAGGAACCAACCAA__TTCCTTGGX_XX_X
23._BE_10___
AAGGAACCAACCAA__TTCCTTGGX_XX_X
24._BE_10___
AAGGAA__AACCAACCTTCCTTGGX_XX_X
25._BE_10___
__GGAAGGAAGGAAGGAACCTTGGX_XX_X

Input profile: BE_10

 
Mars Center for Cocoa Science, Brazil
Location: 8213 13
 Dapeng Zhang, 2016

1._BE_10

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 5
 Dapeng Zhang, 2016

2._BE_10 GC-08-090-2-13

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

3._BE_10 GC-08-090-2-13

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

4._BE_10 GC-08-090-2-13

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

5._BE_10 GC-08-090-2-13

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

6._BE_10 GC-08-090-2-13

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

7._BE_10 GC-08-090-2-13

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

8._BE_10 GC-08-090-2-13

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

9._BE_10 GC-08-090-2-13

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

10._BE_10 GC-08-090-2-13

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

11._BE_10 GC-08-090-2-13

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

12._BE_10

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 6
 Dapeng Zhang, 2016

13._BE_10

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 7
 Dapeng Zhang, 2016

14._BE_10

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 8
 Dapeng Zhang, 2016

15._BE_10

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 9
 Dapeng Zhang, 2016

16._BE_10

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 11
 Dapeng Zhang, 2016

17._BE_10

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 14
 Dapeng Zhang, 2016

18._BE_10

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 1 > FP
 Dapeng Zhang, 2016

19._BE_10

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 4 > FP
 Dapeng Zhang, 2016

20._BE_10 GC-08-090-2-13

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

21._BE_10

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 2 > FP
 Dapeng Zhang, 2016

22._BE_10 GC-08-090-2-13

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

23._BE_10

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 3 > FP
 Dapeng Zhang, 2016

24._BE_10

97.1 %
34 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A N3/467 T1
 Dapeng Zhang, 2016

25._BE_10 GC-08-90-2-13

48.6 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: Nursery, Block: -, Rep: -, Tree: 5
Notes: MCCS_Structure_refs_above_0.9membership - Sample
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25