SNP Profiles of JA 9 /37 [POU]   View Data

 Show/Hide Profiles

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
TTAAGGCCTTAACCCCTTAAAACCGGTT
1._BE_10___
TTAAGGCCTTAACCCCTTAAAACCGGTT
2._BE_10___
TTAAGGCCTTAACCCCTTAAAACCGGTT
3._BE_10___
TTAAGGCCTTAACCCCTTAAAACCGGTT
4._BE_10___
TTAAGGCCTTAACCCCTTAAAACCGGTT
5._BE_10___
TTAAGGCCTTAACCCCTTAAAACCGGTT
6._BE_10___
TTAAGGCCTTAACCCCTTAAAACCGGTT
7._BE_10___
TTAAGGCCTTAACCCCTTAAAACCGGTT
8._BE_10___
TTAAGGCCTTAACCCCTTAAAACCGGTT
9._BE_10___
TTAAGGCCTTAACCCCTTAAAACCGGTT
10._BE_10___
TTAAGGCCTTAACCCCTTAAAACCGGTT
11._BE_10___
TTAAGGCCTTAACCCCTTAAAACCGGTT
12._BE_10___
TTAAGGCCTTAACCCCTTAAAACCGGTT
13._BE_10___
TTAAGGCCTTAACCCCTTAAAACCGGTT
14._BE_10___
TTAAGGCCTTAACCCCTTAAAACCGGTT
15._BE_10___
TTAAGGCCTTAACCCCTTAAAACCGGTT
16._BE_10___
TTAAGGCCTTAACCCCTTAAAACCGGTT
17._BE_10___
TTAAGGCCTTAACCCCTTAAAACCGGTT
18._BE_10___
TTAAGGCCTTAACCCCTTAAAACCGGTT
19._BE_10___
TTAAGGCCTTAACCCCTTAAAACCGGTT
20._BE_10___
TTAAGGCCTTAACCCCTTAAAACCGGTT
21._BE_10___
TTAAGGCCTTAACCCCTTAAAACCGGTT
22._BE_10___
TTAAGGCCTTAACCCCTTAAAACCGGTT
23._BE_10___
TTAAGGCCTTAACCCCTTAAAACCGGTT
24._BE_10___
TTAAGGCC____CCCCTTAAAACCGGTT
25._BE_10___
AAAACCGGAAAAGG____AAAAGGGGAA
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAGGTTCCGGGGGGTTAACCTTTTCCAA
1._BE_10___
AAGGTTCCGGGGGGTTAACCTTTTCCAA
2._BE_10___
AAGGTTCCGGGGGGTTAACCTTTTCCAA
3._BE_10___
AAGGTTCCGGGGGGTTAACCTTTTCCAA
4._BE_10___
AAGGTTCCGGGGGGTTAACCTTTTCCAA
5._BE_10___
AAGGTTCCGGGGGGTTAACCTTTTCCAA
6._BE_10___
AAGGTTCCGGGGGGTTAACCTTTTCCAA
7._BE_10___
AAGGTTCCGGGGGGTTAACCTTTTCCAA
8._BE_10___
AAGGTTCCGGGGGGTTAACCTTTTCCAA
9._BE_10___
AAGGTTCCGGGGGGTTAACCTTTTCCAA
10._BE_10___
AAGGTTCCGGGGGGTTAACCTTTTCCAA
11._BE_10___
AAGGTTCCGGGGGGTTAACCTTTTCCAA
12._BE_10___
AAGGTTCCGGGGGGTTAACCTTTTCCAA
13._BE_10___
AAGGTTCCGGGGGGTTAACCTTTTCCAA
14._BE_10___
AAGGTTCCGGGGGGTTAACCTTTTCCAA
15._BE_10___
AAGGTTCCGGGGGGTTAACCTTTTCCAA
16._BE_10___
AAGGTTCCGGGGGGTTAACCTTTTCCAA
17._BE_10___
AAGGTTCCGGGGGGTTAACCTTTTCCAA
18._BE_10___
AAGGTTCCGGGGGGTTAACCTTTTCCAA
19._BE_10___
AAGGTTCCGGGGGGTTAACCTTTTCCAA
20._BE_10___
AAGGTTCCGGGGGGTTAACCTTTTCCAA
21._BE_10___
AAGGTTCCGGGGGGTTAACCTTTTCCAA
22._BE_10___
AAGG__CCGGGGGGTTAACCTTTTCCAA
23._BE_10___
AAGG__CCGGGGGGTTAACCTTTTCCAA
24._BE_10___
AA____CCGGGGAATTAACCTTTT__AA
25._BE_10___
AAGGAAGGCCCC__AAAACCAA__CC__
 29 30 31 32 33 34 35 36 37 38 39    
_Input profile
GGAACCAACCAACCTTCCTTGGX_XX_XX_X
1._BE_10___
GGAACCAACCAACCTTCCTTGGX_XX_XX_X
2._BE_10___
GGAACCAACCAACCTTCCTTGGX_XX_XX_X
3._BE_10___
GGAACCAACCAACCTTCCTTGGX_XX_XX_X
4._BE_10___
GGAACCAACCAACCTTCCTTGGX_XX_XX_X
5._BE_10___
GGAACCAACCAACCTTCCTTGGX_XX_XX_X
6._BE_10___
GGAACCAACCAACCTTCCTTGGX_XX_XX_X
7._BE_10___
GGAACCAACCAACCTTCCTTGGX_XX_XX_X
8._BE_10___
GGAACCAACCAACCTTCCTTGGX_XX_XX_X
9._BE_10___
GGAACCAACCAACCTTCCTTGGX_XX_XX_X
10._BE_10___
GGAACCAACCAACCTTCCTTGGX_XX_XX_X
11._BE_10___
GGAACCAACCAACCTTCCTTGGX_XX_XX_X
12._BE_10___
GGAACCAACCAACCTTCCTTGGX_XX_XX_X
13._BE_10___
GGAACCAACCAACCTTCCTTGGX_XX_XX_X
14._BE_10___
GGAACCAACCAACCTTCCTTGGX_XX_XX_X
15._BE_10___
GGAACCAACCAACCTTCCTTGGX_XX_XX_X
16._BE_10___
GGAACCAACCAACCTTCCTTGGX_XX_XX_X
17._BE_10___
GGAACCAACCAACCTTCCTTGGX_XX_XX_X
18._BE_10___
GGAACCAACCAACCTTCCTTGGX_XX_XX_X
19._BE_10___
GGAACCAACCAACCTTCCTTGGX_XX_XX_X
20._BE_10___
GGAACCAACCAACCTTCCTTGGX_XX_XX_X
21._BE_10___
GGAACCAACCAACCTTCCTTGGX_XX_XX_X
22._BE_10___
GGAACCAACCAA__TTCCTTGGX_XX_XX_X
23._BE_10___
GGAACCAACCAA__TTCCTTGGX_XX_XX_X
24._BE_10___
GGAA__AACCAACCTTCCTTGGX_XX_XX_X
25._BE_10___
GGAAGGAAGGAAGGAACCTTGGX_XX_XX_X

Input profile: BE_10

 
Mars Center for Cocoa Science, Brazil
Location: 8213 2 > FP
 Dapeng Zhang, 2016

1._BE_10

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 5
 Dapeng Zhang, 2016

2._BE_10 GC-08-090-2-13

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

3._BE_10 GC-08-090-2-13

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

4._BE_10 GC-08-090-2-13

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

5._BE_10 GC-08-090-2-13

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

6._BE_10 GC-08-090-2-13

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

7._BE_10 GC-08-090-2-13

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

8._BE_10 GC-08-090-2-13

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

9._BE_10 GC-08-090-2-13

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

10._BE_10 GC-08-090-2-13

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

11._BE_10 GC-08-090-2-13

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

12._BE_10 GC-08-090-2-13

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

13._BE_10

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 6
 Dapeng Zhang, 2016

14._BE_10

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 7
 Dapeng Zhang, 2016

15._BE_10

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 8
 Dapeng Zhang, 2016

16._BE_10

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 9
 Dapeng Zhang, 2016

17._BE_10

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 11
 Dapeng Zhang, 2016

18._BE_10

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 13
 Dapeng Zhang, 2016

19._BE_10

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 14
 Dapeng Zhang, 2016

20._BE_10

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 1 > FP
 Dapeng Zhang, 2016

21._BE_10

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 4 > FP
 Dapeng Zhang, 2016

22._BE_10 GC-08-090-2-13

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

23._BE_10

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 3 > FP
 Dapeng Zhang, 2016

24._BE_10

97 %
33 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A N3/467 T1
 Dapeng Zhang, 2016

25._BE_10 GC-08-90-2-13

50 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: Nursery, Block: -, Rep: -, Tree: 5
Notes: MCCS_Structure_refs_above_0.9membership - Sample
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1165 9TcSNP1144 10TcSNP1075
11TcSNP1062 12TcSNP1060 13TcSNP998 14TcSNP994 15TcSNP953
16TcSNP929 17TcSNP917 18TcSNP891 19TcSNP872 20TcSNP723
21TcSNP645 22TcSNP619 23TcSNP591 24TcSNP577 25TcSNP560
26TcSNP534 27TcSNP529 28TcSNP469 29TcSNP429 30TcSNP372
31TcSNP242 32TcSNP230 33TcSNP226 34TcSNP193 35TcSNP151
36TcSNP150 37TcSNP144 38TcSNP32 39TcSNP25