SNP Profiles of SIAL 70   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
TTAAGGCCTTAACCTTCCTTAAAACCGG
1._BE_10___
TTAAGGCCTTAACCTTCCTTAAAACCGG
2._BE_10___
TTAAGGCCTTAACCTTCCTTAAAACCGG
3._BE_10___
TTAAGGCCTTAACCTTCCTTAAAACCGG
4._BE_10___
TTAAGGCCTTAACCTTCCTTAAAACCGG
5._BE_10___
TTAAGGCCTTAACCTTCCTTAAAACCGG
6._BE_10___
TTAAGGCCTTAACCTTCCTTAAAACCGG
7._BE_10___
TTAAGGCCTTAACCTTCCTTAAAACCGG
8._BE_10___
TTAAGGCCTTAACCTTCCTTAAAACCGG
9._BE_10___
TTAAGGCCTTAACCTTCCTTAAAACCGG
10._BE_10___
TTAAGGCCTTAACCTTCCTTAAAACCGG
11._BE_10___
TTAAGGCCTTAACCTTCCTTAAAACCGG
12._BE_10___
TTAAGGCCTTAACCTTCCTTAAAACCGG
13._BE_10___
TTAAGGCCTTAACCTTCCTTAAAACCGG
14._BE_10___
TTAAGGCCTTAACCTTCCTTAAAACCGG
15._BE_10___
TTAAGGCCTTAACCTTCCTTAAAACCGG
16._BE_10___
TTAAGGCCTTAACCTTCCTTAAAACCGG
17._BE_10___
TTAAGGCCTTAACCTTCCTTAAAACCGG
18._BE_10___
TTAAGGCCTTAACCTTCCTTAAAACCGG
19._BE_10___
TTAAGGCCTTAACCTTCCTTAAAACCGG
20._BE_10___
TTAAGGCCTTAACCTTCCTTAAAACCGG
21._BE_10___
TTAAGGCCTTAACCTTCCTTAAAACCGG
22._BE_10___
TTAAGGCCTTAACC__CCTTAAAACCGG
23._BE_10___
TTAAGGCCTTAACC__CCTTAAAACCGG
24._BE_10___
TTAAGGCC____CCTTCCTTAAAACCGG
25._BE_10___
AAAACCGGAAAAGGAA____AAAAGGGG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
TTAAGGCCGGGGGGTTAACCTTTTCCAA
1._BE_10___
TTAAGGCCGGGGGGTTAACCTTTTCCAA
2._BE_10___
TTAAGGCCGGGGGGTTAACCTTTTCCAA
3._BE_10___
TTAAGGCCGGGGGGTTAACCTTTTCCAA
4._BE_10___
TTAAGGCCGGGGGGTTAACCTTTTCCAA
5._BE_10___
TTAAGGCCGGGGGGTTAACCTTTTCCAA
6._BE_10___
TTAAGGCCGGGGGGTTAACCTTTTCCAA
7._BE_10___
TTAAGGCCGGGGGGTTAACCTTTTCCAA
8._BE_10___
TTAAGGCCGGGGGGTTAACCTTTTCCAA
9._BE_10___
TTAAGGCCGGGGGGTTAACCTTTTCCAA
10._BE_10___
TTAAGGCCGGGGGGTTAACCTTTTCCAA
11._BE_10___
TTAAGGCCGGGGGGTTAACCTTTTCCAA
12._BE_10___
TTAAGGCCGGGGGGTTAACCTTTTCCAA
13._BE_10___
TTAAGGCCGGGGGGTTAACCTTTTCCAA
14._BE_10___
TTAAGGCCGGGGGGTTAACCTTTTCCAA
15._BE_10___
TTAAGGCCGGGGGGTTAACCTTTTCCAA
16._BE_10___
TTAAGGCCGGGGGGTTAACCTTTTCCAA
17._BE_10___
TTAAGGCCGGGGGGTTAACCTTTTCCAA
18._BE_10___
TTAAGGCCGGGGGGTTAACCTTTTCCAA
19._BE_10___
TTAAGGCCGGGGGGTTAACCTTTTCCAA
20._BE_10___
TTAAGGCCGGGGGGTTAACCTTTTCCAA
21._BE_10___
TTAAGGCCGGGGGGTTAACCTTTTCCAA
22._BE_10___
TTAAGGCCGGGGGGTTAACCTTTTCCAA
23._BE_10___
TTAAGGCCGGGGGGTTAACCTTTTCCAA
24._BE_10___
TTAA__CCGGGGAATTAACCTTTT__AA
25._BE_10___
AAAAGGGGCCCC__AAAACCAA__CC__
 29 30 31 32 33 34 35 36 37 38     
_Input profile
GGAACCAACCAATTCCTTGGX_XX_XX_XX_X
1._BE_10___
GGAACCAACCAATTCCTTGGX_XX_XX_XX_X
2._BE_10___
GGAACCAACCAATTCCTTGGX_XX_XX_XX_X
3._BE_10___
GGAACCAACCAATTCCTTGGX_XX_XX_XX_X
4._BE_10___
GGAACCAACCAATTCCTTGGX_XX_XX_XX_X
5._BE_10___
GGAACCAACCAATTCCTTGGX_XX_XX_XX_X
6._BE_10___
GGAACCAACCAATTCCTTGGX_XX_XX_XX_X
7._BE_10___
GGAACCAACCAATTCCTTGGX_XX_XX_XX_X
8._BE_10___
GGAACCAACCAATTCCTTGGX_XX_XX_XX_X
9._BE_10___
GGAACCAACCAATTCCTTGGX_XX_XX_XX_X
10._BE_10___
GGAACCAACCAATTCCTTGGX_XX_XX_XX_X
11._BE_10___
GGAACCAACCAATTCCTTGGX_XX_XX_XX_X
12._BE_10___
GGAACCAACCAATTCCTTGGX_XX_XX_XX_X
13._BE_10___
GGAACCAACCAATTCCTTGGX_XX_XX_XX_X
14._BE_10___
GGAACCAACCAATTCCTTGGX_XX_XX_XX_X
15._BE_10___
GGAACCAACCAATTCCTTGGX_XX_XX_XX_X
16._BE_10___
GGAACCAACCAATTCCTTGGX_XX_XX_XX_X
17._BE_10___
GGAACCAACCAATTCCTTGGX_XX_XX_XX_X
18._BE_10___
GGAACCAACCAATTCCTTGGX_XX_XX_XX_X
19._BE_10___
GGAACCAACCAATTCCTTGGX_XX_XX_XX_X
20._BE_10___
GGAACCAACCAATTCCTTGGX_XX_XX_XX_X
21._BE_10___
GGAACCAACCAATTCCTTGGX_XX_XX_XX_X
22._BE_10___
GGAACCAACCAATTCCTTGGX_XX_XX_XX_X
23._BE_10___
GGAACCAACCAATTCCTTGGX_XX_XX_XX_X
24._BE_10___
GGAA__AACCAATTCCTTGGX_XX_XX_XX_X
25._BE_10___
GGAAGGAAGGAAAACCTTGGX_XX_XX_XX_X

Input profile: BE_10

 
Mars Center for Cocoa Science, Brazil
Location: 8213 3 > FP
 Dapeng Zhang, 2016

1._BE_10

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 5
 Dapeng Zhang, 2016

2._BE_10 GC-08-090-2-13

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

3._BE_10 GC-08-090-2-13

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

4._BE_10 GC-08-090-2-13

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

5._BE_10 GC-08-090-2-13

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

6._BE_10 GC-08-090-2-13

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

7._BE_10 GC-08-090-2-13

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

8._BE_10 GC-08-090-2-13

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

9._BE_10 GC-08-090-2-13

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

10._BE_10 GC-08-090-2-13

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

11._BE_10 GC-08-090-2-13

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

12._BE_10 GC-08-090-2-13

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

13._BE_10

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 6
 Dapeng Zhang, 2016

14._BE_10

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 7
 Dapeng Zhang, 2016

15._BE_10

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 8
 Dapeng Zhang, 2016

16._BE_10

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 9
 Dapeng Zhang, 2016

17._BE_10

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 11
 Dapeng Zhang, 2016

18._BE_10

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 13
 Dapeng Zhang, 2016

19._BE_10

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 14
 Dapeng Zhang, 2016

20._BE_10

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 1 > FP
 Dapeng Zhang, 2016

21._BE_10

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 4 > FP
 Dapeng Zhang, 2016

22._BE_10 GC-08-090-2-13

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

23._BE_10

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 2 > FP
 Dapeng Zhang, 2016

24._BE_10

97 %
33 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A N3/467 T1
 Dapeng Zhang, 2016

25._BE_10 GC-08-90-2-13

51.5 %
33 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: Nursery, Block: -, Rep: -, Tree: 5
Notes: MCCS_Structure_refs_above_0.9membership - Sample
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP891 19TcSNP872 20TcSNP723
21TcSNP645 22TcSNP619 23TcSNP591 24TcSNP577 25TcSNP560
26TcSNP534 27TcSNP529 28TcSNP469 29TcSNP429 30TcSNP372
31TcSNP242 32TcSNP230 33TcSNP226 34TcSNP193 35TcSNP150
36TcSNP144 37TcSNP32 38TcSNP25