SNP Profiles of CCN-51   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CTAGGGTTTTACCTTTCCCTAAAGCTAA
1._CCN_51___
CTAGGGTTTTACCTTTCCCTAAAGCTAA
2._CCN_51___
CTAGGGTTTTACCTTTCCCTAAAGCTAA
3._CCN_51___
CTAGGGTTTTACCTTTCCCTAAAGCTAA
4._CCN_51___
CTAGGGTTTTACCTTTCCCTAAAGCTAA
5._CCN_51___
CTAGGGTTTTACCTTTCCCTAAAGCTAA
6._CCN_51___
CTAGGGTTTTACCTTTCCCTAAAGCTAA
7._CCN_51___
CTAGGGTTTTACCTTTCCCTAAAGCTAA
8._CCN_51___
CTAGGGTTTTACCTTTCCCTAAAGCTAA
9._CCN_51___
CTAGGGTTTTACCTTTCCCTAAAGCTAA
10._CCN_51___
CTAGGGTTTTACCTTTCCCTAAAGCTAA
11._CCN_51___
CTAGGGTTTTACCTTTCCCTAAAGCTAA
12._CCN_51___
CTAGGGTTTTACCTTTCCCTAAAGCTAA
13._CCN_51___
CTAGGGTTTTACCTTTCCCTAAAGCTAA
14._CCN_51___
CTAGGGTTTTACCTTTCCCTAA__CTAA
15._CCN_51___
CTAGGGTTTTACCTTTCCCTAA__CTAA
16._CCN_51___
____GG________TT__CT__AG__AA
17._CCN_51___
CTAGGGTTTTACCTTTCCCTAAAGCTAA
18._CCN_51___
CTAGGGTTTTACCTTTCCCTAAAGCTAA
19._CCN_51___
____GG________TT__CT__AG__AA
20._CCN_51___
____GG________TT__CT__AG__AA
21._CCN_51___
____GG________TT__CT__AG__AA
22._CCN_51___
AGAGCCAAAAACAGAA____AAAGAGAA
23._CCN_51___
AGAGCCAAAAACAGAA____AAAGAGAA
24._CCN_51___
AGAGCCAAAAACAGAA____AAAGAGAA
25._CCN_51___
CCGGCCTTTTAACCGGTTCCAAAATTAA
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
TTAAGGCTCCCCGGAGCTCCCCTTCTAC
1._CCN_51___
TTAAGGCTCCCCGGAGCTCCCCTTCTAC
2._CCN_51___
TTAAGGCTCCCCGGAGCTCCCCTTCTAC
3._CCN_51___
TTAAGGCTCCCCGGAGCTCCCCTTCTAC
4._CCN_51___
TTAAGGCTCCCCGGAGCTCCCCTTCTAC
5._CCN_51___
TTAAGGCTCCCCGGAGCTCCCCTTCTAC
6._CCN_51___
TTAAGGCTCCCCGGAGCTCCCCTTCTAC
7._CCN_51___
TTAAGGCTCCCCGGAGCTCCCCTTCTAC
8._CCN_51___
TTAAGGCTCCCCGGAGCTCCCCTTCTAC
9._CCN_51___
TTAAGGCTCCCCGGAGCTCCCCTTCTAC
10._CCN_51___
TTAAGGCTCCCCGGAGCTCCCCTTCTAC
11._CCN_51___
TTAA__CTCCCCGGAGCTCCCCTTCTAC
12._CCN_51___
TTAAGGCTCCCCGGAGCTCCCCTTCTAC
13._CCN_51___
TTAA__CTCCCCGGAGCTCCCCTTCTAC
14._CCN_51___
TTAAGGCTCC__GGAGCT__CCTTCTAC
15._CCN_51___
TTAAGGCTCC__GGAGCT__CCTTCTAC
16._CCN_51___
__________CCGGAG__CCCC______
17._CCN_51___
CTAAGGCTCCCCGGAGCTCCCCTTCTAC
18._CCN_51___
CTAAGGCTCCCCGGAGCTCCCCTTCTAC
19._CCN_51___
__________CCGGAG__CCCC____AA
20._CCN_51___
__________CCGGAG__CCCC____AA
21._CCN_51___
__________CCGGAG__CCCC____AA
22._CCN_51___
AAAAGGAGGGGGCC__AGCCCCAA__AC
23._CCN_51___
AAAAGGAGGGGGCC__AGCCCCAA__AC
24._CCN_51___
AAAAGGAGGGGGCC__AGCCCCAA__AC
25._CCN_51___
CCAAGGTTCCCCTTGGCCCCCCGGCCCC
 29 30 31 32 33 34 35 36 37 38 39 40   
_Input profile
AGGGAACTAACGAACCTTACTTGGX_XX_X
1._CCN_51___
AGGGAACTAACGAACCTTACTTGGX_XX_X
2._CCN_51___
AGGGAACTAACGAACCTTACTTGGX_XX_X
3._CCN_51___
AGGGAACTAACGAACCTTACTTGGX_XX_X
4._CCN_51___
AGGGAACTAACGAACCTTACTTGGX_XX_X
5._CCN_51___
AGGGAACTAACGAACCTTACTTGGX_XX_X
6._CCN_51___
AGGGAACTAACGAACCTTACTTGGX_XX_X
7._CCN_51___
AGGGAACTAACGAACCTTACTTGGX_XX_X
8._CCN_51___
AGGGAACTAACGAACCTTACTTGGX_XX_X
9._CCN_51___
AGGGAACTAACGAACCTTACTTGGX_XX_X
10._CCN_51___
AGGGAACTAACGAACCTTACTTGGX_XX_X
11._CCN_51___
AGGGAACTAACGAACCTTACTTGGX_XX_X
12._CCN_51___
AGGGAACTAA__AACCTTACTTGGX_XX_X
13._CCN_51___
AGGGAACTAACGAACCTTACTTGGX_XX_X
14._CCN_51___
AGGGAACTAACGAACCTTACTTGGX_XX_X
15._CCN_51___
AGGGAACTAACGAACCTTACTTGGX_XX_X
16._CCN_51___
________AA________AC____X_XX_X
17._CCN_51___
AGGGAACTAACGAACCTTACTTGGX_XX_X
18._CCN_51___
AGGGAACTAACGAACCTTACTTGGX_XX_X
19._CCN_51___
________AA________AC____X_XX_X
20._CCN_51___
________AA________AC____X_XX_X
21._CCN_51___
________AA________AC____X_XX_X
22._CCN_51___
__GGAAAGAACGAAGGAAACTTGGX_XX_X
23._CCN_51___
__GGAAAGAACGAAGGAAACTTGGX_XX_X
24._CCN_51___
__GGAAAGAACGAAGGAAACTTGGX_XX_X
25._CCN_51___
GGGGTTTTGGGGCCTTGGAAAAGGX_XX_X

Input profile: CCN_51

 
Mars Center for Cocoa Science, Brazil
Location: 7121 13
 Dapeng Zhang, 2016

1._CCN_51 GC-07-019-1-21

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
 Mars, 2018

2._CCN_51

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7121 3 > FP
 Dapeng Zhang, 2016

3._CCN_51

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7121 14
 Dapeng Zhang, 2016

4._CCN_51

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7121 12
 Dapeng Zhang, 2016

5._CCN_51

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7121 10
 Dapeng Zhang, 2016

6._CCN_51 GC-07-019-1-21

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
 Mars, 2018

7._CCN_51 GC-07-019-1-21

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
 Mars, 2018

8._CCN_51 GC-07-019-1-21

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
 Mars, 2018

9._CCN_51 GC-07-019-1-21

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 7, Block: 1, Rep: 21, Tree: PL3
Notes: PL3 FP1
 Mars, 2018

10._CCN_51

identical
40 shared markers

Estation Experimental Tropical Pichilingue, Ecuador
 Dapeng Zhang, 2016

11._CCN_51

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7121 4 > FP
 Dapeng Zhang, 2016

12._CCN_51 GC-06-4-1-04

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 6, Block: 1, Rep: 4, Tree: PL7
Notes: PL7 FP
 Mars, 2018

13._CCN_51 GC-07-019-1-21

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 7, Block: 1, Rep: 21, Tree: PL4
Notes: PL4 FP2
 Mars, 2018

14._CCN_51

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7121 6 > FP
 Dapeng Zhang, 2016

15._CCN_51 GC-07-019-1-21

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 7, Block: 1, Rep: 21, Tree: PL6
Notes: PL6 FP4
 Mars, 2018

16._CCN_51 RUQ_1737B

identical
12 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

17._CCN_51

98.8 %
40 shared markers

 Dapeng Zhang, 2016

18._CCN_51

98.8 %
40 shared markers

 Dapeng Zhang, 2016

19._CCN_51 RUQ_1736

96.2 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

20._CCN_51 RUQ_1737

96.2 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

21._CCN_51 RUQ_1737C

96.2 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

22._CCN_51 GC-07-19-1-21

51.4 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 7, Block: 1, Rep: 21, Tree: 3 > FP1
 Mars, 2018

23._CCN_51 RUQ_1736

51.4 %
35 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Mars, 2018

24._CCN_51 MITC-000000

51.4 %
35 shared markers

USDA-SHRS, United States of America
 Mars, 2018

25._CCN_51

50 %
40 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25