SNP Profiles of CCN 51 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CT	AG	GG	TT	TT	AC	CT	TT	CC	CT	AA	AG	CT	AA
1._GC-07-019-1-21	CT	AG	GG	TT	TT	AC	CT	TT	CC	CT	AA	AG	CT	AA
2._CCN_51	CT	AG	GG	TT	TT	AC	CT	TT	CC	CT	AA	AG	CT	AA
3._CCN_51	CT	AG	GG	TT	TT	AC	CT	TT	CC	CT	AA	AG	CT	AA
4._CCN_51	CT	AG	GG	TT	TT	AC	CT	TT	CC	CT	AA	AG	CT	AA
5._CCN_51	CT	AG	GG	TT	TT	AC	CT	TT	CC	CT	AA	AG	CT	AA
6._CCN_51	CT	AG	GG	TT	TT	AC	CT	TT	CC	CT	AA	AG	CT	AA
7._GC-07-019-1-21	CT	AG	GG	TT	TT	AC	CT	TT	CC	CT	AA	AG	CT	AA
8._GC-07-019-1-21	CT	AG	GG	TT	TT	AC	CT	TT	CC	CT	AA	AG	CT	AA
9._GC-07-019-1-21	CT	AG	GG	TT	TT	AC	CT	TT	CC	CT	AA	AG	CT	AA
10._GC-07-019-1-21	CT	AG	GG	TT	TT	AC	CT	TT	CC	CT	AA	AG	CT	AA
11._GC-07-019-1-21	CT	AG	GG	TT	TT	AC	CT	TT	CC	CT	AA	AG	CT	AA
12._CCN_51	CT	AG	GG	TT	TT	AC	CT	TT	CC	CT	AA	AG	CT	AA
13._GC-06-4-1-04	CT	AG	GG	TT	TT	AC	CT	TT	CC	CT	AA	AG	CT	AA
14._CCN_51	CT	AG	GG	TT	TT	AC	CT	TT	CC	CT	AA	__	CT	AA
15._GC-07-019-1-21	CT	AG	GG	TT	TT	AC	CT	TT	CC	CT	AA	__	CT	AA
16._RUQ_1737B	__	__	GG	__	__	__	__	TT	__	CT	__	AG	__	AA
17._CCN_51	CT	AG	GG	TT	TT	AC	CT	TT	CC	CT	AA	AG	CT	AA
18._CCN_51	CT	AG	GG	TT	TT	AC	CT	TT	CC	CT	AA	AG	CT	AA
19._RUQ_1736	__	__	GG	__	__	__	__	TT	__	CT	__	AG	__	AA
20._RUQ_1737	__	__	GG	__	__	__	__	TT	__	CT	__	AG	__	AA
21._RUQ_1737C	__	__	GG	__	__	__	__	TT	__	CT	__	AG	__	AA
22._GC-07-19-1-21	AG	AG	CC	AA	AA	AC	AG	AA	__	__	AA	AG	AG	AA
23._RUQ_1736	AG	AG	CC	AA	AA	AC	AG	AA	__	__	AA	AG	AG	AA
24._MITC-000000	AG	AG	CC	AA	AA	AC	AG	AA	__	__	AA	AG	AG	AA
25._CCN_51	CC	GG	CC	TT	TT	AA	CC	GG	TT	CC	AA	AA	TT	AA

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	TT	AA	CT	CC	CC	GG	AG	CT	CC	CC	TT	CT	AC	AG
1._GC-07-019-1-21	TT	AA	CT	CC	CC	GG	AG	CT	CC	CC	TT	CT	AC	AG
2._CCN_51	TT	AA	CT	CC	CC	GG	AG	CT	CC	CC	TT	CT	AC	AG
3._CCN_51	TT	AA	CT	CC	CC	GG	AG	CT	CC	CC	TT	CT	AC	AG
4._CCN_51	TT	AA	CT	CC	CC	GG	AG	CT	CC	CC	TT	CT	AC	AG
5._CCN_51	TT	AA	CT	CC	CC	GG	AG	CT	CC	CC	TT	CT	AC	AG
6._CCN_51	TT	AA	CT	CC	CC	GG	AG	CT	CC	CC	TT	CT	AC	AG
7._GC-07-019-1-21	TT	AA	CT	CC	CC	GG	AG	CT	CC	CC	TT	CT	AC	AG
8._GC-07-019-1-21	TT	AA	CT	CC	CC	GG	AG	CT	CC	CC	TT	CT	AC	AG
9._GC-07-019-1-21	TT	AA	CT	CC	CC	GG	AG	CT	CC	CC	TT	CT	AC	AG
10._GC-07-019-1-21	TT	AA	CT	CC	CC	GG	AG	CT	CC	CC	TT	CT	AC	AG
11._GC-07-019-1-21	TT	AA	CT	CC	CC	GG	AG	CT	CC	CC	TT	CT	AC	AG
12._CCN_51	TT	AA	CT	CC	CC	GG	AG	CT	CC	CC	TT	CT	AC	AG
13._GC-06-4-1-04	TT	AA	CT	CC	CC	GG	AG	CT	CC	CC	TT	CT	AC	AG
14._CCN_51	TT	AA	CT	CC	__	GG	AG	CT	__	CC	TT	CT	AC	AG
15._GC-07-019-1-21	TT	AA	CT	CC	__	GG	AG	CT	__	CC	TT	CT	AC	AG
16._RUQ_1737B	__	__	__	__	CC	GG	AG	__	CC	CC	__	__	__	__
17._CCN_51	CT	AA	CT	CC	CC	GG	AG	CT	CC	CC	TT	CT	AC	AG
18._CCN_51	CT	AA	CT	CC	CC	GG	AG	CT	CC	CC	TT	CT	AC	AG
19._RUQ_1736	__	__	__	__	CC	GG	AG	__	CC	CC	__	__	AA	__
20._RUQ_1737	__	__	__	__	CC	GG	AG	__	CC	CC	__	__	AA	__
21._RUQ_1737C	__	__	__	__	CC	GG	AG	__	CC	CC	__	__	AA	__
22._GC-07-19-1-21	AA	AA	AG	GG	GG	CC	__	AG	CC	CC	AA	__	AC	__
23._RUQ_1736	AA	AA	AG	GG	GG	CC	__	AG	CC	CC	AA	__	AC	__
24._MITC-000000	AA	AA	AG	GG	GG	CC	__	AG	CC	CC	AA	__	AC	__
25._CCN_51	CC	AA	TT	CC	CC	TT	GG	CC	CC	CC	GG	CC	CC	GG

	29	30	31	32	33	34	35	36	37	38	39
_Input profile	GG	AA	CT	AA	CG	AA	CC	TT	AC	TT	GG	X_X	X_X	X_X
1._GC-07-019-1-21	GG	AA	CT	AA	CG	AA	CC	TT	AC	TT	GG	X_X	X_X	X_X
2._CCN_51	GG	AA	CT	AA	CG	AA	CC	TT	AC	TT	GG	X_X	X_X	X_X
3._CCN_51	GG	AA	CT	AA	CG	AA	CC	TT	AC	TT	GG	X_X	X_X	X_X
4._CCN_51	GG	AA	CT	AA	CG	AA	CC	TT	AC	TT	GG	X_X	X_X	X_X
5._CCN_51	GG	AA	CT	AA	CG	AA	CC	TT	AC	TT	GG	X_X	X_X	X_X
6._CCN_51	GG	AA	CT	AA	CG	AA	CC	TT	AC	TT	GG	X_X	X_X	X_X
7._GC-07-019-1-21	GG	AA	CT	AA	CG	AA	CC	TT	AC	TT	GG	X_X	X_X	X_X
8._GC-07-019-1-21	GG	AA	CT	AA	CG	AA	CC	TT	AC	TT	GG	X_X	X_X	X_X
9._GC-07-019-1-21	GG	AA	CT	AA	CG	AA	CC	TT	AC	TT	GG	X_X	X_X	X_X
10._GC-07-019-1-21	GG	AA	CT	AA	CG	AA	CC	TT	AC	TT	GG	X_X	X_X	X_X
11._GC-07-019-1-21	GG	AA	CT	AA	CG	AA	CC	TT	AC	TT	GG	X_X	X_X	X_X
12._CCN_51	GG	AA	CT	AA	CG	AA	CC	TT	AC	TT	GG	X_X	X_X	X_X
13._GC-06-4-1-04	GG	AA	CT	AA	__	AA	CC	TT	AC	TT	GG	X_X	X_X	X_X
14._CCN_51	GG	AA	CT	AA	CG	AA	CC	TT	AC	TT	GG	X_X	X_X	X_X
15._GC-07-019-1-21	GG	AA	CT	AA	CG	AA	CC	TT	AC	TT	GG	X_X	X_X	X_X
16._RUQ_1737B	__	__	__	AA	__	__	__	__	AC	__	__	X_X	X_X	X_X
17._CCN_51	GG	AA	CT	AA	CG	AA	CC	TT	AC	TT	GG	X_X	X_X	X_X
18._CCN_51	GG	AA	CT	AA	CG	AA	CC	TT	AC	TT	GG	X_X	X_X	X_X
19._RUQ_1736	__	__	__	AA	__	__	__	__	AC	__	__	X_X	X_X	X_X
20._RUQ_1737	__	__	__	AA	__	__	__	__	AC	__	__	X_X	X_X	X_X
21._RUQ_1737C	__	__	__	AA	__	__	__	__	AC	__	__	X_X	X_X	X_X
22._GC-07-19-1-21	GG	AA	AG	AA	CG	AA	GG	AA	AC	TT	GG	X_X	X_X	X_X
23._RUQ_1736	GG	AA	AG	AA	CG	AA	GG	AA	AC	TT	GG	X_X	X_X	X_X
24._MITC-000000	GG	AA	AG	AA	CG	AA	GG	AA	AC	TT	GG	X_X	X_X	X_X
25._CCN_51	GG	TT	TT	GG	GG	CC	TT	GG	AA	AA	GG	X_X	X_X	X_X

Input profile: CCN_51

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 7121 4 > FP

Dapeng Zhang, 2016

1._CCN_51 GC-07-019-1-21

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 13

2._CCN_51

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 7121 3 > FP

Dapeng Zhang, 2016

3._CCN_51

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 7121 14

Dapeng Zhang, 2016

4._CCN_51

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 7121 13

Dapeng Zhang, 2016

5._CCN_51

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 7121 12

Dapeng Zhang, 2016

6._CCN_51

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 7121 10

Dapeng Zhang, 2016

7._CCN_51 GC-07-019-1-21

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 12

8._CCN_51 GC-07-019-1-21

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 10

9._CCN_51 GC-07-019-1-21

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 14

10._CCN_51 GC-07-019-1-21

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Field: 7, Block: 1, Rep: 21, Tree: PL3

Notes: PL3 FP1

11._CCN_51 GC-07-019-1-21

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Field: 7, Block: 1, Rep: 21, Tree: PL4

Notes: PL4 FP2

12._CCN_51

identical
39 shared markers

View View all Clone Any

Estation Experimental Tropical Pichilingue, Ecuador

Dapeng Zhang, 2016

13._CCN_51 GC-06-4-1-04

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Field: 6, Block: 1, Rep: 4, Tree: PL7

Notes: PL7 FP

14._CCN_51

identical
36 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 7121 6 > FP

Dapeng Zhang, 2016

15._CCN_51 GC-07-019-1-21

identical
36 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Field: 7, Block: 1, Rep: 21, Tree: PL6

Notes: PL6 FP4

16._CCN_51 RUQ_1737B

identical
12 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

17._CCN_51

98.7 %
39 shared markers

View View all Clone Any

USAPEN

Dapeng Zhang, 2016

18._CCN_51

98.7 %
39 shared markers

View View all Clone Any

USASPC

Dapeng Zhang, 2016

19._CCN_51 RUQ_1736

96.2 %
13 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

Ame
0.275 Cri
0.293 IMC
0.424

20._CCN_51 RUQ_1737

96.2 %
13 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

21._CCN_51 RUQ_1737C

96.2 %
13 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

22._CCN_51 GC-07-19-1-21

50 %
34 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Field: 7, Block: 1, Rep: 21, Tree: 3 > FP1

23._CCN_51 RUQ_1736

50 %
34 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

24._CCN_51 MITC-000000

50 %
34 shared markers

View View all Clone Any

USDA-SHRS, United States of America

25._CCN_51

48.7 %
39 shared markers

View View all Clone Any

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: Cabiria

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP917	18	TcSNP891	19	TcSNP872	20	TcSNP723
21	TcSNP645	22	TcSNP619	23	TcSNP591	24	TcSNP577	25	TcSNP560
26	TcSNP534	27	TcSNP529	28	TcSNP469	29	TcSNP429	30	TcSNP372
31	TcSNP242	32	TcSNP230	33	TcSNP226	34	TcSNP193	35	TcSNP151
36	TcSNP150	37	TcSNP144	38	TcSNP32	39	TcSNP25