SNP Profiles of CCN 51   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CTAGGGTTTTACCTTTCCCTAACTAATT
1._GC-07-019-1-21
CTAGGGTTTTACCTTTCCCTAACTAATT
2._CCN_51
CTAGGGTTTTACCTTTCCCTAACTAATT
3._CCN_51
CTAGGGTTTTACCTTTCCCTAACTAATT
4._CCN_51
CTAGGGTTTTACCTTTCCCTAACTAATT
5._CCN_51
CTAGGGTTTTACCTTTCCCTAACTAATT
6._CCN_51
CTAGGGTTTTACCTTTCCCTAACTAATT
7._GC-07-019-1-21
CTAGGGTTTTACCTTTCCCTAACTAATT
8._GC-07-019-1-21
CTAGGGTTTTACCTTTCCCTAACTAATT
9._GC-07-019-1-21
CTAGGGTTTTACCTTTCCCTAACTAATT
10._GC-07-019-1-21
CTAGGGTTTTACCTTTCCCTAACTAATT
11._GC-07-019-1-21
CTAGGGTTTTACCTTTCCCTAACTAATT
12._CCN_51
CTAGGGTTTTACCTTTCCCTAACTAATT
13._CCN_51
CTAGGGTTTTACCTTTCCCTAACTAATT
14._GC-06-4-1-04
CTAGGGTTTTACCTTTCCCTAACTAATT
15._GC-07-019-1-21
CTAGGGTTTTACCTTTCCCTAACTAATT
16._RUQ_1737B
____GG________TT__CT____AA__
17._CCN_51
CTAGGGTTTTACCTTTCCCTAACTAACT
18._CCN_51
CTAGGGTTTTACCTTTCCCTAACTAACT
19._RUQ_1736
____GG________TT__CT____AA__
20._RUQ_1737
____GG________TT__CT____AA__
21._RUQ_1737C
____GG________TT__CT____AA__
22._GC-07-19-1-21
AGAGCCAAAAACAGAA____AAAGAAAA
23._RUQ_1736
AGAGCCAAAAACAGAA____AAAGAAAA
24._MITC-000000
AGAGCCAAAAACAGAA____AAAGAAAA
25._CCN_51
CCGGCCTTTTAACCGGTTCCAATTAACC
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAGGCTCCGGAGCTCCTTCTACAGGGAA
1._GC-07-019-1-21
AAGGCTCCGGAGCTCCTTCTACAGGGAA
2._CCN_51
AAGGCTCCGGAGCTCCTTCTACAGGGAA
3._CCN_51
AAGGCTCCGGAGCTCCTTCTACAGGGAA
4._CCN_51
AAGGCTCCGGAGCTCCTTCTACAGGGAA
5._CCN_51
AAGGCTCCGGAGCTCCTTCTACAGGGAA
6._CCN_51
AAGGCTCCGGAGCTCCTTCTACAGGGAA
7._GC-07-019-1-21
AAGGCTCCGGAGCTCCTTCTACAGGGAA
8._GC-07-019-1-21
AAGGCTCCGGAGCTCCTTCTACAGGGAA
9._GC-07-019-1-21
AAGGCTCCGGAGCTCCTTCTACAGGGAA
10._GC-07-019-1-21
AAGGCTCCGGAGCTCCTTCTACAGGGAA
11._GC-07-019-1-21
AAGGCTCCGGAGCTCCTTCTACAGGGAA
12._CCN_51
AAGGCTCCGGAGCTCCTTCTACAGGGAA
13._CCN_51
AA__CTCCGGAGCTCCTTCTACAGGGAA
14._GC-06-4-1-04
AAGGCTCCGGAGCTCCTTCTACAGGGAA
15._GC-07-019-1-21
AA__CTCCGGAGCTCCTTCTACAGGGAA
16._RUQ_1737B
________GGAG__CC____________
17._CCN_51
AAGGCTCCGGAGCTCCTTCTACAGGGAA
18._CCN_51
AAGGCTCCGGAGCTCCTTCTACAGGGAA
19._RUQ_1736
________GGAG__CC____AA______
20._RUQ_1737
________GGAG__CC____AA______
21._RUQ_1737C
________GGAG__CC____AA______
22._GC-07-19-1-21
AAGGAGGGCC__AGCCAA__AC__GGAA
23._RUQ_1736
AAGGAGGGCC__AGCCAA__AC__GGAA
24._MITC-000000
AAGGAGGGCC__AGCCAA__AC__GGAA
25._CCN_51
AAGGTTCCTTGGCCCCGGCCCCGGGGTT
 29 30 31 32 33 34 35 36 37      
_Input profile
CTAACGAACCTTACTTGGX_XX_XX_XX_XX_X
1._GC-07-019-1-21
CTAACGAACCTTACTTGGX_XX_XX_XX_XX_X
2._CCN_51
CTAACGAACCTTACTTGGX_XX_XX_XX_XX_X
3._CCN_51
CTAACGAACCTTACTTGGX_XX_XX_XX_XX_X
4._CCN_51
CTAACGAACCTTACTTGGX_XX_XX_XX_XX_X
5._CCN_51
CTAACGAACCTTACTTGGX_XX_XX_XX_XX_X
6._CCN_51
CTAACGAACCTTACTTGGX_XX_XX_XX_XX_X
7._GC-07-019-1-21
CTAACGAACCTTACTTGGX_XX_XX_XX_XX_X
8._GC-07-019-1-21
CTAACGAACCTTACTTGGX_XX_XX_XX_XX_X
9._GC-07-019-1-21
CTAACGAACCTTACTTGGX_XX_XX_XX_XX_X
10._GC-07-019-1-21
CTAACGAACCTTACTTGGX_XX_XX_XX_XX_X
11._GC-07-019-1-21
CTAACGAACCTTACTTGGX_XX_XX_XX_XX_X
12._CCN_51
CTAACGAACCTTACTTGGX_XX_XX_XX_XX_X
13._CCN_51
CTAACGAACCTTACTTGGX_XX_XX_XX_XX_X
14._GC-06-4-1-04
CTAA__AACCTTACTTGGX_XX_XX_XX_XX_X
15._GC-07-019-1-21
CTAACGAACCTTACTTGGX_XX_XX_XX_XX_X
16._RUQ_1737B
__AA________AC____X_XX_XX_XX_XX_X
17._CCN_51
CTAACGAACCTTACTTGGX_XX_XX_XX_XX_X
18._CCN_51
CTAACGAACCTTACTTGGX_XX_XX_XX_XX_X
19._RUQ_1736
__AA________AC____X_XX_XX_XX_XX_X
20._RUQ_1737
__AA________AC____X_XX_XX_XX_XX_X
21._RUQ_1737C
__AA________AC____X_XX_XX_XX_XX_X
22._GC-07-19-1-21
AGAACGAAGGAAACTTGGX_XX_XX_XX_XX_X
23._RUQ_1736
AGAACGAAGGAAACTTGGX_XX_XX_XX_XX_X
24._MITC-000000
AGAACGAAGGAAACTTGGX_XX_XX_XX_XX_X
25._CCN_51
TTGGGGCCTTGGAAAAGGX_XX_XX_XX_XX_X

Input profile: CCN_51

 
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Mars Center for Cocoa Science, Brazil
Location: 7121 6 > FP
 Dapeng Zhang, 2016

1._CCN_51 GC-07-019-1-21

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

2._CCN_51

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 7121 3 > FP
 Dapeng Zhang, 2016

3._CCN_51

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 7121 14
 Dapeng Zhang, 2016

4._CCN_51

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 7121 13
 Dapeng Zhang, 2016

5._CCN_51

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 7121 12
 Dapeng Zhang, 2016

6._CCN_51

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 7121 10
 Dapeng Zhang, 2016

7._CCN_51 GC-07-019-1-21

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

8._CCN_51 GC-07-019-1-21

identical
37 shared markers

 Verified  View  View all  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

9._CCN_51 GC-07-019-1-21

identical
37 shared markers

 Reference  View  View all  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

10._CCN_51 GC-07-019-1-21

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 7, Block: 1, Rep: 21, Tree: PL3
Notes: PL3 FP1
 Mars, 2018

11._CCN_51 GC-07-019-1-21

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 7, Block: 1, Rep: 21, Tree: PL6
Notes: PL6 FP4
 Mars, 2018

12._CCN_51

identical
37 shared markers

 Verified  View  View all  Any
Estation Experimental Tropical Pichilingue, Ecuador
 Dapeng Zhang, 2016

13._CCN_51

identical
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 7121 4 > FP
 Dapeng Zhang, 2016

14._CCN_51 GC-06-4-1-04

identical
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 6, Block: 1, Rep: 4, Tree: PL7
Notes: PL7 FP
 Mars, 2018

15._CCN_51 GC-07-019-1-21

identical
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 7, Block: 1, Rep: 21, Tree: PL4
Notes: PL4 FP2
 Mars, 2018

16._CCN_51 RUQ_1737B

identical
9 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

17._CCN_51

98.6 %
37 shared markers

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USAPEN
 Dapeng Zhang, 2016

18._CCN_51

98.6 %
37 shared markers

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USASPC
 Dapeng Zhang, 2016

19._CCN_51 RUQ_1736

95 %
10 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 
View Data
Cri
0.293 IMC
0.424

20._CCN_51 RUQ_1737

95 %
10 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

21._CCN_51 RUQ_1737C

95 %
10 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

22._CCN_51 GC-07-19-1-21

50 %
32 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 7, Block: 1, Rep: 21, Tree: 3 > FP1
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

23._CCN_51 RUQ_1736

50 %
32 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

24._CCN_51 MITC-000000

50 %
32 shared markers

 Offtype  View  View all
USDA-SHRS, United States of America
 Mars, 2018

25._CCN_51

47.3 %
37 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

 

  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1060 13TcSNP998 14TcSNP994 15TcSNP953
16TcSNP929 17TcSNP917 18TcSNP891 19TcSNP723 20TcSNP645
21TcSNP619 22TcSNP577 23TcSNP560 24TcSNP534 25TcSNP529
26TcSNP469 27TcSNP429 28TcSNP372 29TcSNP242 30TcSNP230
31TcSNP226 32TcSNP193 33TcSNP151 34TcSNP150 35TcSNP144
36TcSNP32 37TcSNP25