SNP Profiles of CRU 156 (MIS_TTOICGT_GU 175/P)   View Data

 Show/Hide Profiles

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCGGCGCTCTAACTGTCCAAGGCTAACT
1._CRU_156___
CCAACGCTTTAACCGTCCAAAGCTAACT
2._CRU_156___
CCAACGCTTTAACCGTCCAAAGCTAACT
3._CRU_156___
CCAACGCTTTAACCGTCCAAAGCTAACT
4._CRU_156___
CCAACGCTTTAACCGTCCAAAGCTAACT
5._CRU_156___
CCAACGCTTTAACCGTCCAAAGCTAACT
6._CRU_156___
CCAACGCTTTAACCGTCCAAAGCTAACT
7._CRU_156___
CCAACGCTTTAACCGTCCAAAGCTAACT
8._CRU_156___
CCAACGCTTTAACCGTCCAAAGCTAACT
9._CRU_156___
CCAACGCTTTAACCGTCCAAAGCTAACT
10._CRU_156___
CCAACGCTTTAACCGTCCAAAGCTAACT
11._CRU_156___
CCGGGGCCTTCCTTTTCCAAGGCCAGCC
12._CRU_156___
__GGGGCC______TT______CCAA__
13._CRU_156___
____CG________GT____AA__AG__
14._CRU_156___
GGGGCCGGAACCAAAA__AAGGGGAAGG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAGGCTCTCCGGAGACGGGGCTACAAGG
1._CRU_156___
AAGGTTCCCCGGAGACCCGTCCCCAAGG
2._CRU_156___
AAGGTTCCCCGGAGACCCGTCCCCAAGG
3._CRU_156___
AAGGTTCCCCGGAGACCCGTCCCCAAGG
4._CRU_156___
AAGGTTCCCCGGAGACCCGTCCCCAAGG
5._CRU_156___
AAGGTTCCCCGGAGACCCGTCCCCAAGG
6._CRU_156___
AAGGTTCCCCGGAGACCCGTCCCCAAGG
7._CRU_156___
AAGGTTCCCCGGAGACCCGTCCCCAAGG
8._CRU_156___
AAGGTTCCCCGGAGACCCGTCCCCAAGG
9._CRU_156___
AAGGTTCCCCGGAGACCCGTCCCCAAGG
10._CRU_156___
AAGGTTCCCCGGAGACCCGTCCCCAAGG
11._CRU_156___
AAGGCCCCGGGGAACCCCGGCCAAAGGG
12._CRU_156___
______CCGGGG__CCCCGGCCAAAG__
13._CRU_156___
________GGGTAACCCC____CC____
14._CRU_156___
AAGGGGGGCCCC__CCCCCC__AA__GG
 29 30 31 32 33 34 35 36 37 38     
_Input profile
AACTAAGGCCCTGTACTTGGX_XX_XX_XX_X
1._CRU_156___
ATCTAGGGACCTGTAAATGGX_XX_XX_XX_X
2._CRU_156___
ATCTAGGGACCTGTAAATGGX_XX_XX_XX_X
3._CRU_156___
ATCTAGGGACCTGTAAATGGX_XX_XX_XX_X
4._CRU_156___
ATCTAGGGACCTGTAAATGGX_XX_XX_XX_X
5._CRU_156___
ATCTAGGGACCTGTAAATGGX_XX_XX_XX_X
6._CRU_156___
ATCTAGGGACCTGTAAATGGX_XX_XX_XX_X
7._CRU_156___
ATCTAGGGACCTGTAAATGGX_XX_XX_XX_X
8._CRU_156___
ATCTAGGGACCTGTAAATGGX_XX_XX_XX_X
9._CRU_156___
ATCTAGGGACCTGTAAATGGX_XX_XX_XX_X
10._CRU_156___
ATCTAGGGACCTGTAAATGGX_XX_XX_XX_X
11._CRU_156___
AACCGGCCAATTGTAATTGGX_XX_XX_XX_X
12._CRU_156___
AACCGGCCAATTTTAA____X_XX_XX_XX_X
13._CRU_156___
____AG________CC____X_XX_XX_XX_X
14._CRU_156___
AAGGGGGGAAAAAAAATTGGX_XX_XX_XX_X

Input profile: CRU_156

 
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: CAMPUS 1 A X2 Y1
 Dapeng Zhang, 2016

1._CRU_156

77.6 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1708 6
 Dapeng Zhang, 2016

2._CRU_156

77.6 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1708 5
 Dapeng Zhang, 2016

3._CRU_156

77.6 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1708 3
 Dapeng Zhang, 2016

4._CRU_156

77.6 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1708 2
 Dapeng Zhang, 2016

5._CRU_156

77.6 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1708 1
 Dapeng Zhang, 2016

6._CRU_156 GC-01-131-7-08

77.6 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

7._CRU_156 GC-01-131-7-08

77.6 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

8._CRU_156 GC-01-131-7-08

77.6 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

9._CRU_156 GC-01-131-7-08

77.6 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

10._CRU_156 GC-01-131-7-08

77.6 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

11._CRU_156 RUQ_880

60.5 %
38 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

12._CRU_156 RUQ_880

50 %
23 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

13._CRU_156 RUQ_880

45.8 %
12 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

14._CRU_156 RUQ_880

41.2 %
34 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1075
11TcSNP1062 12TcSNP1060 13TcSNP998 14TcSNP994 15TcSNP953
16TcSNP929 17TcSNP917 18TcSNP891 19TcSNP872 20TcSNP723
21TcSNP645 22TcSNP591 23TcSNP577 24TcSNP560 25TcSNP534
26TcSNP529 27TcSNP469 28TcSNP429 29TcSNP372 30TcSNP242
31TcSNP230 32TcSNP226 33TcSNP193 34TcSNP151 35TcSNP150
36TcSNP144 37TcSNP32 38TcSNP25