SNP Profiles of CRU 156   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCAACGCTTTAACCGTCCCCAAAGCTAA
1._CRU_156
CCAACGCTTTAACCGTCCCCAAAGCTAA
2._CRU_156
CCAACGCTTTAACCGTCCCCAAAGCTAA
3._CRU_156
CCAACGCTTTAACCGTCCCCAAAGCTAA
4._CRU_156
CCAACGCTTTAACCGTCCCCAAAGCTAA
5._GC-01-131-7-08
CCAACGCTTTAACCGTCCCCAAAGCTAA
6._GC-01-131-7-08
CCAACGCTTTAACCGTCCCCAAAGCTAA
7._GC-01-131-7-08
CCAACGCTTTAACCGTCCCCAAAGCTAA
8._GC-01-131-7-08
CCAACGCTTTAACCGTCCCCAAAGCTAA
9._GC-01-131-7-08
CCAACGCTTTAACCGTCCCCAAAGCTAA
10._CRU_156
CCGGCGCTCTAACTGTCC__AAGGCTAA
11._RUQ_880
CCGGGGCCTTCCTTTTCCCCAAGGCCAG
12._RUQ_880
____CG________GT__TT__AA__AG
13._RUQ_880
__GGGGCC______TT________CCAA
14._RUQ_880
GGGGCCGGAACCAAAA____AAGGGGAA
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
CTAAGGTTCCCCGGAGCTACCCGTCCCC
1._CRU_156
CTAAGGTTCCCCGGAGCTACCCGTCCCC
2._CRU_156
CTAAGGTTCCCCGGAGCTACCCGTCCCC
3._CRU_156
CTAAGGTTCCCCGGAGCTACCCGTCCCC
4._CRU_156
CTAAGGTTCCCCGGAGCTACCCGTCCCC
5._GC-01-131-7-08
CTAAGGTTCCCCGGAGCTACCCGTCCCC
6._GC-01-131-7-08
CTAAGGTTCCCCGGAGCTACCCGTCCCC
7._GC-01-131-7-08
CTAAGGTTCCCCGGAGCTACCCGTCCCC
8._GC-01-131-7-08
CTAAGGTTCCCCGGAGCTACCCGTCCCC
9._GC-01-131-7-08
CTAAGGTTCCCCGGAGCTACCCGTCCCC
10._CRU_156
CTAAGGCTCTCCGGAG__ACGGGGCTAC
11._RUQ_880
CCAAGGCCCCGGGGAACCCCCCGGCCAA
12._RUQ_880
__________GGGTAA__CCCC____CC
13._RUQ_880
________CCGGGG__CCCCCCGGCCAA
14._RUQ_880
GGAAGGGGGGCCCC__GGCCCCCC__AA
 29 30 31 32 33 34 35 36 37 38 39 40   
_Input profile
AAGGATCTAGGGACCTGTAAATGGX_XX_X
1._CRU_156
AAGGATCTAGGGACCTGTAAATGGX_XX_X
2._CRU_156
AAGGATCTAGGGACCTGTAAATGGX_XX_X
3._CRU_156
AAGGATCTAGGGACCTGTAAATGGX_XX_X
4._CRU_156
AAGGATCTAGGGACCTGTAAATGGX_XX_X
5._GC-01-131-7-08
AAGGATCTAGGGACCTGTAAATGGX_XX_X
6._GC-01-131-7-08
AAGGATCTAGGGACCTGTAAATGGX_XX_X
7._GC-01-131-7-08
AAGGATCTAGGGACCTGTAAATGGX_XX_X
8._GC-01-131-7-08
AAGGATCTAGGGACCTGTAAATGGX_XX_X
9._GC-01-131-7-08
AAGGATCTAGGGACCTGTAAATGGX_XX_X
10._CRU_156
AAGGAACTAAGGCCCTGTACTTGGX_XX_X
11._RUQ_880
AGGGAACCGGCCAATTGTAATTGGX_XX_X
12._RUQ_880
________AG________CC____X_XX_X
13._RUQ_880
AG__AACCGGCCAATTTTAA____X_XX_X
14._RUQ_880
__GGAAGGGGGGAAAAAAAATTGGX_XX_X

Input profile: CRU_156

 
Mars Center for Cocoa Science, Brazil
Location: 1708 1
 Dapeng Zhang, 2016

1._CRU_156

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1708 6
 Dapeng Zhang, 2016

2._CRU_156

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1708 5
 Dapeng Zhang, 2016

3._CRU_156

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1708 3
 Dapeng Zhang, 2016

4._CRU_156

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1708 2
 Dapeng Zhang, 2016

5._CRU_156 GC-01-131-7-08

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

6._CRU_156 GC-01-131-7-08

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

7._CRU_156 GC-01-131-7-08

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

8._CRU_156 GC-01-131-7-08

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

9._CRU_156 GC-01-131-7-08

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

10._CRU_156

77.6 %
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: CAMPUS 1 A X2 Y1
 Dapeng Zhang, 2016

11._CRU_156 RUQ_880

60 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

12._CRU_156 RUQ_880

57.7 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

13._CRU_156 RUQ_880

54.2 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

14._CRU_156 RUQ_880

38.6 %
35 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25