SNP Profiles of CRU 156 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CC	AA	CG	CT	TT	AA	CC	GT	CC	CC	AA	AG	CT	AA
1._CRU_156	CC	AA	CG	CT	TT	AA	CC	GT	CC	CC	AA	AG	CT	AA
2._CRU_156	CC	AA	CG	CT	TT	AA	CC	GT	CC	CC	AA	AG	CT	AA
3._CRU_156	CC	AA	CG	CT	TT	AA	CC	GT	CC	CC	AA	AG	CT	AA
4._CRU_156	CC	AA	CG	CT	TT	AA	CC	GT	CC	CC	AA	AG	CT	AA
5._GC-01-131-7-08	CC	AA	CG	CT	TT	AA	CC	GT	CC	CC	AA	AG	CT	AA
6._GC-01-131-7-08	CC	AA	CG	CT	TT	AA	CC	GT	CC	CC	AA	AG	CT	AA
7._GC-01-131-7-08	CC	AA	CG	CT	TT	AA	CC	GT	CC	CC	AA	AG	CT	AA
8._GC-01-131-7-08	CC	AA	CG	CT	TT	AA	CC	GT	CC	CC	AA	AG	CT	AA
9._GC-01-131-7-08	CC	AA	CG	CT	TT	AA	CC	GT	CC	CC	AA	AG	CT	AA
10._CRU_156	CC	GG	CG	CT	CT	AA	CT	GT	CC	__	AA	GG	CT	AA
11._RUQ_880	CC	GG	GG	CC	TT	CC	TT	TT	CC	CC	AA	GG	CC	AG
12._RUQ_880	__	__	CG	__	__	__	__	GT	__	TT	__	AA	__	AG
13._RUQ_880	__	GG	GG	CC	__	__	__	TT	__	__	__	__	CC	AA
14._RUQ_880	GG	GG	CC	GG	AA	CC	AA	AA	__	__	AA	GG	GG	AA

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	CT	AA	GG	TT	CC	CC	GG	AG	CT	AC	CC	GT	CC	CC
1._CRU_156	CT	AA	GG	TT	CC	CC	GG	AG	CT	AC	CC	GT	CC	CC
2._CRU_156	CT	AA	GG	TT	CC	CC	GG	AG	CT	AC	CC	GT	CC	CC
3._CRU_156	CT	AA	GG	TT	CC	CC	GG	AG	CT	AC	CC	GT	CC	CC
4._CRU_156	CT	AA	GG	TT	CC	CC	GG	AG	CT	AC	CC	GT	CC	CC
5._GC-01-131-7-08	CT	AA	GG	TT	CC	CC	GG	AG	CT	AC	CC	GT	CC	CC
6._GC-01-131-7-08	CT	AA	GG	TT	CC	CC	GG	AG	CT	AC	CC	GT	CC	CC
7._GC-01-131-7-08	CT	AA	GG	TT	CC	CC	GG	AG	CT	AC	CC	GT	CC	CC
8._GC-01-131-7-08	CT	AA	GG	TT	CC	CC	GG	AG	CT	AC	CC	GT	CC	CC
9._GC-01-131-7-08	CT	AA	GG	TT	CC	CC	GG	AG	CT	AC	CC	GT	CC	CC
10._CRU_156	CT	AA	GG	CT	CT	CC	GG	AG	__	AC	GG	GG	CT	AC
11._RUQ_880	CC	AA	GG	CC	CC	GG	GG	AA	CC	CC	CC	GG	CC	AA
12._RUQ_880	__	__	__	__	__	GG	GT	AA	__	CC	CC	__	__	CC
13._RUQ_880	__	__	__	__	CC	GG	GG	__	CC	CC	CC	GG	CC	AA
14._RUQ_880	GG	AA	GG	GG	GG	CC	CC	__	GG	CC	CC	CC	__	AA

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	AA	GG	AT	CT	AG	GG	AC	CT	GT	AA	AT	GG	X_X	X_X
1._CRU_156	AA	GG	AT	CT	AG	GG	AC	CT	GT	AA	AT	GG	X_X	X_X
2._CRU_156	AA	GG	AT	CT	AG	GG	AC	CT	GT	AA	AT	GG	X_X	X_X
3._CRU_156	AA	GG	AT	CT	AG	GG	AC	CT	GT	AA	AT	GG	X_X	X_X
4._CRU_156	AA	GG	AT	CT	AG	GG	AC	CT	GT	AA	AT	GG	X_X	X_X
5._GC-01-131-7-08	AA	GG	AT	CT	AG	GG	AC	CT	GT	AA	AT	GG	X_X	X_X
6._GC-01-131-7-08	AA	GG	AT	CT	AG	GG	AC	CT	GT	AA	AT	GG	X_X	X_X
7._GC-01-131-7-08	AA	GG	AT	CT	AG	GG	AC	CT	GT	AA	AT	GG	X_X	X_X
8._GC-01-131-7-08	AA	GG	AT	CT	AG	GG	AC	CT	GT	AA	AT	GG	X_X	X_X
9._GC-01-131-7-08	AA	GG	AT	CT	AG	GG	AC	CT	GT	AA	AT	GG	X_X	X_X
10._CRU_156	AA	GG	AA	CT	AA	GG	CC	CT	GT	AC	TT	GG	X_X	X_X
11._RUQ_880	AG	GG	AA	CC	GG	CC	AA	TT	GT	AA	TT	GG	X_X	X_X
12._RUQ_880	__	__	__	__	AG	__	__	__	__	CC	__	__	X_X	X_X
13._RUQ_880	AG	__	AA	CC	GG	CC	AA	TT	TT	AA	__	__	X_X	X_X
14._RUQ_880	__	GG	AA	GG	GG	GG	AA	AA	AA	AA	TT	GG	X_X	X_X

Input profile: CRU_156

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Mars Center for Cocoa Science, Brazil

Location: 1708 6

Dapeng Zhang, 2016

1._CRU_156

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1708 5

Dapeng Zhang, 2016

2._CRU_156

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1708 3

Dapeng Zhang, 2016

3._CRU_156

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1708 2

Dapeng Zhang, 2016

4._CRU_156

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1708 1

Dapeng Zhang, 2016

5._CRU_156 GC-01-131-7-08

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

6._CRU_156 GC-01-131-7-08

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

7._CRU_156 GC-01-131-7-08

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

8._CRU_156 GC-01-131-7-08

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

9._CRU_156 GC-01-131-7-08

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

10._CRU_156

77.6 %
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: CAMPUS 1 A X2 Y1

Dapeng Zhang, 2016

11._CRU_156 RUQ_880

60 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

12._CRU_156 RUQ_880

57.7 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

Ame
0.651 Cri
0.345

13._CRU_156 RUQ_880

54.2 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

14._CRU_156 RUQ_880

38.6 %
35 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP645	23	TcSNP619	24	TcSNP591	25	TcSNP577
26	TcSNP560	27	TcSNP534	28	TcSNP529	29	TcSNP469	30	TcSNP429
31	TcSNP372	32	TcSNP242	33	TcSNP230	34	TcSNP226	35	TcSNP193
36	TcSNP151	37	TcSNP150	38	TcSNP144	39	TcSNP32	40	TcSNP25