SNP Profiles of PA150 [PER]   View Data

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 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CTAATTTTAATTCTAACTAGCTAAGGCT
1._EET_272_[ECU]___
__AATT____TT____CTAG________
2._EET_272_[ECU]___
CCAATTTTAATTCCAACTAGCTAAGGCT
3._EET_272_[ECU]___
CCAATTTTAATTCCAACTAGCTAAGGCT
4._EET_272_[ECU]___
CCAATTTTAATTCCAACTAGCTAAGGCT
5._EET_272_[ECU]___
CCAATTTTAATTCCAACTAGCTAAGGCT
6._EET_272_[ECU]___
CCAATTTTAATTCCAACTAGCTAAGGCT
7._EET_272_[ECU]___
CCAATTTTAATTCCAACTAGCTAAGGCT
8._EET_272_[ECU]___
CCAATTTTAATTCCAACTAGCTAAGGCT
9._EET_272_[ECU]___
CCAATTTTAATTCCAACTAGCTAAGGCT
10._EET_272_[ECU]___
CCAATTTTAATTCCAACTAGCTAAGGCT
11._EET_272_[ECU]___
CCAATTTTAATTCCAACTAGCTAAGGCT
12._EET_272_[ECU]___
CCAATTTTAATTCCAACTAGCTAAGGCT
13._EET_272_[ECU]___
CCAATTTTAATTCCAACTAGCTAAGGCT
14._EET_272_[ECU]___
CCAATTTTAATTCCAACTAGCTAAGGCT
15._EET_272_[ECU]___
CCAATTTTAATTCCAACTAGCTAAGGCT
16._EET_272_[ECU]___
CCAATTTTAATTCCAACTAGCTAAGGCT
17._EET_272_[ECU]___
CCAATTTTAATTCCAACTAGCTAAGGCT
18._EET_272_[ECU]___
__________TTCC____AG________
19._EET_272_[ECU]___
CTGGCCTTACTTCCAACCAGCTAACCCT
20._EET_272_[ECU]___
CTGGCCTTACTTCCAACCAGCTAACCCT
21._EET_272_[ECU]___
CTGGCCTTACTTCCAACCAGCTAACCCT
22._EET_272_[ECU]___
CTGGCCTTACTTCCAACCAGCTAACCCT
23._EET_272_[ECU]___
GGAAAAAAAAAA__AAAGAGAGAAGGAG
24._EET_272_[ECU]___
GGAAAAAAAAAA__AAAGAGAGAAGGAG
25._EET_272_[ECU]___
AGGGGGAAACAA__AAGGAGAGAACCAG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
CTGGAACTAAGTCTAAAGCTAACCAACT
1._EET_272_[ECU]___
TTGG__CTAAGTCTAA__CTAACCAACT
2._EET_272_[ECU]___
CTGGAACTAAGTCTAAGGCTAACCAACT
3._EET_272_[ECU]___
CTGGAACTAAGTCTAAGGCTAACCAACT
4._EET_272_[ECU]___
CTGGAACTAAGTCTAAGGCTAACCAACT
5._EET_272_[ECU]___
CTGGAACTAAGTCTAAGGCTAACCAACT
6._EET_272_[ECU]___
CTGGAACTAAGTCTAAGGCTAACCAACT
7._EET_272_[ECU]___
CTGGAACTAAGTCTAAGGCTAACCAACT
8._EET_272_[ECU]___
CTGGAACTAAGTCTAAGGCTAACCAACT
9._EET_272_[ECU]___
CTGGAACTAAGTCTAAGGCTAACCAACT
10._EET_272_[ECU]___
CTGGAACTAAGTCTAAGGCTAACCAACT
11._EET_272_[ECU]___
CTGGAACTAAGTCTAAGGCTAACCAACT
12._EET_272_[ECU]___
CTGGAACTAAGTCTAAGGCTAACCAACT
13._EET_272_[ECU]___
CTGGAACTAAGTCTAAGGCTAACCAACT
14._EET_272_[ECU]___
CTGGAACTAAGTCTAAGGCTAACCAACT
15._EET_272_[ECU]___
CTGGAACTAAGTCTAAGGCTAACCAACT
16._EET_272_[ECU]___
CTGGAACTAAGTCTAAGGCTAACCAACT
17._EET_272_[ECU]___
CTGGAACTAAGTCTAAGGCTAACCAACT
18._EET_272_[ECU]___
__GGAA______________AA______
19._EET_272_[ECU]___
CCGGAGTTCCGTCCAAGGCCAGCCAACC
20._EET_272_[ECU]___
CCGGAGTTCCGTCCAAGGCCAGCCAACC
21._EET_272_[ECU]___
CCGGAGTTCCGTCCAAGGCCAGCC__CC
22._EET_272_[ECU]___
CCGGAGTTCCGTCCAAGGCCAGCC__CC
23._EET_272_[ECU]___
AGCC__AGAAAC____GGAGAAGGAAAG
24._EET_272_[ECU]___
AGCC__AGAAAC____GGAGAAGGAAAG
25._EET_272_[ECU]___
GGCC__AACCAC____GGGGAGGGACGG
 29 30             
_Input profile
ACGGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
1._EET_272_[ECU]___
AC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
2._EET_272_[ECU]___
ACGGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
3._EET_272_[ECU]___
ACGGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
4._EET_272_[ECU]___
ACGGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
5._EET_272_[ECU]___
ACGGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
6._EET_272_[ECU]___
ACGGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
7._EET_272_[ECU]___
ACGGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
8._EET_272_[ECU]___
ACGGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
9._EET_272_[ECU]___
ACGGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
10._EET_272_[ECU]___
ACGGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
11._EET_272_[ECU]___
ACGGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
12._EET_272_[ECU]___
ACGGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
13._EET_272_[ECU]___
ACGGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
14._EET_272_[ECU]___
ACGGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
15._EET_272_[ECU]___
ACGGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
16._EET_272_[ECU]___
ACGGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
17._EET_272_[ECU]___
ACGGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
18._EET_272_[ECU]___
AC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
19._EET_272_[ECU]___
CCGGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
20._EET_272_[ECU]___
CCGGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
21._EET_272_[ECU]___
CCGGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
22._EET_272_[ECU]___
CCGGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
23._EET_272_[ECU]___
ACGGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
24._EET_272_[ECU]___
ACGGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
25._EET_272_[ECU]___
CCGGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X

Input profile: EET_272_[ECU]

 
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: CAMPUS 3 X16 Y8
 Dapeng Zhang, 2016

1._EET_272_[ECU] RUQ_6

97.2 %
18 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

2._EET_272_[ECU]

95 %
30 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 1 > FP
 Dapeng Zhang, 2016

3._EET_272_[ECU] GC-03-032-3-11

95 %
30 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

4._EET_272_[ECU] GC-03-032-3-11

95 %
30 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

5._EET_272_[ECU] GC-03-032-3-11

95 %
30 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

6._EET_272_[ECU] GC-03-032-3-11

95 %
30 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

7._EET_272_[ECU]

95 %
30 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 5
 Dapeng Zhang, 2016

8._EET_272_[ECU]

95 %
30 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 9
 Dapeng Zhang, 2016

9._EET_272_[ECU]

95 %
30 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 10
 Dapeng Zhang, 2016

10._EET_272_[ECU]

95 %
30 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 13
 Dapeng Zhang, 2016

11._EET_272_[ECU]

95 %
30 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 16
 Dapeng Zhang, 2016

12._EET_272_[ECU]

95 %
30 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 2 > FP
 Dapeng Zhang, 2016

13._EET_272_[ECU]

95 %
30 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 3 > FP
 Dapeng Zhang, 2016

14._EET_272_[ECU] GC-03-032-3-11

95 %
30 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

15._EET_272_[ECU] GC-03-032-3-11

95 %
30 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

16._EET_272_[ECU] GC-03-032-3-11

95 %
30 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

17._EET_272_[ECU] GC-03-032-3-11

95 %
30 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

18._EET_272_[ECU] RUQ_6

92.9 %
7 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

19._EET_272_[ECU]

66.7 %
30 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 8
 Dapeng Zhang, 2016

20._EET_272_[ECU] GC-03-032-3-11

66.7 %
30 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

21._EET_272_[ECU]

65.5 %
29 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 7
 Dapeng Zhang, 2016

22._EET_272_[ECU] GC-03-032-3-11

65.5 %
29 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

23._EET_272_[ECU] RUQ_6

44.2 %
26 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

24._EET_272_[ECU] MITC-000381

44.2 %
26 shared markers

USDA-SHRS, United States of America
 Mars, 2018

25._EET_272_[ECU] GC-03-32-3-11

25 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 3, Block: 3, Rep: 11, Tree: 7
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1442 4TcSNP1414 5TcSNP1350
6TcSNP1253 7TcSNP1144 8TcSNP1075 9TcSNP1060 10TcSNP998
11TcSNP994 12TcSNP953 13TcSNP929 14TcSNP917 15TcSNP891
16TcSNP723 17TcSNP645 18TcSNP619 19TcSNP591 20TcSNP560
21TcSNP534 22TcSNP469 23TcSNP429 24TcSNP242 25TcSNP230
26TcSNP226 27TcSNP193 28TcSNP151 29TcSNP144 30TcSNP25