SNP Profiles of PA150 [PER]   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCAACCTTTTAATTTTCCCCAAGGCTAG
1._EET_272_[ECU]___
CCAACCTTTTAATTTTCCCCAAGGCTAG
2._EET_272_[ECU]___
CCAACCTTTTAATTTTCCCCAAGGCTAG
3._EET_272_[ECU]___
CCAACCTTTTAATTTTCCCCAAGGCTAG
4._EET_272_[ECU]___
CCAACCTTTTAATTTTCCCCAAGGCTAG
5._EET_272_[ECU]___
CCAACCTTTTAATTTTCCCCAAGGCTAG
6._EET_272_[ECU]___
CCAACCTTTTAATTTTCCCCAAGGCTAG
7._EET_272_[ECU]___
CCAACCTTTTAATTTTCCCCAAGGCTAG
8._EET_272_[ECU]___
CCAACCTTTTAATTTTCCCCAAGGCTAG
9._EET_272_[ECU]___
CCAACCTTTTAATTTTCCCCAAGGCTAG
10._EET_272_[ECU]___
CCAACCTTTTAATTTTCCCCAAGGCTAG
11._EET_272_[ECU]___
CCAACCTTTTAATTTTCCCCAAGGCTAG
12._EET_272_[ECU]___
CCAACCTTTTAATTTTCCCCAAGGCTAG
13._EET_272_[ECU]___
CCAACCTTTTAATTTTCCCCAAGGCTAG
14._EET_272_[ECU]___
CCAACCTTTTAATTTTCCCCAAGGCTAG
15._EET_272_[ECU]___
CCAACCTTTTAATTTTCCCCAAGGCTAG
16._EET_272_[ECU]___
__AACCTT______TT________CTAG
17._EET_272_[ECU]___
____CC________TT__CC__GG__AG
18._EET_272_[ECU]___
CTAA__TTTTAA__TT__CTAA__CTAG
19._EET_272_[ECU]___
CTGGGGCCTTACCTTTCCCCAAAGCCAG
20._EET_272_[ECU]___
CTGGGGCCTTACCTTTCCCCAAAGCCAG
21._EET_272_[ECU]___
CTGGGGCCTTACCTTTCCCCAAAGCCAG
22._EET_272_[ECU]___
CTGGGGCCTTACCTTTCCCCAAAGCCAG
23._EET_272_[ECU]___
GGAAGGAAAAAAAAAA____AAGGAGAG
24._EET_272_[ECU]___
GGAAGGAAAAAAAAAA____AAGGAGAG
25._EET_272_[ECU]___
AGGGCCGGAAACAGAA____AAAGGGAG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
CTAAGGCTCTCCGGAACTAAGGGTCTCC
1._EET_272_[ECU]___
CTAAGGCTCTCCGGAACTAAGGGTCTCC
2._EET_272_[ECU]___
CTAAGGCTCTCCGGAACTAAGGGTCTCC
3._EET_272_[ECU]___
CTAAGGCTCTCCGGAACTAAGGGTCTCC
4._EET_272_[ECU]___
CTAAGGCTCTCCGGAACTAAGGGTCTCC
5._EET_272_[ECU]___
CTAAGGCTCTCCGGAACTAAGGGTCTCC
6._EET_272_[ECU]___
CTAAGGCTCTCCGGAACTAAGGGTCTCC
7._EET_272_[ECU]___
CTAAGGCTCTCCGGAACTAAGGGTCTCC
8._EET_272_[ECU]___
CTAAGGCTCTCCGGAACTAAGGGTCTCC
9._EET_272_[ECU]___
CTAAGGCTCTCCGGAACTAAGGGTCTCC
10._EET_272_[ECU]___
CTAAGGCTCTCCGGAACTAAGGGTCTCC
11._EET_272_[ECU]___
CTAAGGCTCTCCGGAACTAAGGGTCTCC
12._EET_272_[ECU]___
CTAAGGCTCTCCGGAACTAAGGGTCTCC
13._EET_272_[ECU]___
CTAAGGCTCTCCGGAACTAAGGGTCTCC
14._EET_272_[ECU]___
CTAAGGCTCTCCGGAACTAAGGGTCTCC
15._EET_272_[ECU]___
CTAAGGCTCTCCGGAACTAAGGGTCTCC
16._EET_272_[ECU]___
________TTCCGG__CTAAGGGTCTCC
17._EET_272_[ECU]___
__________CCGGAA____GG____AC
18._EET_272_[ECU]___
CTAAGGCTCT__GGAACTAA__GTCT__
19._EET_272_[ECU]___
CTAACCCTCCGGGGAGTTCCCGGTCCAC
20._EET_272_[ECU]___
CTAACCCTCCGGGGAGTTCCCGGTCCAC
21._EET_272_[ECU]___
CTAACCCTCCGGGGAGTTCCCGGTCCAC
22._EET_272_[ECU]___
CTAACCCTCCGGGGAGTTCCCGGTCCAC
23._EET_272_[ECU]___
AGAAGGAGAGGGCC__AGAAGGAC__CC
24._EET_272_[ECU]___
AGAAGGAGAGGGCC__AGAAGGAC__CC
25._EET_272_[ECU]___
AGAACCAGGGCCCC__AACCCGAC__AC
 29 30 31 32 33 34 35 36 37 38 39 40   
_Input profile
AAGGAACTAACCAACTGGACTTGGX_XX_X
1._EET_272_[ECU]___
AAGGAACTAACCAACTGGACTTGGX_XX_X
2._EET_272_[ECU]___
AAGGAACTAACCAACTGGACTTGGX_XX_X
3._EET_272_[ECU]___
AAGGAACTAACCAACTGGACTTGGX_XX_X
4._EET_272_[ECU]___
AAGGAACTAACCAACTGGACTTGGX_XX_X
5._EET_272_[ECU]___
AAGGAACTAACCAACTGGACTTGGX_XX_X
6._EET_272_[ECU]___
AAGGAACTAACCAACTGGACTTGGX_XX_X
7._EET_272_[ECU]___
AAGGAACTAACCAACTGGACTTGGX_XX_X
8._EET_272_[ECU]___
AAGGAACTAACCAACTGGACTTGGX_XX_X
9._EET_272_[ECU]___
AAGGAACTAACCAACTGGACTTGGX_XX_X
10._EET_272_[ECU]___
AAGGAACTAACCAACTGGACTTGGX_XX_X
11._EET_272_[ECU]___
AAGGAACTAACCAACTGGACTTGGX_XX_X
12._EET_272_[ECU]___
AAGGAACTAACCAACTGGACTTGGX_XX_X
13._EET_272_[ECU]___
AAGGAACTAACCAACTGGACTTGGX_XX_X
14._EET_272_[ECU]___
AAGGAACTAACCAACTGGACTTGGX_XX_X
15._EET_272_[ECU]___
AAGGAACTAACCAACTGGACTTGGX_XX_X
16._EET_272_[ECU]___
AA__AACTAACCAACTGGAC____X_XX_X
17._EET_272_[ECU]___
________AA________AC____X_XX_X
18._EET_272_[ECU]___
AAAG__CTAACCAACT__AC__GGX_XX_X
19._EET_272_[ECU]___
AAGGAACCAGCCAACCGGCCATGGX_XX_X
20._EET_272_[ECU]___
AAGGAACCAGCCAACCGGCCATGGX_XX_X
21._EET_272_[ECU]___
AAGGAACCAGCC__CCGGCCATGGX_XX_X
22._EET_272_[ECU]___
AAGGAACCAGCC__CCGGCCATGGX_XX_X
23._EET_272_[ECU]___
__GGAAAGAAGGAAAGCCACTTGGX_XX_X
24._EET_272_[ECU]___
__GGAAAGAAGGAAAGCCACTTGGX_XX_X
25._EET_272_[ECU]___
__GGAAGGAGGGACGGCCCCATGGX_XX_X

Input profile: EET_272_[ECU]

 
Mars Center for Cocoa Science, Brazil
Location: 3311 5
 Dapeng Zhang, 2016

1._EET_272_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 2 > FP
 Dapeng Zhang, 2016

2._EET_272_[ECU] GC-03-032-3-11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

3._EET_272_[ECU] GC-03-032-3-11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

4._EET_272_[ECU] GC-03-032-3-11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

5._EET_272_[ECU] GC-03-032-3-11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

6._EET_272_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 9
 Dapeng Zhang, 2016

7._EET_272_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 10
 Dapeng Zhang, 2016

8._EET_272_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 13
 Dapeng Zhang, 2016

9._EET_272_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 16
 Dapeng Zhang, 2016

10._EET_272_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 1 > FP
 Dapeng Zhang, 2016

11._EET_272_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 3 > FP
 Dapeng Zhang, 2016

12._EET_272_[ECU] GC-03-032-3-11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

13._EET_272_[ECU] GC-03-032-3-11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

14._EET_272_[ECU] GC-03-032-3-11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

15._EET_272_[ECU] GC-03-032-3-11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

16._EET_272_[ECU] RUQ_6

97.9 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

17._EET_272_[ECU] RUQ_6

95.8 %
12 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

18._EET_272_[ECU]

95 %
30 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: CAMPUS 3 X16 Y8
 Dapeng Zhang, 2016

19._EET_272_[ECU]

65 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 8
 Dapeng Zhang, 2016

20._EET_272_[ECU] GC-03-032-3-11

65 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

21._EET_272_[ECU]

64.1 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 7
 Dapeng Zhang, 2016

22._EET_272_[ECU] GC-03-032-3-11

64.1 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

23._EET_272_[ECU] RUQ_6

48.6 %
35 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

24._EET_272_[ECU] MITC-000381

48.6 %
35 shared markers

USDA-SHRS, United States of America
 Mars, 2018

25._EET_272_[ECU] GC-03-32-3-11

34.3 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 3, Block: 3, Rep: 11, Tree: 7
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25