SNP Profiles of SCA-6   View Data

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 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
ATCCCCCCAGAATTTTCTTTAGTTTTTT
1._GC-01-026-2-03
ATCCCCCCAGAATTTTCTTTAGTTTTTT
2._GC-01-026-2-03
ATCCCCCCAGAATTTTCTTTAGTTTTTT
3._GC-01-026-2-03
ATCCCCCCAGAATTTTCTTTAGTTTTTT
4._GC-01-026-2-03
ATCCCCCCAGAATTTTCTTTAGTTTTTT
5._GC-01-026-2-03
ATCCCCCCAGAATTTTCTTTAGTTTTTT
6._GC-01-026-2-03
ATCCCCCCAGAATTTTCTTTAGTTTTTT
7._GC-01-026-2-03
ATCCCCCCAGAATTTTCTTTAGTTTTTT
8._GC-01-026-2-03
ATCCCCCCAGAATTTTCTTTAGTTTTTT
9._GC-01-026-2-03
ATCCCCCCAGAATTTTCTTTAGTTTTTT
10._GC-01-026-2-03
ATCCCCCCAGAA__TTCTTTAGTTTTTT
11._GC-01-026-2-03
ATCCCCCCAGAATTTTCTTTAGTTTTTT
12._SCA_6
ATCCCCCC________CTTTAG__TT__
13._SCA_6
ATCCCCCC________CTTTAG__TT__
14._SCA_6
ATCCCCCC________CTTTAG__TT__
15._SCA_6
ATCCCCCC________CTTTAG__TT__
16._SCA_6
ATCCCCCC________CTTTAG__TT__
17._SCA_6
ATCCCCCC________CTTTAG__TT__
18._SCA_6
ATCCCCCC________CTTTAG__TT__
19._SCA_6
ATCCCCCC________CTTTAG__TT__
20._SCA_6
ATCCCCCC________CTTTAG__TT__
21._SCA_6
ATCCCCCC________CTTTAG__TT__
22._SCA_6
ATCCCCCC________CTTTAG__TT__
23._SCA_6
ATCCCCCC________CTTTAG__TT__
24._SCA_6
ATCCCCCC________CTTTAG__TT__
25._SCA_6
ATCCCCCC________CTTTAG__TT__
26._SCA_6
ATCCCCCC________CTTTAG__TT__
27._SCA_6
ATCCCCCC________CTTTAG__TT__
28._SCA_6
ATCCCCCC________CTTTAG__TT__
29._GC-01-026-2-03
ATCCCCCCAGAATTTTCTTTAGTTTTTT
30._RUQ_234
ATCCCCCC________CTTTAG__TT__
31._SCA_6
ATCCCCCC________CTTTAG__TT__
32._SCA_6
ATCCCCCC________CTTTAG__TT__
33._SCA_6
ATCCCCCC________CTTTAG__TT__
34._SCA_6
ATCCCCCC________CTTTAG__TT__
35._GC-01-26-2-03
ATCCCCCCAGAATTTTCTTTAGTTTTTT
36._GC-01-26-2-03
ATCCCCCCAGAATTTTCTTTAGTTTTTT
37._GC-01-26-2-03
ATCCCCCCAGAATTTTCTTTAGTTTTTT
38._GC-01-26-2-03
ATCCCCCCAGAATTTTCTTTAGTTTTTT
39._RUQ_234
____CCCC____CT__CT____TTTT__
40._SCA_6
ATCCCCCC________CTTTAG__TT__
41._RUQ_234B
______CC____CT______________
42._RUQ_234
______CC____CT______________
43._SCA_6
ATCCCCCC________CCTTAG__TT__
44._SCA6
______CC________CT______TT__
45._RUQ_234
ATCC__CCAGAA__AAAG__AGAAAAAA
46._MITC-000343
ATCC__CCAGAA__AAAG__AGAAAAAA
47._MITC-000344
ATCC__CCAGAA__AAAG__AGAAAAAA
48._MITC-000345
ATCC__CCAGAA__AAAG__AGAAAAAA
49._MITC-000347
ATCC__CCAGAA__AAAG__AGAAAAAA
50._MITC-000348
ATCC__CCAGAA__AAAG__AGAAAAAA
51._MITC-000349
ATCC__CCAGAA__AAAG__AGAAAAAA
52._MITC-000376
ATCC__CCAGAA__AAAG__AGAAAAAA
53._MITC-000452
ATCC__CCAGAA__AAAG__AGAAAAAA
54._SCA_6_TC_(Penn_State)_Fld#_197_Plt#_6
ATAC__ACAGAG__AGGG__AGAAAGAG
55._SCA_6_Fld#_16_Plt#_1
ATAC__ACAGAG__AGGG__AGAAAGAG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
ATAAAAGGCCCGCCCCAACTGGAAAAGG
1._GC-01-026-2-03
ATAAAAGGCCCGCCCCAACTGGAAAAGG
2._GC-01-026-2-03
ATAAAAGGCCCGCCCCAACTGGAAAAGG
3._GC-01-026-2-03
ATAAAAGGCCCGCCCCAACTGGAAAAGG
4._GC-01-026-2-03
ATAAAAGGCCCGCCCCAACTGGAAAAGG
5._GC-01-026-2-03
ATAAAAGGCCCGCCCCAACTGGAAAAGG
6._GC-01-026-2-03
ATAAAAGGCCCGCCCCAACTGGAAAAGG
7._GC-01-026-2-03
ATAAAAGGCCCGCCCCAACTGGAAAAGG
8._GC-01-026-2-03
ATAAAAGGCCCGCCCCAACTGGAAAAGG
9._GC-01-026-2-03
ATAAAAGGCCCGCCCCAACTGGAAAAGG
10._GC-01-026-2-03
ATAAAAGGCCCGCCCCAACTGGAAAAGG
11._GC-01-026-2-03
ATAAAAGGCCCGCCCCAACTGG__AAGG
12._SCA_6
______GG____CC________AAAA__
13._SCA_6
______GG____CC________AAAA__
14._SCA_6
______GG____CC________AAAA__
15._SCA_6
______GG____CC________AAAA__
16._SCA_6
______GG____CC________AAAA__
17._SCA_6
______GG____CC________AAAA__
18._SCA_6
______GG____CC________AAAA__
19._SCA_6
______GG____CC________AAAA__
20._SCA_6
______GG____CC________AAAA__
21._SCA_6
______GG____CC________AAAA__
22._SCA_6
______GG____CC________AAAA__
23._SCA_6
______GG____CC________AAAA__
24._SCA_6
______GG____CC________AAAA__
25._SCA_6
______GG____CC________AAAA__
26._SCA_6
______GG____CC________AAAA__
27._SCA_6
______GG____CC________AAAA__
28._SCA_6
______GG____CC__________AA__
29._GC-01-026-2-03
ATAAAAGGCCCGCCCCAACTGGAAAAGG
30._RUQ_234
______GG____CC________AAAA__
31._SCA_6
______GG____CC________AAAA__
32._SCA_6
______GG____CC________AAAA__
33._SCA_6
______GG____CC________AAAA__
34._SCA_6
______GG____CC________AAAA__
35._GC-01-26-2-03
ATAAAAGGCCCGCCCCAACTGGAAAAGG
36._GC-01-26-2-03
ATAAAAGGCCCGCCCCAACTGGAAAAGG
37._GC-01-26-2-03
ATAAAAGGCCCGCCCCAACTGGAAAAGG
38._GC-01-26-2-03
ATAAAAGGCCCGCCCCAACTGGAAAAGG
39._RUQ_234
__________CG________GG__AAGG
40._SCA_6
______GG____CC________AAAA__
41._RUQ_234B
______GGCC__________________
42._RUQ_234
______GGCC__________________
43._SCA_6
______GG____CC________AAAA__
44._SCA6
____AA____CG__CC____GG__AAGG
45._RUQ_234
ATAAAAGGGG__CCGGAAAGGGAAAACC
46._MITC-000343
ATAAAAGGGG__CCGGAAAGGGAAAACC
47._MITC-000344
ATAAAAGGGG__CCGGAAAGGGAAAACC
48._MITC-000345
ATAAAAGGGG__CCGGAAAGGGAAAACC
49._MITC-000347
ATAAAAGGGG__CCGGAAAGGGAAAACC
50._MITC-000348
ATAAAAGGGG__CCGGAAAGGGAAAACC
51._MITC-000349
ATAAAAGGGG__CCGGAAAGGGAAAACC
52._MITC-000376
ATAAAAGGGG__CCGGAAAGGGAAAACC
53._MITC-000452
ATAAAAGGGG__CCGGAAAGGGAAAACC
54._SCA_6_TC_(Penn_State)_Fld#_197_Plt#_6
ATACAGAGCG__CCAGAGAAGGATAACG
55._SCA_6_Fld#_16_Plt#_1
ATACAGAGCG__CCAGAGAAGGATAACG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
1._GC-01-026-2-03
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
2._GC-01-026-2-03
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
3._GC-01-026-2-03
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
4._GC-01-026-2-03
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
5._GC-01-026-2-03
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
6._GC-01-026-2-03
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
7._GC-01-026-2-03
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
8._GC-01-026-2-03
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
9._GC-01-026-2-03
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
10._GC-01-026-2-03
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
11._GC-01-026-2-03
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
12._SCA_6
CCTT______CG__AAGG____AG____
13._SCA_6
CCTT______CG__AAGG____AG____
14._SCA_6
CCTT______CG__AAGG____AG____
15._SCA_6
CCTT______CG__AAGG____AG____
16._SCA_6
CCTT______CG__AAGG____AG____
17._SCA_6
CCTT______CG__AAGG____AG____
18._SCA_6
CCTT______CG__AAGG____AG____
19._SCA_6
CCTT______CG__AAGG____AG____
20._SCA_6
CCTT______CG__AAGG____AG____
21._SCA_6
CCTT______CG__AAGG____AG____
22._SCA_6
CCTT______CG__AAGG____AG____
23._SCA_6
CCTT______CG__AAGG____AG____
24._SCA_6
CCTT______CG__AAGG____AG____
25._SCA_6
CCTT______CG__AAGG____AG____
26._SCA_6
CCTT______CG__AAGG____AG____
27._SCA_6
CCTT______CG__AAGG____AG____
28._SCA_6
CCTT______CG__AAGG____AG____
29._GC-01-026-2-03
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
30._RUQ_234
CCTT______CG__AAGG____AG____
31._SCA_6
CCTT______CG__AAGG____AG____
32._SCA_6
CCTT______CG__AAGG____AG____
33._SCA_6
CCTT______CG__AAGG____AG____
34._SCA_6
CCTT______CG__AAGG____AG____
35._GC-01-26-2-03
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
36._GC-01-26-2-03
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
37._GC-01-26-2-03
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
38._GC-01-26-2-03
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
39._RUQ_234
CC______GGCGCCAAGG____AGCC__
40._SCA_6
CCTT______CG__AAGG____AG____
41._RUQ_234B
CC________CG__AA________CC__
42._RUQ_234
CC________CG__AA________CC__
43._SCA_6
CCTT______CG__AAGG____AG____
44._SCA6
GG______GGCG________TT__CC__
45._RUQ_234
GGTTAAAAGGCGCCAACCAAAAAGGGGG
46._MITC-000343
GGTTAAAAGGCGCCAACCAAAAAGGGGG
47._MITC-000344
GGTTAAAAGGCGCCAACCAAAAAGGGGG
48._MITC-000345
GGTTAAAAGGCGCCAACCAAAAAGGGGG
49._MITC-000347
GGTTAAAAGGCGCCAACCAAAAAGGGGG
50._MITC-000348
GGTTAAAAGGCGCCAACCAAAAAGGGGG
51._MITC-000349
GGTTAAAAGGCGCCAACCAAAAAGGGGG
52._MITC-000376
GGTTAAAAGGCGCCAACCAAAAAGGGGG
53._MITC-000452
GGTTAAAAGGCGCCAACCAAAAAGGGGG
54._SCA_6_TC_(Penn_State)_Fld#_197_Plt#_6
CGATAAACAGCGCCAGACACAAAGAGAG
55._SCA_6_Fld#_16_Plt#_1
CGATAAACAGCGCCAGACACAAAGAGAG
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
CGGGTTCTAGAAAACCAAAAAAGGTTCC
1._GC-01-026-2-03
CGGGTTCTAGAAAACCAAAAAAGGTTCC
2._GC-01-026-2-03
CGGGTTCTAGAAAACCAAAAAAGGTTCC
3._GC-01-026-2-03
CGGGTTCTAGAAAACCAAAAAAGGTTCC
4._GC-01-026-2-03
CGGGTTCTAGAAAACCAAAAAAGGTTCC
5._GC-01-026-2-03
CGGGTTCTAGAAAACCAAAAAAGGTTCC
6._GC-01-026-2-03
CGGGTTCTAGAAAACCAAAAAAGGTTCC
7._GC-01-026-2-03
CGGGTTCTAGAAAACCAAAAAAGGTTCC
8._GC-01-026-2-03
CGGGTTCTAGAAAACCAAAAAAGGTTCC
9._GC-01-026-2-03
CGGGTTCTAGAAAACCAAAAAAGGTTCC
10._GC-01-026-2-03
CGGGTTCTAGAAAACCAAAAAAGGTTCC
11._GC-01-026-2-03
CGGGTTCTAGAAAACCAAAAAAGGTTCC
12._SCA_6
______CT________________TTCC
13._SCA_6
______CT________________TTCC
14._SCA_6
______CT________________TTCC
15._SCA_6
______CT________________TTCC
16._SCA_6
______CT________________TTCC
17._SCA_6
______CT________________TTCC
18._SCA_6
______CT________________TTCC
19._SCA_6
______CT________________TTCC
20._SCA_6
______CT________________TTCC
21._SCA_6
______CT________________TTCC
22._SCA_6
______CT________________TTCC
23._SCA_6
______CT________________TTCC
24._SCA_6
______CT________________TTCC
25._SCA_6
______CT________________TTCC
26._SCA_6
______CT________________TTCC
27._SCA_6
______CT________________TTCC
28._SCA_6
______CT________________TTCC
29._GC-01-026-2-03
CGGGTTCTAGGGAACCAAAAAAGGTTCC
30._RUQ_234
______CT________________TTCC
31._SCA_6
______CT________________TTCC
32._SCA_6
______CT________________TTCC
33._SCA_6
______CT________________TTCC
34._SCA_6
______CT________________TTCC
35._GC-01-26-2-03
CGGGTTCTAGAAAACCAAAAAAGGTTCC
36._GC-01-26-2-03
CGGGTTCTAGAAAACCAAAAAAGGTTCC
37._GC-01-26-2-03
CGGGTTCTAGAAAACCAAAAAAGGTTCC
38._GC-01-26-2-03
CGGGTTCTAG__AACCAAAAAAGGTTCC
39._RUQ_234
__GGTT____AA____________TT__
40._SCA_6
______CT________________TTCC
41._RUQ_234B
__________AA________________
42._RUQ_234
__________AA________________
43._SCA_6
______TT________________TTCC
44._SCA6
____TT__AG______________TT__
45._RUQ_234
CGCC__AG__AAAAGG__AAAACCAAGG
46._MITC-000343
CGCC__AG__AAAAGG__AAAACCAAGG
47._MITC-000344
CGCC__AG__AAAAGG__AAAACCAAGG
48._MITC-000345
CGCC__AG__AAAAGG__AAAACCAAGG
49._MITC-000347
CGCC__AG__AAAAGG__AAAACCAAGG
50._MITC-000348
CGCC__AG__AAAAGG__AAAACCAAGG
51._MITC-000349
CGCC__AG__AAAAGG__AAAACCAAGG
52._MITC-000376
CGCC__AG__AAAAGG__AAAACCAAGG
53._MITC-000452
CGCC__AG__AAAAGG__AAAACCAAGG
54._SCA_6_TC_(Penn_State)_Fld#_197_Plt#_6
GGCC__GG__AGAAGG__AGAGACAGAG
55._SCA_6_Fld#_16_Plt#_1
GGCC__GG__AGAAGG__AGAGACAGAG
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
TTGGCCCCCTCCCCGGACAAGGGGAACG
1._GC-01-026-2-03
TTGGCCCCCTCCCCGGACAAGGGGAACG
2._GC-01-026-2-03
TTGGCCCCCTCCCCGGACAAGGGGAACG
3._GC-01-026-2-03
TTGGCCCCCTCCCCGGACAAGGGGAACG
4._GC-01-026-2-03
TTGGCCCCCTCCCCGGACAAGGGGAACG
5._GC-01-026-2-03
TTGGCCCCCTCCCCGGACAAGGGGAACG
6._GC-01-026-2-03
TTGGCCCCCTCCCCGGACAAGGGGAACG
7._GC-01-026-2-03
TTGGCCCCCTCCCCGGACAAGGGGAACG
8._GC-01-026-2-03
TTGGCCCCCTCCCCGGACAAGGGGAACG
9._GC-01-026-2-03
TTGGCCCCCTCCCCGGACAAGGGGAACG
10._GC-01-026-2-03
TTGGCCCCCTCCCCGGACAAGGGGAACG
11._GC-01-026-2-03
TTGGCCCCCTCCCCGGACAAGGGGAACG
12._SCA_6
____CC__CTCCCC__ACAAGGGG____
13._SCA_6
____CC__CTCCCC__ACAAGGGG____
14._SCA_6
____CC__CTCCCC__ACAAGGGG____
15._SCA_6
____CC__CTCCCC__ACAAGGGG____
16._SCA_6
____CC__CTCCCC__ACAAGGGG____
17._SCA_6
____CC__CTCCCC__ACAAGGGG____
18._SCA_6
____CC__CTCCCC__ACAAGGGG____
19._SCA_6
____CC__CTCCCC__ACAAGGGG____
20._SCA_6
____CC__CTCCCC__ACAAGGGG____
21._SCA_6
____CC__CTCCCC__ACAAGGGG____
22._SCA_6
____CC__CTCCCC__ACAAGGGG____
23._SCA_6
____CC__CTCCCC__ACAAGGGG____
24._SCA_6
____CC__CTCCCC__ACAAGGGG____
25._SCA_6
____CC__CTCCCC__ACAAGGGG____
26._SCA_6
____CC__CTCCCC__ACAAGGGG____
27._SCA_6
____CC__CTCCCC__ACAAGGGG____
28._SCA_6
____CC__CTCCCC__ACAAGGGG____
29._GC-01-026-2-03
TTGGCCCCCTCCCCGGACAAGGGGAACG
30._RUQ_234
____CC__CTCCCC__ACAAGGGG____
31._SCA_6
____CC__CTCCCC__ACAAGGGG____
32._SCA_6
____CC__CTCCCC__ACAAGGGG____
33._SCA_6
____CC__CTCCCC__ACAAGGGG____
34._SCA_6
____CC__CTCCCC__ACAAGGGG____
35._GC-01-26-2-03
TTGGCCCCCTCCCCGGACAAGGGGAACG
36._GC-01-26-2-03
TTGGCCCCCTCCCCGGACAAGGGGAACG
37._GC-01-26-2-03
TTGGCCCCCTCCCCGGACAAGGGGAACG
38._GC-01-26-2-03
TTGGCCCCCTCCCCGGACAAGGGGAACG
39._RUQ_234
TT__CCCCCTCC__GGCCAAGGGGAA__
40._SCA_6
____CC__CTCCCC__ACAAGGGG____
41._RUQ_234B
__GG____________ACAA__GGAA__
42._RUQ_234
__GG____________ACAA__GGAA__
43._SCA_6
____CC__TTCCCC__ACAAGGGG____
44._SCA6
____GGCC__CC__GGCCAA______CG
45._RUQ_234
AAGGGGGGAGCCCCGGACAACCCCAA__
46._MITC-000343
AAGGGGGGAGCCCCGGACAACCCCAA__
47._MITC-000344
AAGGGGGGAGCCCCGGACAACCCCAA__
48._MITC-000345
AAGGGGGGAGCCCCGGACAACCCCAA__
49._MITC-000347
AAGGGGGGAGCCCCGGACAACCCCAA__
50._MITC-000348
AAGGGGGGAGCCCCGGACAACCCCAA__
51._MITC-000349
AAGGGGGGAGCCCCGGACAACCCCAA__
52._MITC-000376
AAGGGGGGAGCCCCGGACAACCCCAA__
53._MITC-000452
AAGGGGGGAGCCCCGGACAACCCCAA__
54._SCA_6_TC_(Penn_State)_Fld#_197_Plt#_6
AAAGGGAGGGACCGGGAAAAACCCAG__
55._SCA_6_Fld#_16_Plt#_1
AAAGGGAGGGACCGGGAAAAACCCAG__
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
AACCCCGGCCCCAAAACCCCAACCTTCC
1._GC-01-026-2-03
AACCCCGGCCCCAAAACCCCAACCTTCC
2._GC-01-026-2-03
AACCCCGGCCCCAAAACCCCAACCTTCC
3._GC-01-026-2-03
AACCCCGGCCCCAAAACCCCAACCTTCC
4._GC-01-026-2-03
AACCCCGGCCCCAAAACCCCAACCTTCC
5._GC-01-026-2-03
AACCCCGGCCCCAAAACCCCAACCTTCC
6._GC-01-026-2-03
AACCCCGGCCCCAAAACCCCAACCTTCC
7._GC-01-026-2-03
AACCCCGGCCCCAAAACCCCAACCTTCC
8._GC-01-026-2-03
AACCCCGGCCCCAAAACCCCAACCTTCC
9._GC-01-026-2-03
AACCCCGGCCCCAAAACCCCAACCTTCC
10._GC-01-026-2-03
AACCCCGGCCCCAAAACCCCAACCTTCC
11._GC-01-026-2-03
AACCCCGGCCCCAAAACCCCAACCTTCC
12._SCA_6
AACC__________AACC______TTCC
13._SCA_6
AACC__________AACC______TTCC
14._SCA_6
AACC__________AACC______TTCC
15._SCA_6
AACC__________AACC______TTCC
16._SCA_6
AACC__________AACC______TTCC
17._SCA_6
AACC__________AACC______TTCC
18._SCA_6
AACC__________AACC______TTCC
19._SCA_6
AACC__________AACC______TTCC
20._SCA_6
AACC__________AACC______TTCC
21._SCA_6
AACC__________AACC______TTCC
22._SCA_6
AACC__________AACC______TTCC
23._SCA_6
AACC__________AACC______TTCC
24._SCA_6
AACC__________AACC______TTCC
25._SCA_6
AACC__________AACC______TTCC
26._SCA_6
AACC__________AACC______TTCC
27._SCA_6
AACC__________AACC______TTCC
28._SCA_6
AACC__________AACC______TTCC
29._GC-01-026-2-03
AACCCCGGCCCCAAAACCCCAACCTTCC
30._RUQ_234
AGCC__________AACC______TTCC
31._SCA_6
AGCC__________AACC______TTCC
32._SCA_6
AGCC__________AACC______TTCC
33._SCA_6
AGCC__________AACC______TTCC
34._SCA_6
AGCC__________AACC______TTCC
35._GC-01-26-2-03
AACCCCGGCCCCAAAACCCCAACCTTCC
36._GC-01-26-2-03
AACCCCGGCCCCAAAACCCCAACCTTCC
37._GC-01-26-2-03
AACCCCGGCCCCAAAACCCCAACCTTCC
38._GC-01-26-2-03
AACCCCGGCCCCAAAACCCCAACCTTCC
39._RUQ_234
______________AACC____CCTT__
40._SCA_6
AGCC__________AACC______TTCC
41._RUQ_234B
AG____________AACC____CC____
42._RUQ_234
AG____________AACC____CC____
43._SCA_6
AGCT__________AACC______TTCC
44._SCA6
________________GG________CC
45._RUQ_234
__GGCCGGCCCC__AAGGGGAACCAAGG
46._MITC-000343
__GGCCGGCCCC__AAGGGGAACCAAGG
47._MITC-000344
__GGCCGGCCCC__AAGGGGAACCAAGG
48._MITC-000345
__GGCCGGCCCC__AAGGGGAACCAAGG
49._MITC-000347
__GGCCGGCCCC__AAGGGGAACCAAGG
50._MITC-000348
__GGCCGGCCCC__AAGGGGAACCAAGG
51._MITC-000349
__GGCCGGCCCC__AAGGGGAACCAAGG
52._MITC-000376
__GGCCGGCCCC__AAGGGGAACCAAGG
53._MITC-000452
__GGCCGGCCCC__AAGGGGAACCAAGG
54._SCA_6_TC_(Penn_State)_Fld#_197_Plt#_6
__AGACAGCCAC__ACCGGGATACAAAG
55._SCA_6_Fld#_16_Plt#_1
__AGACAGCCAC__ACCGGGATACAAAG
 85 86 87 88 89 90 91 92 93      
_Input profile
CCCCGGCCCTGGCCTTAGX_XX_XX_XX_XX_X
1._GC-01-026-2-03
CCCCGGCCCTGGCCTTAGX_XX_XX_XX_XX_X
2._GC-01-026-2-03
CCCCGGCCCTGGCCTTAGX_XX_XX_XX_XX_X
3._GC-01-026-2-03
CCCCGGCCCTGGCCTTAGX_XX_XX_XX_XX_X
4._GC-01-026-2-03
CCCCGGCCCTGGCCTTAGX_XX_XX_XX_XX_X
5._GC-01-026-2-03
CCCCGGCCCTGGCCTTAGX_XX_XX_XX_XX_X
6._GC-01-026-2-03
CCCCGGCCCTGGCCTTAGX_XX_XX_XX_XX_X
7._GC-01-026-2-03
CCCCGGCCCTGGCCTTAGX_XX_XX_XX_XX_X
8._GC-01-026-2-03
CCCCGGCCCTGGCCTTAGX_XX_XX_XX_XX_X
9._GC-01-026-2-03
CCCCGGCCCTGGCCTTAGX_XX_XX_XX_XX_X
10._GC-01-026-2-03
CCCCGGCCCTGGCCTTAGX_XX_XX_XX_XX_X
11._GC-01-026-2-03
CCCCGGCCCTGGCCTTAGX_XX_XX_XX_XX_X
12._SCA_6
CC__GG__CTGGCC____X_XX_XX_XX_XX_X
13._SCA_6
CC__GG__CTGGCC____X_XX_XX_XX_XX_X
14._SCA_6
CC__GG__CTGGCC____X_XX_XX_XX_XX_X
15._SCA_6
CC__GG__CTGGCC____X_XX_XX_XX_XX_X
16._SCA_6
CC__GG__CTGGCC____X_XX_XX_XX_XX_X
17._SCA_6
CC__GG__CTGGCC____X_XX_XX_XX_XX_X
18._SCA_6
CC__GG__CTGGCC____X_XX_XX_XX_XX_X
19._SCA_6
CC__GG__CTGGCC____X_XX_XX_XX_XX_X
20._SCA_6
CC__GG__CTGGCC____X_XX_XX_XX_XX_X
21._SCA_6
CC__GG__CTGGCC____X_XX_XX_XX_XX_X
22._SCA_6
CC__GG__CTGGCC____X_XX_XX_XX_XX_X
23._SCA_6
CC__GG__CTGGCC____X_XX_XX_XX_XX_X
24._SCA_6
CC__GG__CTGGCC____X_XX_XX_XX_XX_X
25._SCA_6
CC__GG__CTGGCC____X_XX_XX_XX_XX_X
26._SCA_6
CC__GG__CTGGCC____X_XX_XX_XX_XX_X
27._SCA_6
CC__GG__CTGG______X_XX_XX_XX_XX_X
28._SCA_6
CC__GG__CTGGCC____X_XX_XX_XX_XX_X
29._GC-01-026-2-03
CCCCGGCCCTGGCCTTAGX_XX_XX_XX_XX_X
30._RUQ_234
CC__GG__CTGGCC____X_XX_XX_XX_XX_X
31._SCA_6
CC__GG__CTGGCC____X_XX_XX_XX_XX_X
32._SCA_6
CC__GG__CTGGCC____X_XX_XX_XX_XX_X
33._SCA_6
CC__GG__CTGGCC____X_XX_XX_XX_XX_X
34._SCA_6
CC__GG__CTGGCC____X_XX_XX_XX_XX_X
35._GC-01-26-2-03
CCCCGGCCCTGGCCCCCCX_XX_XX_XX_XX_X
36._GC-01-26-2-03
CCCCGGCCCTGGCCCCCCX_XX_XX_XX_XX_X
37._GC-01-26-2-03
CCCCGGCCCTGG__CCCCX_XX_XX_XX_XX_X
38._GC-01-26-2-03
CCCCGGCCCTGGCCCCCCX_XX_XX_XX_XX_X
39._RUQ_234
____GGCCCTGG______X_XX_XX_XX_XX_X
40._SCA_6
CC__GG__TTGGCC____X_XX_XX_XX_XX_X
41._RUQ_234B
CC____CC__GG______X_XX_XX_XX_XX_X
42._RUQ_234
CC____CC__GG______X_XX_XX_XX_XX_X
43._SCA_6
CC__GG__TTGGCC____X_XX_XX_XX_XX_X
44._SCA6
__________________X_XX_XX_XX_XX_X
45._RUQ_234
__GG____AGCCGGAAAGX_XX_XX_XX_XX_X
46._MITC-000343
__GG____AGCCGGAAAGX_XX_XX_XX_XX_X
47._MITC-000344
__GG____AGCCGGAAAGX_XX_XX_XX_XX_X
48._MITC-000345
__GG____AGCCGGAAAGX_XX_XX_XX_XX_X
49._MITC-000347
__GG____AGCCGGAAAGX_XX_XX_XX_XX_X
50._MITC-000348
__GG____AGCCGGAAAGX_XX_XX_XX_XX_X
51._MITC-000349
__GG____AGCCGGAAAGX_XX_XX_XX_XX_X
52._MITC-000376
__GG____AGCCGGAAAGX_XX_XX_XX_XX_X
53._MITC-000452
__GG____AGCCGGAAAGX_XX_XX_XX_XX_X
54._SCA_6_TC_(Penn_State)_Fld#_197_Plt#_6
__GG____GGACAGATAGX_XX_XX_XX_XX_X
55._SCA_6_Fld#_16_Plt#_1
__GG____GGACAGATAGX_XX_XX_XX_XX_X

Input profile: SCA_6 GC-01-026-2-03

 
 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

1._SCA_6 GC-01-026-2-03

identical
93 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

2._SCA_6 GC-01-026-2-03

identical
93 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

3._SCA_6 GC-01-026-2-03

identical
93 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

4._SCA_6 GC-01-026-2-03

identical
93 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

5._SCA_6 GC-01-026-2-03

identical
93 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

6._SCA_6 GC-01-026-2-03

identical
93 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

7._SCA_6 GC-01-026-2-03

identical
93 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

8._SCA_6 GC-01-026-2-03

identical
93 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

9._SCA_6 GC-01-026-2-03

identical
93 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: Dead
 Mars, 2018

10._SCA_6 GC-01-026-2-03

identical
92 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

11._SCA_6 GC-01-026-2-03

identical
92 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

12._SCA_6

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1203 9
 Dapeng Zhang, 2016

13._SCA_6

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1203 16 > F
 Dapeng Zhang, 2016

14._SCA_6

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1203 11 > F
 Dapeng Zhang, 2016

15._SCA_6

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1203 14
 Dapeng Zhang, 2016

16._SCA_6

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1203 13
 Dapeng Zhang, 2016

17._SCA_6

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1203 10
 Dapeng Zhang, 2016

18._SCA_6

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1203 7 > FP
 Dapeng Zhang, 2016

19._SCA_6

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1203 8
 Dapeng Zhang, 2016

20._SCA_6

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1203 6
 Dapeng Zhang, 2016

21._SCA_6

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1203 5
 Dapeng Zhang, 2016

22._SCA_6

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1203 1
 Dapeng Zhang, 2016

23._SCA_6

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1203 2
 Dapeng Zhang, 2016

24._SCA_6

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1203 2
 Dapeng Zhang, 2016

25._SCA_6

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1203 3
 Dapeng Zhang, 2016

26._SCA_6

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1203 4
 Dapeng Zhang, 2016

27._SCA_6

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1203 1 > FP
 Dapeng Zhang, 2016

28._SCA_6

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1203 15
 Dapeng Zhang, 2016

29._SCA_6 GC-01-026-2-03

98.9 %
93 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

30._SCA_6 RUQ_234

98.8 %
40 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

31._SCA_6

98.8 %
40 shared markers

 View  View all  Clone  Any
Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P76 278
 Dapeng Zhang, 2016

32._SCA_6

98.8 %
40 shared markers

 View  View all  Clone  Any
Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P75 279
 Dapeng Zhang, 2016

33._SCA_6

98.8 %
40 shared markers

 View  View all  Clone  Any
Malaysian Cocoa Board (MCB), Malaysia
Location: C0267
 Dapeng Zhang, 2016

34._SCA_6

98.8 %
40 shared markers

 View  View all  Clone  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 644
 Dapeng Zhang, 2016

35._SCA_6 GC-01-26-2-03

97.8 %
93 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 3, Tree: PL16
Notes: PL16 FP4
 Mars, 2018

36._SCA_6 GC-01-26-2-03

97.8 %
93 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 3, Tree: PL7
Notes: PL7 FP3
 Mars, 2018

37._SCA_6 GC-01-26-2-03

97.8 %
92 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 3, Tree: PL1
Notes: PL1 FP1
 Mars, 2018

38._SCA_6 GC-01-26-2-03

97.8 %
92 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 3, Tree: PL11
Notes: PL11 FP2
 Mars, 2018

39._SCA_6 RUQ_234

97.6 %
41 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

40._SCA_6

97.5 %
40 shared markers

 View  View all  Clone  Any
Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

41._SCA_6 RUQ_234B

95.2 %
21 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

42._SCA_6 RUQ_234

95.2 %
21 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 
View Data
Sca
0.997

43._SCA_6

92.5 %
40 shared markers

 View  View all  Clone  Any
Indonesian Coffee and Cocoa Research Institute (ICCRI), Indonesia
Location: KW 268 I-022
 Dapeng Zhang, 2016

44._SCA_6 SCA6

86.5 %
26 shared markers

 View  View all  Clone  Any
Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

45._SCA_6 RUQ_234

52.5 %
80 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

46._SCA_6 MITC-000343

52.5 %
80 shared markers

 View  View all  Clone  Any
USDA-SHRS, United States of America
 Mars, 2018

47._SCA_6 MITC-000344

52.5 %
80 shared markers

 View  View all  Clone  Any
USDA-SHRS, United States of America
 Mars, 2018

48._SCA_6 MITC-000345

52.5 %
80 shared markers

 View  View all  Clone  Any
USDA-SHRS, United States of America
 Mars, 2018

49._SCA_6 MITC-000347

52.5 %
80 shared markers

 View  View all  Clone  Any
USDA-SHRS, United States of America
 Mars, 2018

50._SCA_6 MITC-000348

52.5 %
80 shared markers

 View  View all  Clone  Any
USDA-SHRS, United States of America
 Mars, 2018

51._SCA_6 MITC-000349

52.5 %
80 shared markers

 View  View all  Clone  Any
USDA-SHRS, United States of America
 Mars, 2018

52._SCA_6 MITC-000376

52.5 %
80 shared markers

 View  View all  Clone  Any
USDA-SHRS, United States of America
 Mars, 2018

53._SCA_6 MITC-000452

52.5 %
80 shared markers

 View  View all  Clone  Any
USDA-SHRS, United States of America
 Mars, 2018

54._SCA_6 SCA_6_TC_(Penn_State)_Fld#_197_Plt#_6

38.8 %
80 shared markers

 View  View all  Clone  Any
USDA-TARS, United States of America
Location: Field: 197, Tree: 6
Notes: TARS_Cacao_collection
 Mars, 2018

55._SCA_6 SCA_6_Fld#_16_Plt#_1

38.8 %
80 shared markers

 View  View all  Clone  Any
USDA-TARS, United States of America
Location: Field: 16, Tree: 1
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP577 35TcSNP90
36TcSNP998 37TcSNP150 38TcSNP28 39TcSNP751 40TcSNP1484
41TcSNP602 42TcSNP561 43TcSNP894 44TcSNP1063 45TcSNP1126
46TcSNP1270 47TcSNP606 48TcSNP329 49TcSNP689 50TcSNP944
51TcSNP1242 52TcSNP1383 53TcSNP547 54TcSNP776 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP1041
71TcSNP645 72TcSNP917 73Tcm003s01336581 74Tcm003s07402719 75Tcm001s00947643
76Tcm006s26664133 77Tcm002s20575712 78TcSNP529 79TcSNP1458 80TcSNP60
81TcSNP430 82TcSNP823 83TcSNP619 84TcSNP994 85TcSNP1144
86TcSNP1156 87TcSNP469 88TcSNP999 89TcSNP242 90TcSNP1253
91TcSNP1414 92TcSNP154 93TcSNP240