SNP Profiles of EET 399   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AAAACTACAGAGCTCCCTGGCTCCCTAT
1._UF_667___
AAAACTACAGAGCTCCCTGGCTCCCTAT
2._UF_667___
AAAACTACAGAGCTCCCTGGCTCCCTAT
3._UF_667___
AAAACTACAGAGCTCCCTGGCTCCCTAT
4._UF_667___
AAAACTACAGAGCTCCCTGGCTCCCTAT
5._UF_667___
AAAACTACAGAGCTCCCTGGCTCCCTAT
6._UF_667___
AAAACTACAGAGCTCCCTGGCTCCCTAT
7._UF_667___
AAAACTAC________CTGG__CC____
8._UF_667___
AAAACTAC________CTGG__CC____
9._UF_667___
AAAACTAC________CTGG__CC____
10._UF_667___
AAAACTAC________CTGG__CC____
11._UF_667___
AAAACTAC________CTGG__CC____
12._UF_667___
AAAACTAC________CTGG__CC____
13._UF_667___
AAAACTAC________CTGG__CC____
14._UF_667___
AAAACTAC________CTGG__CC____
15._UF_667___
AAAACTAC________CTGG__CC____
16._UF_667___
AAAACTAC________CTGG__CC____
17._UF_667___
AAAACTAC________CTGG__CC____
18._UF_667___
____CTAA____CT______CTCC____
19._UF_667___
______AC____CT______________
20._UF_667___
AACCCCCC________CCGG__CC____
21._UF_667___
AAAA__ACAGAG__GG__GGAGGGAGAT
22._UF_667___
AAAA__ACAGAG__GG__GGAGGGAGAT
23._UF_667___
AAAC__ACAGGG__GG__GGAGAGAATT
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
CCAAAAGGCGGGCTAGTTAGATATCGCG
1._UF_667___
CCAAAAGGCGGGCTAGTTAGATATCGCG
2._UF_667___
CCAAAAGGCGGGCTAGTTAGATATCGCG
3._UF_667___
CCAAAAGGCGGGCTAGTTAGATATCGCG
4._UF_667___
CCAAAAGGCGGGCTAGTTAGATATCGCG
5._UF_667___
CCAAAAGGCGGGCTAGTTAGATATCGCG
6._UF_667___
CCAAAAGGCGGGCTAGTTAGATATCGCG
7._UF_667___
____AA____GG________ATAT__CG
8._UF_667___
____AA____GG________ATAT__CG
9._UF_667___
____AA____GG________ATAT__CG
10._UF_667___
____AA____GG________ATAT__CG
11._UF_667___
____AA____GG________ATAT__CG
12._UF_667___
____AA____GG________ATAT__CG
13._UF_667___
____AA____GG________ATAT__CG
14._UF_667___
____AA____GG________ATAT__CG
15._UF_667___
____AA____GG________ATAT__CG
16._UF_667___
____AA____GG________ATAT__CG
17._UF_667___
____AA____GG________ATAT__CG
18._UF_667___
________CG________AG__ATCGCG
19._UF_667___
____AATT__________________CG
20._UF_667___
____GG____CG________ATAA__GG
21._UF_667___
CCAGAACC__GGAGAGAAAGATATCGCG
22._UF_667___
CCAGAACC__GGAGAGAAAGATATCGCG
23._UF_667___
ACGGAGCG__GGAGAGAGAGATATCGGG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
AACTGTAGCCACAGGTGGGTAGCCAACC
1._UF_667___
AACTGTAGCCACAGGTGGGTAGCCAACC
2._UF_667___
AACTGTAGCCACAGGTGGGTAGCCAACC
3._UF_667___
AACTGTAGCCACAGGTGGGTAGCCAACC
4._UF_667___
AACTGTAGCCACAGGTGGGTAGCCAACC
5._UF_667___
AACTGTAGCCACAGGTGGGTAGCCAACC
6._UF_667___
AACTGTAGCCACAGGTGGGTAGCCAACC
7._UF_667___
AA______CC__AGGT____AG______
8._UF_667___
AA______CC__AGGT____AG______
9._UF_667___
AA______CC__AGGT____AG______
10._UF_667___
AA______CC__AGGT____AG______
11._UF_667___
AA______CC__AGGT____AG______
12._UF_667___
AA______CC__AGGT____AG______
13._UF_667___
AA______CC__AGGT____AG______
14._UF_667___
AA______CC__AGGT____AG______
15._UF_667___
AA______CC__AGGT____AG______
16._UF_667___
AA______CC__AGGT____AG______
17._UF_667___
AA______CC__AGGT____AG______
18._UF_667___
______AGCCACAGGT____AGCC____
19._UF_667___
________CC__AG________CC____
20._UF_667___
AA______CG__AGGT____GG______
21._UF_667___
AAAGACAGCCACAGACCCACAGGGAAGG
22._UF_667___
AAAGACAGCCACAGACCCACAGGGAAGG
23._UF_667___
ATAGAAGGCGACAAACCCACAGGGAGGG
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
GTATCCAGAGAGCTCCGGGGGTTTCTCT
1._UF_667___
GTATCCAGAGAGCTCCGGGGGTTTCTCT
2._UF_667___
GTATCCAGAGAGCTCCGGGGGTTTCTCT
3._UF_667___
GTATCCAGAGAGCTCCGGGGGTTTCTCT
4._UF_667___
GTATCCAGAGAGCTCCGGGGGTTTCTCT
5._UF_667___
GTATCCAGAG__CTCCGGGGGTTTCTCT
6._UF_667___
GTATCCAGAGAGCTCCGGGGGTTTCTCT
7._UF_667___
____CC__________________CTCT
8._UF_667___
____CC__________________CTCT
9._UF_667___
____CC__________________CTCT
10._UF_667___
____CC__________________CTCT
11._UF_667___
____CC__________________CTCT
12._UF_667___
____CC__________________CTCT
13._UF_667___
____CC__________________CTCT
14._UF_667___
____CC__________________CTCT
15._UF_667___
____CC__________________CTCT
16._UF_667___
____CC__________________CTCT
17._UF_667___
____CC__________________CTCT
18._UF_667___
GTAT____AG____________CTCT__
19._UF_667___
________AG__________________
20._UF_667___
____TT__________________CTCC
21._UF_667___
AC__GG__AGAGAG__GGGGACAGAGAG
22._UF_667___
AC__GG__AGAGAG__GGGGACAGAGAG
23._UF_667___
AC__AG__AAAAAG__GGAGACGGAAGG
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
GTCGCTACGGAGACAGGTGTAGCTCCGG
1._UF_667___
GTCGCTACGGAGACAGGTGTAGCTCCGG
2._UF_667___
GTCGCTACGGAGACAGGTGTAGCTCCGG
3._UF_667___
GTCGCTACGGAGACAGGTGTAGCTCCGG
4._UF_667___
GTCGCTACGGAGACAGGTGTAGCTCCGG
5._UF_667___
GTCGCTACGGAGACAGGTGTAGCTCCGG
6._UF_667___
GT__CTACGGAGACAGGTGTAGCTCCGG
7._UF_667___
__CGCTACGG__ACAGGTGT______GG
8._UF_667___
__CGCTACGG__ACAGGTGT______GG
9._UF_667___
__CGCTACGG__ACAGGTGT______GG
10._UF_667___
__CGCTACGG__ACAGGTGT______GG
11._UF_667___
__CGCTACGG__ACAGGTGT______GG
12._UF_667___
__CGCTACGG__ACAGGTGT______GG
13._UF_667___
____CTACGG__ACAGGTGT______GG
14._UF_667___
__CGCTACGG__ACAGGTGT______AG
15._UF_667___
__CGCTACGG__ACAGGTGT______AG
16._UF_667___
__CGCTACGG__ACAGGTGT______AG
17._UF_667___
__GGCTACGG__ACAGGTGT______AG
18._UF_667___
GTCGCTAC__AGACAGGTGTAG______
19._UF_667___
____________ACAG__GTAG____AG
20._UF_667___
__CCCTAAGG__ACAGGGGG______AA
21._UF_667___
ACCGAGACGGAGACAGACACAG______
22._UF_667___
ACCGAGACGGAGACAGACACAG______
23._UF_667___
ACGGAGAAGGGGCCAAACCCGG______
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
TTACAGACAAAGCCCGCTATACCTCTCT
1._UF_667___
TTACAGACAAAGCCCGCTATACCTCTCT
2._UF_667___
TTACAGACAAAGCCCGCTATACCTCTCT
3._UF_667___
TTACAGACAAAGCCCGCTATACCTCTCT
4._UF_667___
TTACAGACAAAGCCCGCTATACCTCTCT
5._UF_667___
TTACAGACAAAGCCCGCTATACCTCTCT
6._UF_667___
TTACAGACAAAGCCCGCTATACCTCTCT
7._UF_667___
TT__________CCCG______CTCTCT
8._UF_667___
TT__________CCCG______CTCTCT
9._UF_667___
TT__________CCCG______CTCTCT
10._UF_667___
TT__________CCCG______CTCTCT
11._UF_667___
TT__________CCCG______CTCTCT
12._UF_667___
TT__________CCCG______CTCTCT
13._UF_667___
TT__________CCCG______CTCTCT
14._UF_667___
TT__________CCCG______CTCTCT
15._UF_667___
TT__________CCCG______CTCTCT
16._UF_667___
TT__________CCCG______CTCTCT
17._UF_667___
TT__________CCCG______CTCTCT
18._UF_667___
____________CCCG____ACCT____
19._UF_667___
____________ACCG____AC____CT
20._UF_667___
CT__________AACG______TTCCCC
21._UF_667___
AAACAGACAA__CCCGAGATACAGAG__
22._UF_667___
AAACAGACAA__CCCGAGATACAGAG__
23._UF_667___
AGAAAAACAA__ACCCAGATCCAAAA__
 85 86 87 88 89 90 91 92       
_Input profile
TTAGCTCTGTTTATGGX_XX_XX_XX_XX_XX_X
1._UF_667___
TTAGCTCTGTTTATGGX_XX_XX_XX_XX_XX_X
2._UF_667___
TTAGCTCTGTTTATGGX_XX_XX_XX_XX_XX_X
3._UF_667___
TTAGCTCTGTTTATGGX_XX_XX_XX_XX_XX_X
4._UF_667___
TTAGCTCTGTTTATGGX_XX_XX_XX_XX_XX_X
5._UF_667___
TTAGCTCTGTTTATGGX_XX_XX_XX_XX_XX_X
6._UF_667___
TTAGCTCTGTTTATGGX_XX_XX_XX_XX_XX_X
7._UF_667___
__AG__CTGTTT____X_XX_XX_XX_XX_XX_X
8._UF_667___
__AG__CTGTTT____X_XX_XX_XX_XX_XX_X
9._UF_667___
__AG__CTGTTT____X_XX_XX_XX_XX_XX_X
10._UF_667___
__AG__CTGTTT____X_XX_XX_XX_XX_XX_X
11._UF_667___
__AG__CTGTTT____X_XX_XX_XX_XX_XX_X
12._UF_667___
__AG__CTGTTT____X_XX_XX_XX_XX_XX_X
13._UF_667___
__AG__CTGTTT____X_XX_XX_XX_XX_XX_X
14._UF_667___
__AG__CTGTTT____X_XX_XX_XX_XX_XX_X
15._UF_667___
__AG__CTGTTT____X_XX_XX_XX_XX_XX_X
16._UF_667___
__AG__CTGTTT____X_XX_XX_XX_XX_XX_X
17._UF_667___
__AG__CTGTTT____X_XX_XX_XX_XX_XX_X
18._UF_667___
__AGCCCTGT______X_XX_XX_XX_XX_XX_X
19._UF_667___
____CT__GT______X_XX_XX_XX_XX_XX_X
20._UF_667___
__AG__CCTTTT____X_XX_XX_XX_XX_XX_X
21._UF_667___
AA____AGAAAAATGGX_XX_XX_XX_XX_XX_X
22._UF_667___
AA____AGAAAAATGGX_XX_XX_XX_XX_XX_X
23._UF_667___
AG____AGAAAGAAGGX_XX_XX_XX_XX_XX_X

Input profile: UF_667 GC-01-029-2-06

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

1._UF_667 GC-01-029-2-06

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

2._UF_667 GC-01-029-2-06

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

3._UF_667 GC-01-029-2-06

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP2
 Mars, 2018

4._UF_667 GC-01-029-2-06

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

5._UF_667 GC-01-029-2-06

identical
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

6._UF_667 GC-01-029-2-06

identical
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11 > FP4
 Mars, 2018

7._UF_667

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1206 2
 Dapeng Zhang, 2016

8._UF_667

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1206 5 > FP
 Dapeng Zhang, 2016

9._UF_667

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1206 1 > FP
 Dapeng Zhang, 2016

10._UF_667

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1206 10
 Dapeng Zhang, 2016

11._UF_667

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1206 7
 Dapeng Zhang, 2016

12._UF_667

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1206 3
 Dapeng Zhang, 2016

13._UF_667

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1206 11 > F
 Dapeng Zhang, 2016

14._UF_667

98.7 %
39 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

15._UF_667 RUQ_55

98.7 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

16._UF_667

98.7 %
39 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: C0244
 Dapeng Zhang, 2016

17._UF_667

97.4 %
39 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F466 T2
 Dapeng Zhang, 2016

18._UF_667 RUQ_55

96.3 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

19._UF_667 RUQ_55

90 %
20 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

20._UF_667

62.8 %
39 shared markers

Indonesian Coffee and Cocoa Research Institute (ICCRI), Indonesia
Location: KW 292 I-042
 Dapeng Zhang, 2016

21._UF_667 GC-01-29-2-6

57.1 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 6, Tree: 1 > FP1
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

22._UF_667 RUQ_55

57.1 %
78 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

23._UF_667 UF_667_Fld#_119_Plt#_1

40.4 %
78 shared markers

USDA-TARS, United States of America
Location: Field: 119, Tree: 1
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1165 10TcSNP429
11TcSNP75 12TcSNP891 13TcSNP122 14TcSNP316 15TcSNP521
16TcSNP860 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP226 59TcSNP1442 60TcSNP193
61TcSNP25 62TcSNP364 63TcSNP144 64TcSNP230 65TcSNP560
66TcSNP723 67TcSNP731 68TcSNP701 69TcSNP1041 70TcSNP645
71TcSNP917 72Tcm003s01336581 73Tcm003s07402719 74Tcm001s00947643 75Tcm006s26664133
76Tcm002s20575712 77TcSNP529 78TcSNP1458 79TcSNP60 80TcSNP430
81TcSNP823 82TcSNP619 83TcSNP994 84TcSNP1144 85TcSNP1156
86TcSNP469 87TcSNP999 88TcSNP242 89TcSNP1253 90TcSNP1414
91TcSNP154 92TcSNP240