SNP Profiles of EET 399   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AAAACTACAGAGCTCCCTGGCTCCCTAT
1._UF_667___
AAAACTACAGAGCTCCCTGGCTCCCTAT
2._UF_667___
AAAACTACAGAGCTCCCTGGCTCCCTAT
3._UF_667___
AAAACTACAGAGCTCCCTGGCTCCCTAT
4._UF_667___
AAAACTACAGAGCTCCCTGGCTCCCTAT
5._UF_667___
AAAACTACAGAGCTCCCTGGCTCCCTAT
6._UF_667___
AAAACTACAGAGCTCCCTGGCTCCCTAT
7._UF_667___
AAAACTAC________CTGG__CC____
8._UF_667___
AAAACTAC________CTGG__CC____
9._UF_667___
AAAACTAC________CTGG__CC____
10._UF_667___
AAAACTAC________CTGG__CC____
11._UF_667___
AAAACTAC________CTGG__CC____
12._UF_667___
AAAACTAC________CTGG__CC____
13._UF_667___
AAAACTAC________CTGG__CC____
14._UF_667___
AAAACTAC________CTGG__CC____
15._UF_667___
AAAACTAC________CTGG__CC____
16._UF_667___
AAAACTAC________CTGG__CC____
17._UF_667___
AAAACTAC________CTGG__CC____
18._UF_667___
____CTAA____CT______CTCC____
19._UF_667___
______AC____CT______________
20._UF_667___
AACCCCCC________CCGG__CC____
21._UF_667___
AAAA__ACAGAG__GG__GGAGGGAGAT
22._UF_667___
AAAA__ACAGAG__GG__GGAGGGAGAT
23._UF_667___
AAAC__ACAGGG__GG__GGAGAGAATT
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
CCAAAAGGCGGGCTAGTTAGATATCGCG
1._UF_667___
CCAAAAGGCGGGCTAGTTAGATATCGCG
2._UF_667___
CCAAAAGGCGGGCTAGTTAGATATCGCG
3._UF_667___
CCAAAAGGCGGGCTAGTTAGATATCGCG
4._UF_667___
CCAAAAGGCGGGCTAGTTAGATATCGCG
5._UF_667___
CCAAAAGGCGGGCTAGTTAGATATCGCG
6._UF_667___
CCAAAAGGCGGGCTAGTTAGATATCGCG
7._UF_667___
____AA____GG________ATAT__CG
8._UF_667___
____AA____GG________ATAT__CG
9._UF_667___
____AA____GG________ATAT__CG
10._UF_667___
____AA____GG________ATAT__CG
11._UF_667___
____AA____GG________ATAT__CG
12._UF_667___
____AA____GG________ATAT__CG
13._UF_667___
____AA____GG________ATAT__CG
14._UF_667___
____AA____GG________ATAT__CG
15._UF_667___
____AA____GG________ATAT__CG
16._UF_667___
____AA____GG________ATAT__CG
17._UF_667___
____AA____GG________ATAT__CG
18._UF_667___
________CG________AG__ATCGCG
19._UF_667___
____AATT__________________CG
20._UF_667___
____GG____CG________ATAA__GG
21._UF_667___
CCAGAACC__GGAGAGAAAGATATCGCG
22._UF_667___
CCAGAACC__GGAGAGAAAGATATCGCG
23._UF_667___
ACGGAGCG__GGAGAGAGAGATATCGGG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
AACTGTAGCCACAGGTGGGTAGCCAACC
1._UF_667___
AACTGTAGCCACAGGTGGGTAGCCAACC
2._UF_667___
AACTGTAGCCACAGGTGGGTAGCCAACC
3._UF_667___
AACTGTAGCCACAGGTGGGTAGCCAACC
4._UF_667___
AACTGTAGCCACAGGTGGGTAGCCAACC
5._UF_667___
AACTGTAGCCACAGGTGGGTAGCCAACC
6._UF_667___
AACTGTAGCCACAGGTGGGTAGCCAACC
7._UF_667___
AA______CC__AGGT____AG______
8._UF_667___
AA______CC__AGGT____AG______
9._UF_667___
AA______CC__AGGT____AG______
10._UF_667___
AA______CC__AGGT____AG______
11._UF_667___
AA______CC__AGGT____AG______
12._UF_667___
AA______CC__AGGT____AG______
13._UF_667___
AA______CC__AGGT____AG______
14._UF_667___
AA______CC__AGGT____AG______
15._UF_667___
AA______CC__AGGT____AG______
16._UF_667___
AA______CC__AGGT____AG______
17._UF_667___
AA______CC__AGGT____AG______
18._UF_667___
______AGCCACAGGT____AGCC____
19._UF_667___
________CC__AG________CC____
20._UF_667___
AA______CG__AGGT____GG______
21._UF_667___
AAAGACAGCCACAGACCCACAGGGAAGG
22._UF_667___
AAAGACAGCCACAGACCCACAGGGAAGG
23._UF_667___
ATAGAAGGCGACAAACCCACAGGGAGGG
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
GTATCCAGAGCTCCGGGGGTTTCTCTGT
1._UF_667___
GTATCCAGAGCTCCGGGGGTTTCTCTGT
2._UF_667___
GTATCCAGAGCTCCGGGGGTTTCTCTGT
3._UF_667___
GTATCCAGAGCTCCGGGGGTTTCTCTGT
4._UF_667___
GTATCCAGAGCTCCGGGGGTTTCTCTGT
5._UF_667___
GTATCCAGAGCTCCGGGGGTTTCTCTGT
6._UF_667___
GTATCCAGAGCTCCGGGGGTTTCTCTGT
7._UF_667___
____CC________________CTCT__
8._UF_667___
____CC________________CTCT__
9._UF_667___
____CC________________CTCT__
10._UF_667___
____CC________________CTCT__
11._UF_667___
____CC________________CTCT__
12._UF_667___
____CC________________CTCT__
13._UF_667___
____CC________________CTCT__
14._UF_667___
____CC________________CTCT__
15._UF_667___
____CC________________CTCT__
16._UF_667___
____CC________________CTCT__
17._UF_667___
____CC________________CTCT__
18._UF_667___
GTAT____AG__________CTCT__GT
19._UF_667___
________AG__________________
20._UF_667___
____TT________________CTCC__
21._UF_667___
AC__GG__AGAG__GGGGACAGAGAGAC
22._UF_667___
AC__GG__AGAG__GGGGACAGAGAGAC
23._UF_667___
AC__AG__AAAG__GGAGACGGAAGGAC
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
AGCGCTCTACGGAGACAGGTGTAGCTCC
1._UF_667___
AGCGCTCTACGGAGACAGGTGTAGCTCC
2._UF_667___
AGCGCTCTACGGAGACAGGTGTAGCTCC
3._UF_667___
AGCGCTCTACGGAGACAGGTGTAGCTCC
4._UF_667___
AGCGCTCTACGGAGACAGGTGTAGCTCC
5._UF_667___
AG__CTCTACGGAGACAGGTGTAGCTCC
6._UF_667___
__CG__CTACGGAGACAGGTGTAGCTCC
7._UF_667___
__CG__CTACGG__ACAGGTGT______
8._UF_667___
__CG__CTACGG__ACAGGTGT______
9._UF_667___
__CG__CTACGG__ACAGGTGT______
10._UF_667___
__CG__CTACGG__ACAGGTGT______
11._UF_667___
__CG__CTACGG__ACAGGTGT______
12._UF_667___
__CG__CTACGG__ACAGGTGT______
13._UF_667___
______CTACGG__ACAGGTGT______
14._UF_667___
__CG__CTACGG__ACAGGTGT______
15._UF_667___
__CG__CTACGG__ACAGGTGT______
16._UF_667___
__CG__CTACGG__ACAGGTGT______
17._UF_667___
__GG__CTACGG__ACAGGTGT______
18._UF_667___
__CGCTCTAC__AGACAGGTGTAG____
19._UF_667___
AG____________ACAG__GTAG____
20._UF_667___
__CC__CTAAGG__ACAGGGGG______
21._UF_667___
AGCGAGAGACGGAGACAGACACAG____
22._UF_667___
AGCGAGAGACGGAGACAGACACAG____
23._UF_667___
GGGGAGAGAAGGGGCCAAACCCGG____
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
GGTTACAGACAAAGCCCGCTATACCTCT
1._UF_667___
GGTTACAGACAAAGCCCGCTATACCTCT
2._UF_667___
GGTTACAGACAAAGCCCGCTATACCTCT
3._UF_667___
GGTTACAGACAAAGCCCGCTATACCTCT
4._UF_667___
GGTTACAGACAAAGCCCGCTATACCTCT
5._UF_667___
GGTTACAGACAAAGCCCGCTATACCTCT
6._UF_667___
GGTTACAGACAAAGCCCGCTATACCTCT
7._UF_667___
GGTT__________CCCG______CTCT
8._UF_667___
GGTT__________CCCG______CTCT
9._UF_667___
GGTT__________CCCG______CTCT
10._UF_667___
GGTT__________CCCG______CTCT
11._UF_667___
GGTT__________CCCG______CTCT
12._UF_667___
GGTT__________CCCG______CTCT
13._UF_667___
GGTT__________CCCG______CTCT
14._UF_667___
AGTT__________CCCG______CTCT
15._UF_667___
AGTT__________CCCG______CTCT
16._UF_667___
AGTT__________CCCG______CTCT
17._UF_667___
AGTT__________CCCG______CTCT
18._UF_667___
______________CCCG____ACCT__
19._UF_667___
AG____________ACCG____AC____
20._UF_667___
AACT__________AACG______TTCC
21._UF_667___
__AAACAGACAA__CCCGAGATACAGAG
22._UF_667___
__AAACAGACAA__CCCGAGATACAGAG
23._UF_667___
__AGAAAAACAA__ACCCAGATCCAAAA
 85 86 87 88 89 90 91 92 93      
_Input profile
CTTTAGCTCTGTTTATGGX_XX_XX_XX_XX_X
1._UF_667___
CTTTAGCTCTGTTTATGGX_XX_XX_XX_XX_X
2._UF_667___
CTTTAGCTCTGTTTATGGX_XX_XX_XX_XX_X
3._UF_667___
CTTTAGCTCTGTTTATGGX_XX_XX_XX_XX_X
4._UF_667___
CTTTAGCTCTGTTTATGGX_XX_XX_XX_XX_X
5._UF_667___
CTTTAGCTCTGTTTATGGX_XX_XX_XX_XX_X
6._UF_667___
CTTTAGCTCTGTTTATGGX_XX_XX_XX_XX_X
7._UF_667___
CT__AG__CTGTTT____X_XX_XX_XX_XX_X
8._UF_667___
CT__AG__CTGTTT____X_XX_XX_XX_XX_X
9._UF_667___
CT__AG__CTGTTT____X_XX_XX_XX_XX_X
10._UF_667___
CT__AG__CTGTTT____X_XX_XX_XX_XX_X
11._UF_667___
CT__AG__CTGTTT____X_XX_XX_XX_XX_X
12._UF_667___
CT__AG__CTGTTT____X_XX_XX_XX_XX_X
13._UF_667___
CT__AG__CTGTTT____X_XX_XX_XX_XX_X
14._UF_667___
CT__AG__CTGTTT____X_XX_XX_XX_XX_X
15._UF_667___
CT__AG__CTGTTT____X_XX_XX_XX_XX_X
16._UF_667___
CT__AG__CTGTTT____X_XX_XX_XX_XX_X
17._UF_667___
CT__AG__CTGTTT____X_XX_XX_XX_XX_X
18._UF_667___
____AGCCCTGT______X_XX_XX_XX_XX_X
19._UF_667___
CT____CT__GT______X_XX_XX_XX_XX_X
20._UF_667___
CC__AG__CCTTTT____X_XX_XX_XX_XX_X
21._UF_667___
__AA____AGAAAAATGGX_XX_XX_XX_XX_X
22._UF_667___
__AA____AGAAAAATGGX_XX_XX_XX_XX_X
23._UF_667___
__AG____AGAAAGAAGGX_XX_XX_XX_XX_X

Input profile: UF_667 GC-01-029-2-06

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

1._UF_667 GC-01-029-2-06

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

2._UF_667 GC-01-029-2-06

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

3._UF_667 GC-01-029-2-06

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP2
 Mars, 2018

4._UF_667 GC-01-029-2-06

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

5._UF_667 GC-01-029-2-06

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11 > FP4
 Mars, 2018

6._UF_667 GC-01-029-2-06

identical
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

7._UF_667

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1206 2
 Dapeng Zhang, 2016

8._UF_667

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1206 5 > FP
 Dapeng Zhang, 2016

9._UF_667

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1206 1 > FP
 Dapeng Zhang, 2016

10._UF_667

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1206 10
 Dapeng Zhang, 2016

11._UF_667

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1206 7
 Dapeng Zhang, 2016

12._UF_667

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1206 3
 Dapeng Zhang, 2016

13._UF_667

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1206 11 > F
 Dapeng Zhang, 2016

14._UF_667

98.7 %
39 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

15._UF_667 RUQ_55

98.7 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

16._UF_667

98.7 %
39 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: C0244
 Dapeng Zhang, 2016

17._UF_667

97.4 %
39 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F466 T2
 Dapeng Zhang, 2016

18._UF_667 RUQ_55

96.3 %
41 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

19._UF_667 RUQ_55

90.5 %
21 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

20._UF_667

62.8 %
39 shared markers

Indonesian Coffee and Cocoa Research Institute (ICCRI), Indonesia
Location: KW 292 I-042
 Dapeng Zhang, 2016

21._UF_667 GC-01-29-2-6

56.3 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 6, Tree: 1 > FP1
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

22._UF_667 RUQ_55

56.3 %
79 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

23._UF_667 UF_667_Fld#_119_Plt#_1

39.9 %
79 shared markers

USDA-TARS, United States of America
Location: Field: 119, Tree: 1
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1165 10TcSNP429
11TcSNP75 12TcSNP891 13TcSNP122 14TcSNP316 15TcSNP521
16TcSNP860 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP944 49TcSNP1242 50TcSNP1383
51TcSNP547 52TcSNP776 53TcSNP1309 54TcSNP151 55TcSNP1520
56TcSNP799 57TcSNP899 58TcSNP226 59TcSNP1439 60TcSNP1442
61TcSNP193 62TcSNP25 63TcSNP364 64TcSNP144 65TcSNP230
66TcSNP560 67TcSNP723 68TcSNP731 69TcSNP701 70TcSNP1041
71TcSNP645 72TcSNP917 73Tcm003s01336581 74Tcm003s07402719 75Tcm001s00947643
76Tcm006s26664133 77Tcm002s20575712 78TcSNP529 79TcSNP1458 80TcSNP60
81TcSNP430 82TcSNP823 83TcSNP619 84TcSNP994 85TcSNP1144
86TcSNP1156 87TcSNP469 88TcSNP999 89TcSNP242 90TcSNP1253
91TcSNP1414 92TcSNP154 93TcSNP240