SNP Profiles of SCA 6   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
ATCCCCCCAGAATTCTTTAGTTTTTTAT
1._GC-01-026-2-03
ATCCCCCCAGAATTCTTTAGTTTTTTAT
2._GC-01-026-2-03
ATCCCCCCAGAATTCTTTAGTTTTTTAT
3._GC-01-026-2-03
ATCCCCCCAGAATTCTTTAGTTTTTTAT
4._GC-01-026-2-03
ATCCCCCCAGAATTCTTTAGTTTTTTAT
5._GC-01-026-2-03
ATCCCCCCAGAATTCTTTAGTTTTTTAT
6._GC-01-026-2-03
ATCCCCCCAGAATTCTTTAGTTTTTTAT
7._GC-01-026-2-03
ATCCCCCCAGAATTCTTTAGTTTTTTAT
8._GC-01-026-2-03
ATCCCCCCAGAATTCTTTAGTTTTTTAT
9._GC-01-026-2-03
ATCCCCCCAGAATTCTTTAGTTTTTTAT
10._GC-01-026-2-03
ATCCCCCCAGAATTCTTTAGTTTTTTAT
11._GC-01-026-2-03
ATCCCCCCAGAATTCTTTAGTTTTTTAT
12._SCA_6
ATCCCCCC______CTTTAG__TT____
13._SCA_6
ATCCCCCC______CTTTAG__TT____
14._SCA_6
ATCCCCCC______CTTTAG__TT____
15._SCA_6
ATCCCCCC______CTTTAG__TT____
16._SCA_6
ATCCCCCC______CTTTAG__TT____
17._SCA_6
ATCCCCCC______CTTTAG__TT____
18._SCA_6
ATCCCCCC______CTTTAG__TT____
19._SCA_6
ATCCCCCC______CTTTAG__TT____
20._SCA_6
ATCCCCCC______CTTTAG__TT____
21._SCA_6
ATCCCCCC______CTTTAG__TT____
22._SCA_6
ATCCCCCC______CTTTAG__TT____
23._SCA_6
ATCCCCCC______CTTTAG__TT____
24._SCA_6
ATCCCCCC______CTTTAG__TT____
25._SCA_6
ATCCCCCC______CTTTAG__TT____
26._SCA_6
ATCCCCCC______CTTTAG__TT____
27._SCA_6
ATCCCCCC______CTTTAG__TT____
28._SCA_6
ATCCCCCC______CTTTAG__TT____
29._GC-01-026-2-03
ATCCCCCCAGAATTCTTTAGTTTTTTAT
30._RUQ_234
____CCCC______CT____TTTT____
31._RUQ_234
ATCCCCCC______CTTTAG__TT____
32._SCA_6
ATCCCCCC______CTTTAG__TT____
33._SCA_6
ATCCCCCC______CTTTAG__TT____
34._SCA_6
ATCCCCCC______CTTTAG__TT____
35._SCA_6
ATCCCCCC______CTTTAG__TT____
36._GC-01-26-2-03
ATCCCCCCAGAATTCTTTAGTTTTTTAT
37._GC-01-26-2-03
ATCCCCCCAGAATTCTTTAGTTTTTTAT
38._GC-01-26-2-03
ATCCCCCCAGAATTCTTTAGTTTTTTAT
39._GC-01-26-2-03
ATCCCCCCAGAATTCTTTAGTTTTTTAT
40._RUQ_234B
______CC____________________
41._RUQ_234
______CC____________________
42._SCA_6
ATCCCCCC______CTTTAG__TT____
43._SCA_6
ATCCCCCC______CCTTAG__TT____
44._SCA6
______CC______CT______TT____
45._RUQ_234
ATCC__CCAGAAAAAG__AGAAAAAAAT
46._MITC-000343
ATCC__CCAGAAAAAG__AGAAAAAAAT
47._MITC-000344
ATCC__CCAGAAAAAG__AGAAAAAAAT
48._MITC-000345
ATCC__CCAGAAAAAG__AGAAAAAAAT
49._MITC-000347
ATCC__CCAGAAAAAG__AGAAAAAAAT
50._MITC-000348
ATCC__CCAGAAAAAG__AGAAAAAAAT
51._MITC-000349
ATCC__CCAGAAAAAG__AGAAAAAAAT
52._MITC-000376
ATCC__CCAGAAAAAG__AGAAAAAAAT
53._MITC-000452
ATCC__CCAGAAAAAG__AGAAAAAAAT
54._SCA_6_TC_(Penn_State)_Fld#_197_Plt#_6
ATAC__ACAGAGAGGG__AGAAAGAGAT
55._SCA_6_Fld#_16_Plt#_1
ATAC__ACAGAGAGGG__AGAAAGAGAT
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAAAGGCCCGCCCCAACTGGAAAAGGCC
1._GC-01-026-2-03
AAAAGGCCCGCCCCAACTGGAAAAGGCC
2._GC-01-026-2-03
AAAAGGCCCGCCCCAACTGGAAAAGGCC
3._GC-01-026-2-03
AAAAGGCCCGCCCCAACTGGAAAAGGCC
4._GC-01-026-2-03
AAAAGGCCCGCCCCAACTGGAAAAGGCC
5._GC-01-026-2-03
AAAAGGCCCGCCCCAACTGGAAAAGGCC
6._GC-01-026-2-03
AAAAGGCCCGCCCCAACTGGAAAAGGCC
7._GC-01-026-2-03
AAAAGGCCCGCCCCAACTGGAAAAGGCC
8._GC-01-026-2-03
AAAAGGCCCGCCCCAACTGGAAAAGGCC
9._GC-01-026-2-03
AAAAGGCCCGCCCCAACTGGAAAAGGCC
10._GC-01-026-2-03
AAAAGGCCCGCCCCAACTGG__AAGGCC
11._GC-01-026-2-03
AAAAGGCCCGCCCCAACTGGAAAAGGCC
12._SCA_6
____GG____CC________AAAA__CC
13._SCA_6
____GG____CC________AAAA__CC
14._SCA_6
____GG____CC________AAAA__CC
15._SCA_6
____GG____CC________AAAA__CC
16._SCA_6
____GG____CC________AAAA__CC
17._SCA_6
____GG____CC________AAAA__CC
18._SCA_6
____GG____CC________AAAA__CC
19._SCA_6
____GG____CC________AAAA__CC
20._SCA_6
____GG____CC________AAAA__CC
21._SCA_6
____GG____CC________AAAA__CC
22._SCA_6
____GG____CC________AAAA__CC
23._SCA_6
____GG____CC________AAAA__CC
24._SCA_6
____GG____CC________AAAA__CC
25._SCA_6
____GG____CC________AAAA__CC
26._SCA_6
____GG____CC________AAAA__CC
27._SCA_6
____GG____CC________AAAA__CC
28._SCA_6
____GG____CC__________AA__CC
29._GC-01-026-2-03
AAAAGGCCCGCCCCAACTGGAAAAGGCC
30._RUQ_234
________CG________GG__AAGGCC
31._RUQ_234
____GG____CC________AAAA__CC
32._SCA_6
____GG____CC________AAAA__CC
33._SCA_6
____GG____CC________AAAA__CC
34._SCA_6
____GG____CC________AAAA__CC
35._SCA_6
____GG____CC________AAAA__CC
36._GC-01-26-2-03
AAAAGGCCCGCCCCAACTGGAAAAGGCC
37._GC-01-26-2-03
AAAAGGCCCGCCCCAACTGGAAAAGGCC
38._GC-01-26-2-03
AAAAGGCCCGCCCCAACTGGAAAAGGCC
39._GC-01-26-2-03
AAAAGGCCCGCCCCAACTGGAAAAGGCC
40._RUQ_234B
____GGCC__________________CC
41._RUQ_234
____GGCC__________________CC
42._SCA_6
____GG____CC________AAAA__CC
43._SCA_6
____GG____CC________AAAA__CC
44._SCA6
__AA____CG__CC____GG__AAGGGG
45._RUQ_234
AAAAGGGG__CCGGAAAGGGAAAACCGG
46._MITC-000343
AAAAGGGG__CCGGAAAGGGAAAACCGG
47._MITC-000344
AAAAGGGG__CCGGAAAGGGAAAACCGG
48._MITC-000345
AAAAGGGG__CCGGAAAGGGAAAACCGG
49._MITC-000347
AAAAGGGG__CCGGAAAGGGAAAACCGG
50._MITC-000348
AAAAGGGG__CCGGAAAGGGAAAACCGG
51._MITC-000349
AAAAGGGG__CCGGAAAGGGAAAACCGG
52._MITC-000376
AAAAGGGG__CCGGAAAGGGAAAACCGG
53._MITC-000452
AAAAGGGG__CCGGAAAGGGAAAACCGG
54._SCA_6_TC_(Penn_State)_Fld#_197_Plt#_6
ACAGAGCG__CCAGAGAAGGATAACGCG
55._SCA_6_Fld#_16_Plt#_1
ACAGAGCG__CCAGAGAAGGATAACGCG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
TTTTTTGGCGCCAAGGTTTTAGCCGGCG
1._GC-01-026-2-03
TTTTTTGGCGCCAAGGTTTTAGCCGGCG
2._GC-01-026-2-03
TTTTTTGGCGCCAAGGTTTTAGCCGGCG
3._GC-01-026-2-03
TTTTTTGGCGCCAAGGTTTTAGCCGGCG
4._GC-01-026-2-03
TTTTTTGGCGCCAAGGTTTTAGCCGGCG
5._GC-01-026-2-03
TTTTTTGGCGCCAAGGTTTTAGCCGGCG
6._GC-01-026-2-03
TTTTTTGGCGCCAAGGTTTTAGCCGGCG
7._GC-01-026-2-03
TTTTTTGGCGCCAAGGTTTTAGCCGGCG
8._GC-01-026-2-03
TTTTTTGGCGCCAAGGTTTTAGCCGGCG
9._GC-01-026-2-03
TTTTTTGGCGCCAAGGTTTTAGCCGGCG
10._GC-01-026-2-03
TTTTTTGGCGCCAAGGTTTTAGCCGGCG
11._GC-01-026-2-03
TTTTTTGGCGCCAAGGTTTTAGCCGGCG
12._SCA_6
TT______CG__AAGG____AG______
13._SCA_6
TT______CG__AAGG____AG______
14._SCA_6
TT______CG__AAGG____AG______
15._SCA_6
TT______CG__AAGG____AG______
16._SCA_6
TT______CG__AAGG____AG______
17._SCA_6
TT______CG__AAGG____AG______
18._SCA_6
TT______CG__AAGG____AG______
19._SCA_6
TT______CG__AAGG____AG______
20._SCA_6
TT______CG__AAGG____AG______
21._SCA_6
TT______CG__AAGG____AG______
22._SCA_6
TT______CG__AAGG____AG______
23._SCA_6
TT______CG__AAGG____AG______
24._SCA_6
TT______CG__AAGG____AG______
25._SCA_6
TT______CG__AAGG____AG______
26._SCA_6
TT______CG__AAGG____AG______
27._SCA_6
TT______CG__AAGG____AG______
28._SCA_6
TT______CG__AAGG____AG______
29._GC-01-026-2-03
TTTTTTGGCGCCAAGGTTTTAGCCGGCG
30._RUQ_234
______GGCGCCAAGG____AGCC____
31._RUQ_234
TT______CG__AAGG____AG______
32._SCA_6
TT______CG__AAGG____AG______
33._SCA_6
TT______CG__AAGG____AG______
34._SCA_6
TT______CG__AAGG____AG______
35._SCA_6
TT______CG__AAGG____AG______
36._GC-01-26-2-03
TTTTTTGGCGCCAAGGTTTTAGCCGGCG
37._GC-01-26-2-03
TTTTTTGGCGCCAAGGTTTTAGCCGGCG
38._GC-01-26-2-03
TTTTTTGGCGCCAAGGTTTTAGCCGGCG
39._GC-01-26-2-03
TTTTTTGGCGCCAAGGTTTTAGCCGGCG
40._RUQ_234B
________CG__AA________CC____
41._RUQ_234
________CG__AA________CC____
42._SCA_6
TT______CG__AAGG____AG______
43._SCA_6
TT______CG__AAGG____AG______
44._SCA6
______GGCG________TT__CC____
45._RUQ_234
TTAAAAGGCGCCAACCAAAAAGGGGGCG
46._MITC-000343
TTAAAAGGCGCCAACCAAAAAGGGGGCG
47._MITC-000344
TTAAAAGGCGCCAACCAAAAAGGGGGCG
48._MITC-000345
TTAAAAGGCGCCAACCAAAAAGGGGGCG
49._MITC-000347
TTAAAAGGCGCCAACCAAAAAGGGGGCG
50._MITC-000348
TTAAAAGGCGCCAACCAAAAAGGGGGCG
51._MITC-000349
TTAAAAGGCGCCAACCAAAAAGGGGGCG
52._MITC-000376
TTAAAAGGCGCCAACCAAAAAGGGGGCG
53._MITC-000452
TTAAAAGGCGCCAACCAAAAAGGGGGCG
54._SCA_6_TC_(Penn_State)_Fld#_197_Plt#_6
ATAAACAGCGCCAGACACAAAGAGAGGG
55._SCA_6_Fld#_16_Plt#_1
ATAAACAGCGCCAGACACAAAGAGAGGG
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
GGTTCTAGAAAACCAAAAAAGGTTCCTT
1._GC-01-026-2-03
GGTTCTAGAAAACCAAAAAAGGTTCCTT
2._GC-01-026-2-03
GGTTCTAGAAAACCAAAAAAGGTTCCTT
3._GC-01-026-2-03
GGTTCTAGAAAACCAAAAAAGGTTCCTT
4._GC-01-026-2-03
GGTTCTAGAAAACCAAAAAAGGTTCCTT
5._GC-01-026-2-03
GGTTCTAGAAAACCAAAAAAGGTTCCTT
6._GC-01-026-2-03
GGTTCTAGAAAACCAAAAAAGGTTCCTT
7._GC-01-026-2-03
GGTTCTAGAAAACCAAAAAAGGTTCCTT
8._GC-01-026-2-03
GGTTCTAGAAAACCAAAAAAGGTTCCTT
9._GC-01-026-2-03
GGTTCTAGAAAACCAAAAAAGGTTCCTT
10._GC-01-026-2-03
GGTTCTAGAAAACCAAAAAAGGTTCCTT
11._GC-01-026-2-03
GGTTCTAGAAAACCAAAAAAGGTTCCTT
12._SCA_6
____CT________________TTCC__
13._SCA_6
____CT________________TTCC__
14._SCA_6
____CT________________TTCC__
15._SCA_6
____CT________________TTCC__
16._SCA_6
____CT________________TTCC__
17._SCA_6
____CT________________TTCC__
18._SCA_6
____CT________________TTCC__
19._SCA_6
____CT________________TTCC__
20._SCA_6
____CT________________TTCC__
21._SCA_6
____CT________________TTCC__
22._SCA_6
____CT________________TTCC__
23._SCA_6
____CT________________TTCC__
24._SCA_6
____CT________________TTCC__
25._SCA_6
____CT________________TTCC__
26._SCA_6
____CT________________TTCC__
27._SCA_6
____CT________________TTCC__
28._SCA_6
____CT________________TTCC__
29._GC-01-026-2-03
GGTTCTAGGGAACCAAAAAAGGTTCCTT
30._RUQ_234
GGTT____AA____________TT__TT
31._RUQ_234
____CT________________TTCC__
32._SCA_6
____CT________________TTCC__
33._SCA_6
____CT________________TTCC__
34._SCA_6
____CT________________TTCC__
35._SCA_6
____CT________________TTCC__
36._GC-01-26-2-03
GGTTCTAGAAAACCAAAAAAGGTTCCTT
37._GC-01-26-2-03
GGTTCTAGAAAACCAAAAAAGGTTCCTT
38._GC-01-26-2-03
GGTTCTAGAAAACCAAAAAAGGTTCCTT
39._GC-01-26-2-03
GGTTCTAG__AACCAAAAAAGGTTCCTT
40._RUQ_234B
________AA__________________
41._RUQ_234
________AA__________________
42._SCA_6
____CT________________TTCC__
43._SCA_6
____TT________________TTCC__
44._SCA6
__TT__AG______________TT____
45._RUQ_234
CC__AG__AAAAGG__AAAACCAAGGAA
46._MITC-000343
CC__AG__AAAAGG__AAAACCAAGGAA
47._MITC-000344
CC__AG__AAAAGG__AAAACCAAGGAA
48._MITC-000345
CC__AG__AAAAGG__AAAACCAAGGAA
49._MITC-000347
CC__AG__AAAAGG__AAAACCAAGGAA
50._MITC-000348
CC__AG__AAAAGG__AAAACCAAGGAA
51._MITC-000349
CC__AG__AAAAGG__AAAACCAAGGAA
52._MITC-000376
CC__AG__AAAAGG__AAAACCAAGGAA
53._MITC-000452
CC__AG__AAAAGG__AAAACCAAGGAA
54._SCA_6_TC_(Penn_State)_Fld#_197_Plt#_6
CC__GG__AGAAGG__AGAGACAGAGAA
55._SCA_6_Fld#_16_Plt#_1
CC__GG__AGAAGG__AGAGACAGAGAA
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
GGCCCCCTCCCCGGACAAGGGGAACTCG
1._GC-01-026-2-03
GGCCCCCTCCCCGGACAAGGGGAACTCG
2._GC-01-026-2-03
GGCCCCCTCCCCGGACAAGGGGAACTCG
3._GC-01-026-2-03
GGCCCCCTCCCCGGACAAGGGGAACTCG
4._GC-01-026-2-03
GGCCCCCTCCCCGGACAAGGGGAACTCG
5._GC-01-026-2-03
GGCCCCCTCCCCGGACAAGGGGAACTCG
6._GC-01-026-2-03
GGCCCCCTCCCCGGACAAGGGGAACTCG
7._GC-01-026-2-03
GGCCCCCTCCCCGGACAAGGGGAACTCG
8._GC-01-026-2-03
GGCCCCCTCCCCGGACAAGGGGAACTCG
9._GC-01-026-2-03
GGCCCCCTCCCCGGACAAGGGGAACTCG
10._GC-01-026-2-03
GGCCCCCTCCCCGGACAAGGGGAACTCG
11._GC-01-026-2-03
GGCCCCCTCCCCGGACAAGGGGAA__CG
12._SCA_6
__CC__CTCCCC__ACAAGGGG______
13._SCA_6
__CC__CTCCCC__ACAAGGGG______
14._SCA_6
__CC__CTCCCC__ACAAGGGG______
15._SCA_6
__CC__CTCCCC__ACAAGGGG______
16._SCA_6
__CC__CTCCCC__ACAAGGGG______
17._SCA_6
__CC__CTCCCC__ACAAGGGG______
18._SCA_6
__CC__CTCCCC__ACAAGGGG______
19._SCA_6
__CC__CTCCCC__ACAAGGGG______
20._SCA_6
__CC__CTCCCC__ACAAGGGG______
21._SCA_6
__CC__CTCCCC__ACAAGGGG______
22._SCA_6
__CC__CTCCCC__ACAAGGGG______
23._SCA_6
__CC__CTCCCC__ACAAGGGG______
24._SCA_6
__CC__CTCCCC__ACAAGGGG______
25._SCA_6
__CC__CTCCCC__ACAAGGGG______
26._SCA_6
__CC__CTCCCC__ACAAGGGG______
27._SCA_6
__CC__CTCCCC__ACAAGGGG______
28._SCA_6
__CC__CTCCCC__ACAAGGGG______
29._GC-01-026-2-03
GGCCCCCTCCCCGGACAAGGGGAACTCG
30._RUQ_234
__CCCCCTCC__GGCCAAGGGGAA____
31._RUQ_234
__CC__CTCCCC__ACAAGGGG______
32._SCA_6
__CC__CTCCCC__ACAAGGGG______
33._SCA_6
__CC__CTCCCC__ACAAGGGG______
34._SCA_6
__CC__CTCCCC__ACAAGGGG______
35._SCA_6
__CC__CTCCCC__ACAAGGGG______
36._GC-01-26-2-03
GGCCCCCTCCCCGGACAAGGGGAACTCG
37._GC-01-26-2-03
GGCCCCCTCCCCGGACAAGGGGAACTCG
38._GC-01-26-2-03
GGCCCCCTCCCCGGACAAGGGGAACTCG
39._GC-01-26-2-03
GGCCCCCTCCCCGGACAAGGGGAACTCG
40._RUQ_234B
GG____________ACAA__GGAA____
41._RUQ_234
GG____________ACAA__GGAA____
42._SCA_6
__CC__CTCCCC__ACAAGGGG______
43._SCA_6
__CC__TTCCCC__ACAAGGGG______
44._SCA6
__GGCC__CC__GGCCAA________CG
45._RUQ_234
GGGGGGAGCCCCGGACAACCCCAA____
46._MITC-000343
GGGGGGAGCCCCGGACAACCCCAA____
47._MITC-000344
GGGGGGAGCCCCGGACAACCCCAA____
48._MITC-000345
GGGGGGAGCCCCGGACAACCCCAA____
49._MITC-000347
GGGGGGAGCCCCGGACAACCCCAA____
50._MITC-000348
GGGGGGAGCCCCGGACAACCCCAA____
51._MITC-000349
GGGGGGAGCCCCGGACAACCCCAA____
52._MITC-000376
GGGGGGAGCCCCGGACAACCCCAA____
53._MITC-000452
GGGGGGAGCCCCGGACAACCCCAA____
54._SCA_6_TC_(Penn_State)_Fld#_197_Plt#_6
AGGGAGGGACCGGGAAAAACCCAG____
55._SCA_6_Fld#_16_Plt#_1
AGGGAGGGACCGGGAAAAACCCAG____
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
AACCCCGGCCCCAAAACCCCAACCTTCC
1._GC-01-026-2-03
AACCCCGGCCCCAAAACCCCAACCTTCC
2._GC-01-026-2-03
AACCCCGGCCCCAAAACCCCAACCTTCC
3._GC-01-026-2-03
AACCCCGGCCCCAAAACCCCAACCTTCC
4._GC-01-026-2-03
AACCCCGGCCCCAAAACCCCAACCTTCC
5._GC-01-026-2-03
AACCCCGGCCCCAAAACCCCAACCTTCC
6._GC-01-026-2-03
AACCCCGGCCCCAAAACCCCAACCTTCC
7._GC-01-026-2-03
AACCCCGGCCCCAAAACCCCAACCTTCC
8._GC-01-026-2-03
AACCCCGGCCCCAAAACCCCAACCTTCC
9._GC-01-026-2-03
AACCCCGGCCCCAAAACCCCAACCTTCC
10._GC-01-026-2-03
AACCCCGGCCCCAAAACCCCAACCTTCC
11._GC-01-026-2-03
AACCCCGGCCCCAAAACCCCAACCTTCC
12._SCA_6
AACC__________AACC______TTCC
13._SCA_6
AACC__________AACC______TTCC
14._SCA_6
AACC__________AACC______TTCC
15._SCA_6
AACC__________AACC______TTCC
16._SCA_6
AACC__________AACC______TTCC
17._SCA_6
AACC__________AACC______TTCC
18._SCA_6
AACC__________AACC______TTCC
19._SCA_6
AACC__________AACC______TTCC
20._SCA_6
AACC__________AACC______TTCC
21._SCA_6
AACC__________AACC______TTCC
22._SCA_6
AACC__________AACC______TTCC
23._SCA_6
AACC__________AACC______TTCC
24._SCA_6
AACC__________AACC______TTCC
25._SCA_6
AACC__________AACC______TTCC
26._SCA_6
AACC__________AACC______TTCC
27._SCA_6
AACC__________AACC______TTCC
28._SCA_6
AACC__________AACC______TTCC
29._GC-01-026-2-03
AACCCCGGCCCCAAAACCCCAACCTTCC
30._RUQ_234
______________AACC____CCTT__
31._RUQ_234
AGCC__________AACC______TTCC
32._SCA_6
AGCC__________AACC______TTCC
33._SCA_6
AGCC__________AACC______TTCC
34._SCA_6
AGCC__________AACC______TTCC
35._SCA_6
AGCC__________AACC______TTCC
36._GC-01-26-2-03
AACCCCGGCCCCAAAACCCCAACCTTCC
37._GC-01-26-2-03
AACCCCGGCCCCAAAACCCCAACCTTCC
38._GC-01-26-2-03
AACCCCGGCCCCAAAACCCCAACCTTCC
39._GC-01-26-2-03
AACCCCGGCCCCAAAACCCCAACCTTCC
40._RUQ_234B
AG____________AACC____CC____
41._RUQ_234
AG____________AACC____CC____
42._SCA_6
AGCC__________AACC______TTCC
43._SCA_6
AGCT__________AACC______TTCC
44._SCA6
________________GG________CC
45._RUQ_234
__GGCCGGCCCC__AAGGGGAACCAAGG
46._MITC-000343
__GGCCGGCCCC__AAGGGGAACCAAGG
47._MITC-000344
__GGCCGGCCCC__AAGGGGAACCAAGG
48._MITC-000345
__GGCCGGCCCC__AAGGGGAACCAAGG
49._MITC-000347
__GGCCGGCCCC__AAGGGGAACCAAGG
50._MITC-000348
__GGCCGGCCCC__AAGGGGAACCAAGG
51._MITC-000349
__GGCCGGCCCC__AAGGGGAACCAAGG
52._MITC-000376
__GGCCGGCCCC__AAGGGGAACCAAGG
53._MITC-000452
__GGCCGGCCCC__AAGGGGAACCAAGG
54._SCA_6_TC_(Penn_State)_Fld#_197_Plt#_6
__AGACAGCCAC__ACCGGGATACAAAG
55._SCA_6_Fld#_16_Plt#_1
__AGACAGCCAC__ACCGGGATACAAAG
 85 86 87 88 89 90 91 92 93      
_Input profile
CCCCGGCCCTGGCCTTAGX_XX_XX_XX_XX_X
1._GC-01-026-2-03
CCCCGGCCCTGGCCTTAGX_XX_XX_XX_XX_X
2._GC-01-026-2-03
CCCCGGCCCTGGCCTTAGX_XX_XX_XX_XX_X
3._GC-01-026-2-03
CCCCGGCCCTGGCCTTAGX_XX_XX_XX_XX_X
4._GC-01-026-2-03
CCCCGGCCCTGGCCTTAGX_XX_XX_XX_XX_X
5._GC-01-026-2-03
CCCCGGCCCTGGCCTTAGX_XX_XX_XX_XX_X
6._GC-01-026-2-03
CCCCGGCCCTGGCCTTAGX_XX_XX_XX_XX_X
7._GC-01-026-2-03
CCCCGGCCCTGGCCTTAGX_XX_XX_XX_XX_X
8._GC-01-026-2-03
CCCCGGCCCTGGCCTTAGX_XX_XX_XX_XX_X
9._GC-01-026-2-03
CCCCGGCCCTGGCCTTAGX_XX_XX_XX_XX_X
10._GC-01-026-2-03
CCCCGGCCCTGGCCTTAGX_XX_XX_XX_XX_X
11._GC-01-026-2-03
CCCCGGCCCTGGCCTTAGX_XX_XX_XX_XX_X
12._SCA_6
CC__GG__CTGGCC____X_XX_XX_XX_XX_X
13._SCA_6
CC__GG__CTGGCC____X_XX_XX_XX_XX_X
14._SCA_6
CC__GG__CTGGCC____X_XX_XX_XX_XX_X
15._SCA_6
CC__GG__CTGGCC____X_XX_XX_XX_XX_X
16._SCA_6
CC__GG__CTGGCC____X_XX_XX_XX_XX_X
17._SCA_6
CC__GG__CTGGCC____X_XX_XX_XX_XX_X
18._SCA_6
CC__GG__CTGGCC____X_XX_XX_XX_XX_X
19._SCA_6
CC__GG__CTGGCC____X_XX_XX_XX_XX_X
20._SCA_6
CC__GG__CTGGCC____X_XX_XX_XX_XX_X
21._SCA_6
CC__GG__CTGGCC____X_XX_XX_XX_XX_X
22._SCA_6
CC__GG__CTGGCC____X_XX_XX_XX_XX_X
23._SCA_6
CC__GG__CTGGCC____X_XX_XX_XX_XX_X
24._SCA_6
CC__GG__CTGGCC____X_XX_XX_XX_XX_X
25._SCA_6
CC__GG__CTGGCC____X_XX_XX_XX_XX_X
26._SCA_6
CC__GG__CTGGCC____X_XX_XX_XX_XX_X
27._SCA_6
CC__GG__CTGG______X_XX_XX_XX_XX_X
28._SCA_6
CC__GG__CTGGCC____X_XX_XX_XX_XX_X
29._GC-01-026-2-03
CCCCGGCCCTGGCCTTAGX_XX_XX_XX_XX_X
30._RUQ_234
____GGCCCTGG______X_XX_XX_XX_XX_X
31._RUQ_234
CC__GG__CTGGCC____X_XX_XX_XX_XX_X
32._SCA_6
CC__GG__CTGGCC____X_XX_XX_XX_XX_X
33._SCA_6
CC__GG__CTGGCC____X_XX_XX_XX_XX_X
34._SCA_6
CC__GG__CTGGCC____X_XX_XX_XX_XX_X
35._SCA_6
CC__GG__CTGGCC____X_XX_XX_XX_XX_X
36._GC-01-26-2-03
CCCCGGCCCTGGCCCCCCX_XX_XX_XX_XX_X
37._GC-01-26-2-03
CCCCGGCCCTGGCCCCCCX_XX_XX_XX_XX_X
38._GC-01-26-2-03
CCCCGGCCCTGG__CCCCX_XX_XX_XX_XX_X
39._GC-01-26-2-03
CCCCGGCCCTGGCCCCCCX_XX_XX_XX_XX_X
40._RUQ_234B
CC____CC__GG______X_XX_XX_XX_XX_X
41._RUQ_234
CC____CC__GG______X_XX_XX_XX_XX_X
42._SCA_6
CC__GG__TTGGCC____X_XX_XX_XX_XX_X
43._SCA_6
CC__GG__TTGGCC____X_XX_XX_XX_XX_X
44._SCA6
__________________X_XX_XX_XX_XX_X
45._RUQ_234
__GG____AGCCGGAAAGX_XX_XX_XX_XX_X
46._MITC-000343
__GG____AGCCGGAAAGX_XX_XX_XX_XX_X
47._MITC-000344
__GG____AGCCGGAAAGX_XX_XX_XX_XX_X
48._MITC-000345
__GG____AGCCGGAAAGX_XX_XX_XX_XX_X
49._MITC-000347
__GG____AGCCGGAAAGX_XX_XX_XX_XX_X
50._MITC-000348
__GG____AGCCGGAAAGX_XX_XX_XX_XX_X
51._MITC-000349
__GG____AGCCGGAAAGX_XX_XX_XX_XX_X
52._MITC-000376
__GG____AGCCGGAAAGX_XX_XX_XX_XX_X
53._MITC-000452
__GG____AGCCGGAAAGX_XX_XX_XX_XX_X
54._SCA_6_TC_(Penn_State)_Fld#_197_Plt#_6
__GG____GGACAGATAGX_XX_XX_XX_XX_X
55._SCA_6_Fld#_16_Plt#_1
__GG____GGACAGATAGX_XX_XX_XX_XX_X

Input profile: SCA_6 GC-01-026-2-03

 
 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

1._SCA_6 GC-01-026-2-03

identical
93 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

2._SCA_6 GC-01-026-2-03

identical
93 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

3._SCA_6 GC-01-026-2-03

identical
93 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

4._SCA_6 GC-01-026-2-03

identical
93 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

5._SCA_6 GC-01-026-2-03

identical
93 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

6._SCA_6 GC-01-026-2-03

identical
93 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

7._SCA_6 GC-01-026-2-03

identical
93 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

8._SCA_6 GC-01-026-2-03

identical
93 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

9._SCA_6 GC-01-026-2-03

identical
93 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: Dead
 Mars, 2018

10._SCA_6 GC-01-026-2-03

identical
92 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

11._SCA_6 GC-01-026-2-03

identical
92 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

12._SCA_6

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1203 9
 Dapeng Zhang, 2016

13._SCA_6

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1203 16 > F
 Dapeng Zhang, 2016

14._SCA_6

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1203 11 > F
 Dapeng Zhang, 2016

15._SCA_6

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1203 14
 Dapeng Zhang, 2016

16._SCA_6

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1203 13
 Dapeng Zhang, 2016

17._SCA_6

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1203 10
 Dapeng Zhang, 2016

18._SCA_6

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1203 7 > FP
 Dapeng Zhang, 2016

19._SCA_6

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1203 8
 Dapeng Zhang, 2016

20._SCA_6

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1203 6
 Dapeng Zhang, 2016

21._SCA_6

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1203 5
 Dapeng Zhang, 2016

22._SCA_6

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1203 1
 Dapeng Zhang, 2016

23._SCA_6

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1203 2
 Dapeng Zhang, 2016

24._SCA_6

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1203 2
 Dapeng Zhang, 2016

25._SCA_6

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1203 3
 Dapeng Zhang, 2016

26._SCA_6

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1203 4
 Dapeng Zhang, 2016

27._SCA_6

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1203 1 > FP
 Dapeng Zhang, 2016

28._SCA_6

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1203 15
 Dapeng Zhang, 2016

29._SCA_6 GC-01-026-2-03

98.9 %
93 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

30._SCA_6 RUQ_234

98.8 %
40 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

31._SCA_6 RUQ_234

98.8 %
40 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

32._SCA_6

98.8 %
40 shared markers

 View  View all  Clone  Any
Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P76 278
 Dapeng Zhang, 2016

33._SCA_6

98.8 %
40 shared markers

 View  View all  Clone  Any
Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P75 279
 Dapeng Zhang, 2016

34._SCA_6

98.8 %
40 shared markers

 View  View all  Clone  Any
Malaysian Cocoa Board (MCB), Malaysia
Location: C0267
 Dapeng Zhang, 2016

35._SCA_6

98.8 %
40 shared markers

 View  View all  Clone  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 644
 Dapeng Zhang, 2016

36._SCA_6 GC-01-26-2-03

97.8 %
93 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 3, Tree: PL16
Notes: PL16 FP4
 Mars, 2018

37._SCA_6 GC-01-26-2-03

97.8 %
93 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 3, Tree: PL7
Notes: PL7 FP3
 Mars, 2018

38._SCA_6 GC-01-26-2-03

97.8 %
92 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 3, Tree: PL1
Notes: PL1 FP1
 Mars, 2018

39._SCA_6 GC-01-26-2-03

97.8 %
92 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 3, Tree: PL11
Notes: PL11 FP2
 Mars, 2018

40._SCA_6 RUQ_234B

97.5 %
20 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

41._SCA_6 RUQ_234

97.5 %
20 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 
View Data
Sca
0.997

42._SCA_6

97.5 %
40 shared markers

 View  View all  Clone  Any
Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

43._SCA_6

92.5 %
40 shared markers

 View  View all  Clone  Any
Indonesian Coffee and Cocoa Research Institute (ICCRI), Indonesia
Location: KW 268 I-022
 Dapeng Zhang, 2016

44._SCA_6 SCA6

86.5 %
26 shared markers

 View  View all  Clone  Any
Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

45._SCA_6 RUQ_234

52.5 %
80 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

46._SCA_6 MITC-000343

52.5 %
80 shared markers

 View  View all  Clone  Any
USDA-SHRS, United States of America
 Mars, 2018

47._SCA_6 MITC-000344

52.5 %
80 shared markers

 View  View all  Clone  Any
USDA-SHRS, United States of America
 Mars, 2018

48._SCA_6 MITC-000345

52.5 %
80 shared markers

 View  View all  Clone  Any
USDA-SHRS, United States of America
 Mars, 2018

49._SCA_6 MITC-000347

52.5 %
80 shared markers

 View  View all  Clone  Any
USDA-SHRS, United States of America
 Mars, 2018

50._SCA_6 MITC-000348

52.5 %
80 shared markers

 View  View all  Clone  Any
USDA-SHRS, United States of America
 Mars, 2018

51._SCA_6 MITC-000349

52.5 %
80 shared markers

 View  View all  Clone  Any
USDA-SHRS, United States of America
 Mars, 2018

52._SCA_6 MITC-000376

52.5 %
80 shared markers

 View  View all  Clone  Any
USDA-SHRS, United States of America
 Mars, 2018

53._SCA_6 MITC-000452

52.5 %
80 shared markers

 View  View all  Clone  Any
USDA-SHRS, United States of America
 Mars, 2018

54._SCA_6 SCA_6_TC_(Penn_State)_Fld#_197_Plt#_6

38.8 %
80 shared markers

 View  View all  Clone  Any
USDA-TARS, United States of America
Location: Field: 197, Tree: 6
Notes: TARS_Cacao_collection
 Mars, 2018

55._SCA_6 SCA_6_Fld#_16_Plt#_1

38.8 %
80 shared markers

 View  View all  Clone  Any
USDA-TARS, United States of America
Location: Field: 16, Tree: 1
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP1096 8TcSNP1060 9TcSNP1165 10TcSNP429
11TcSNP75 12TcSNP891 13TcSNP122 14TcSNP316 15TcSNP521
16TcSNP860 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP151 55TcSNP1520
56TcSNP799 57TcSNP899 58TcSNP226 59TcSNP1439 60TcSNP1442
61TcSNP193 62TcSNP25 63TcSNP364 64TcSNP144 65TcSNP230
66TcSNP560 67TcSNP723 68TcSNP731 69TcSNP701 70TcSNP1041
71TcSNP645 72TcSNP917 73Tcm003s01336581 74Tcm003s07402719 75Tcm001s00947643
76Tcm006s26664133 77Tcm002s20575712 78TcSNP529 79TcSNP1458 80TcSNP60
81TcSNP430 82TcSNP823 83TcSNP619 84TcSNP994 85TcSNP1144
86TcSNP1156 87TcSNP469 88TcSNP999 89TcSNP242 90TcSNP1253
91TcSNP1414 92TcSNP154 93TcSNP240