SNP Profiles of SIAL-169   View Data

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 Key

 1234567891011121314
_Input profile
AAAATTACGGGGCCCCCCCCGGTTCCCT
1._GC-01-041-2-18
AAAATTACGGGGCCCCCCCCGGTTCCCT
2._GC-01-041-2-18
AAAATTACGGGGCCCCCCCCGGTTCCCT
3._GC-01-041-2-18
AAAATTACGGGGCCCCCCCCGGTTCCCT
4._GC-01-041-2-18
AAAATTACGGGGCCCCCCCCGGTTCCCT
5._GC-01-041-2-18
AAAATTACGGGGCCCCCCCCGGTTCCCT
6._GC-01-041-2-18
AAAATTACGGGGCCCCCCCCGGTTCCCT
7._GC-01-041-2-18
AAAATTACGGGGCCCCCCCCGGTTCCCT
8._SIAL_169
AAAATTAC________CCCCGG__CC__
9._SIAL_169
AAAATTAC________CCCCGG__CC__
10._SIAL_169
AAAATTAC________CCCCGG__CC__
11._SIAL_169
AAAATTAC________CCCCGG__CC__
12._SIAL_169
AAAATTAC________CCCCGG__CC__
13._SIAL_169
AAAATTAC________CCCCGG__CC__
14._SIAL_169
AAAATTAC________CCCCGG__CC__
15._SIAL_169
AAAATTAC________CCCCGG__CC__
16._SIAL_169
AAAACTAA________CCCCGG__CC__
17._GC-01-41-2-18
AAAA__ACGGGG__GGGG__GGAAGGAG
 1516171819202122232425262728
_Input profile
AACCAAGGCCCGCTAATTGGTTAACCGG
1._GC-01-041-2-18
AACCAAGGCCCGCTAATTGGTTAACCGG
2._GC-01-041-2-18
AACCAAGGCCCGCTAATTGGTTAACCGG
3._GC-01-041-2-18
AACCAAGGCCCGCTAATTGGTTAACCGG
4._GC-01-041-2-18
AACCAAGGCCCGCTAATTGGTTAACCGG
5._GC-01-041-2-18
AACCAAGGCCCGCTAATTGGTTAACCGG
6._GC-01-041-2-18
AACCAAGGCCCGCTAATTGGTTAACCGG
7._GC-01-041-2-18
AACCAAGGCCCGCTAATTGG__AACCGG
8._SIAL_169
____AA____CG________TTAA__GG
9._SIAL_169
____AA____CG________TTAA__GG
10._SIAL_169
____AA____CG________TTAA__GG
11._SIAL_169
____AA____CG________TTAA__GG
12._SIAL_169
____AA____CG________TTAA__GG
13._SIAL_169
____AA____CG________TTAA__GG
14._SIAL_169
____AA____CG________TTAA__GG
15._SIAL_169
____AA____CG__________AA__GG
16._SIAL_169
____AA____GG________TTAA__GG
17._GC-01-41-2-18
TTCCAACC__CGAGGGAAGG__AAGGCC
 2930313233343536373839404142
_Input profile
AATTGGAACGCCGGTTGGTTAGTTAACC
1._GC-01-041-2-18
AATTGGAACGCCGGTTGGTTAGTTAACC
2._GC-01-041-2-18
AATTGGAACGCCGGTTGGTTAGTTAACC
3._GC-01-041-2-18
AATTGGAACGCCGGTTGGTTAGTTAACC
4._GC-01-041-2-18
AATTGGAACGCCGGTTGGTTAGTTAACC
5._GC-01-041-2-18
AATTGGAACGCCGGTTGGTTAGTTAACC
6._GC-01-041-2-18
AATTGGAACGCCGGTTGGTTAGTTAACC
7._GC-01-041-2-18
AATTGGAACGCCGGTTGGTTAGTTAACC
8._SIAL_169
AA______CG__GGTT____AG______
9._SIAL_169
AA______CG__GGTT____AG______
10._SIAL_169
AA______CG__GGTT____AG______
11._SIAL_169
AA______CG__GGTT____AG______
12._SIAL_169
AA______CG__GGTT____AG______
13._SIAL_169
AA______CG__GGTT____AG______
14._SIAL_169
AA______CG__GGTT____AG______
15._SIAL_169
AA______CG__GGTT____AG______
16._SIAL_169
AA______GG__GGTT____AG______
17._GC-01-41-2-18
AAAACCAACGCCGGAACCAAAGAAAAGG
 4344454647484950515253545556
_Input profile
GGTTCCAAGGAACCCCGGGGGTTTCCTT
1._GC-01-041-2-18
GGTTCCAAGGAACCCCGGGGGTTTCCTT
2._GC-01-041-2-18
GGTTCCAAGGAACCCCGGGGGTTTCCTT
3._GC-01-041-2-18
GGTTCCAAGGAACCCCGGGGGTTTCCTT
4._GC-01-041-2-18
GGTTCCAAGGAACCCCGGGGGTTTCCTT
5._GC-01-041-2-18
GGTTCCAAGGAACCCCGGGGGTTTCCTT
6._GC-01-041-2-18
GGTTCCAAGGAACCCCGGGGGTTTCCTT
7._GC-01-041-2-18
GGTTCCAAGGAACCCCGGGGGTTTCCTT
8._SIAL_169
____CC__________________CCTT
9._SIAL_169
____CC__________________CCTT
10._SIAL_169
____CC__________________CCTT
11._SIAL_169
____CC__________________CCTT
12._SIAL_169
____CC__________________CCTT
13._SIAL_169
____CC__________________CCTT
14._SIAL_169
____CC__________________CCTT
15._SIAL_169
____CC__________________CCTT
16._SIAL_169
____CC__________________CCTT
17._GC-01-41-2-18
CC__GG__GGAAGG__GGGGACAAGGAA
 5758596061626364656667686970
_Input profile
TTAACCTTCCAAGGGGACAATTGGGGTT
1._GC-01-041-2-18
TTAACCTTCCAAGGGGACAATTGGGGTT
2._GC-01-041-2-18
TTAACCTTCCAAGGGGACAATTGGGGTT
3._GC-01-041-2-18
TTAACCTTCCAAGGGGACAATTGGGGTT
4._GC-01-041-2-18
TTAACCTTCCAAGGGGACAATTGGGGTT
5._GC-01-041-2-18
TTAACCTTCCAAGGGGACAATTGGGGTT
6._GC-01-041-2-18
TTAACC__CCAAGGGGACAATTGGGGTT
7._GC-01-041-2-18
TTAACC__CCAAGGGGACAATTGGGGTT
8._SIAL_169
____CC__CCAAGG__ACAATTGG____
9._SIAL_169
____CC__CCAAGG__ACAATTGG____
10._SIAL_169
____CC__CCAAGG__ACAATTGG____
11._SIAL_169
____CC__CCAAGG__ACAATTGG____
12._SIAL_169
____CC__CCAAGG__ACAATTGG____
13._SIAL_169
____CC__CCAAGG__ACAATTGG____
14._SIAL_169
____CC__CCAAGG__ACAATTGG____
15._SIAL_169
____CC__CCAAGG__ACAATTGG____
16._SIAL_169
____CC__TTAAGG__AAAATTGG____
17._GC-01-41-2-18
AAAAGGAAGGAAGGGGACAAAACCGG__
 7172737475767778798081828384
_Input profile
CCGGTTACAACCAAAACCGGCCTTAATT
1._GC-01-041-2-18
CCGGTTACAACCAAAACCGGCCTTAATT
2._GC-01-041-2-18
CCGGTTACAACCAAAACCGGCCTTAATT
3._GC-01-041-2-18
CCGGTTACAACCAAAACCGGCCTTAATT
4._GC-01-041-2-18
CCGGTTACAACCAAAACCGGCCTTAATT
5._GC-01-041-2-18
CCGGTTACAACCAAAACCGGCCTTAATT
6._GC-01-041-2-18
CCGGTTACAACCAAAACCGGCCTTAATT
7._GC-01-041-2-18
__GGTTACAACCAAAACCGGCCTTAA__
8._SIAL_169
__GGTT__________CCGG______TT
9._SIAL_169
__GGTT__________CCGG______TT
10._SIAL_169
__GGTT__________CCGG______TT
11._SIAL_169
__GGTT__________CCGG______TT
12._SIAL_169
__GGTT__________CCGG______TT
13._SIAL_169
__GGTT__________CCGG______TT
14._SIAL_169
__GGTT__________CCGG______TT
15._SIAL_169
__GGTT__________CCGG________
16._SIAL_169
__AATT__________CCGG______TT
17._GC-01-41-2-18
____AAACAACCAA__CCCCGGTTAAAA
 85868788899091929394    
_Input profile
TTCTTTAACTCCTTTTAAGGX_XX_XX_XX_X
1._GC-01-041-2-18
TTCTTTAACTCCTTTTAAGGX_XX_XX_XX_X
2._GC-01-041-2-18
TTCTTTAACTCCTTTTAAGGX_XX_XX_XX_X
3._GC-01-041-2-18
TTCTTTAACTCCTTTTAAGGX_XX_XX_XX_X
4._GC-01-041-2-18
TTCTTTAACTCCTTTTAAGGX_XX_XX_XX_X
5._GC-01-041-2-18
TTCTTTAACTCCTTTTAAGGX_XX_XX_XX_X
6._GC-01-041-2-18
TTCTTTAACTCCTTTTAAGGX_XX_XX_XX_X
7._GC-01-041-2-18
TTCTTTAACTCCTTTTAAGGX_XX_XX_XX_X
8._SIAL_169
TTCT__AA__CCTTTT____X_XX_XX_XX_X
9._SIAL_169
TTCT__AA__CCTTTT____X_XX_XX_XX_X
10._SIAL_169
TTCT__AA__CCTTTT____X_XX_XX_XX_X
11._SIAL_169
TTCT__AA__CCTTTT____X_XX_XX_XX_X
12._SIAL_169
TTCT__AA__CCTTTT____X_XX_XX_XX_X
13._SIAL_169
TTCT__AA__CCTTTT____X_XX_XX_XX_X
14._SIAL_169
TTCT__AA__CCTTTT____X_XX_XX_XX_X
15._SIAL_169
TTCT__AA__CCTTTT____X_XX_XX_XX_X
16._SIAL_169
TTTT__AA__CCTTTT____X_XX_XX_XX_X
17._GC-01-41-2-18
AA__AA____GGAAAATTGGX_XX_XX_XX_X

Input profile: SIAL_169 GC-01-041-2-18

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP1
 Mars, 2018

1._SIAL_169 GC-01-041-2-18

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13 > FP3
 Mars, 2018

2._SIAL_169 GC-01-041-2-18

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12 > FP2
 Mars, 2018

3._SIAL_169 GC-01-041-2-18

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8 > FP4
 Mars, 2018

4._SIAL_169 GC-01-041-2-18

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

5._SIAL_169 GC-01-041-2-18

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

6._SIAL_169 GC-01-041-2-18

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

7._SIAL_169 GC-01-041-2-18

identical
90 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

8._SIAL_169

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1214 8 > FP
 Dapeng Zhang, 2016

9._SIAL_169

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1214 2 > FP
 Dapeng Zhang, 2016

10._SIAL_169

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1214 13 > F
 Dapeng Zhang, 2016

11._SIAL_169

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1214 12 > F
 Dapeng Zhang, 2016

12._SIAL_169

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1214 10
 Dapeng Zhang, 2016

13._SIAL_169

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1214 6
 Dapeng Zhang, 2016

14._SIAL_169

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1214 4
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

15._SIAL_169

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1214 9
 Dapeng Zhang, 2016

16._SIAL_169

87.5 %
40 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

17._SIAL_169 GC-01-41-2-18

46.8 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 14, Tree: 4
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240