SNP Profiles of SIAL 169   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AAAATTACGGGGCCCCCCCCGGTTCCCT
1._SIAL_169___
AAAATTACGGGGCCCCCCCCGGTTCCCT
2._SIAL_169___
AAAATTACGGGGCCCCCCCCGGTTCCCT
3._SIAL_169___
AAAATTACGGGGCCCCCCCCGGTTCCCT
4._SIAL_169___
AAAATTACGGGGCCCCCCCCGGTTCCCT
5._SIAL_169___
AAAATTACGGGGCCCCCCCCGGTTCCCT
6._SIAL_169___
AAAATTACGGGGCCCCCCCCGGTTCCCT
7._SIAL_169___
AAAATTACGGGGCCCCCCCCGGTTCCCT
8._SIAL_169___
AAAATTAC________CCCCGG__CC__
9._SIAL_169___
AAAATTAC________CCCCGG__CC__
10._SIAL_169___
AAAATTAC________CCCCGG__CC__
11._SIAL_169___
AAAATTAC________CCCCGG__CC__
12._SIAL_169___
AAAATTAC________CCCCGG__CC__
13._SIAL_169___
AAAATTAC________CCCCGG__CC__
14._SIAL_169___
AAAATTAC________CCCCGG__CC__
15._SIAL_169___
AAAATTAC________CCCCGG__CC__
16._SIAL_169___
AAAACTAA________CCCCGG__CC__
17._SIAL_169___
AAAA__ACGGGG__GGGG__GGAAGGAG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AACCAAGGCCCGCTAATTGGAACCGGAA
1._SIAL_169___
AACCAAGGCCCGCTAATTGGAACCGGAA
2._SIAL_169___
AACCAAGGCCCGCTAATTGGAACCGGAA
3._SIAL_169___
AACCAAGGCCCGCTAATTGGAACCGGAA
4._SIAL_169___
AACCAAGGCCCGCTAATTGGAACCGGAA
5._SIAL_169___
AACCAAGGCCCGCTAATTGGAACCGGAA
6._SIAL_169___
AACCAAGGCCCGCTAATTGGAACCGGAA
7._SIAL_169___
AACCAAGGCCCGCTAATTGGAACCGGAA
8._SIAL_169___
____AA____CG________AA__GGAA
9._SIAL_169___
____AA____CG________AA__GGAA
10._SIAL_169___
____AA____CG________AA__GGAA
11._SIAL_169___
____AA____CG________AA__GGAA
12._SIAL_169___
____AA____CG________AA__GGAA
13._SIAL_169___
____AA____CG________AA__GGAA
14._SIAL_169___
____AA____CG________AA__GGAA
15._SIAL_169___
____AA____CG________AA__GGAA
16._SIAL_169___
____AA____GG________AA__GGAA
17._SIAL_169___
TTCCAACC__CGAGGGAAGGAAGGCCAA
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
TTGGAACGCCGGTTGGTTAGTTAACCGG
1._SIAL_169___
TTGGAACGCCGGTTGGTTAGTTAACCGG
2._SIAL_169___
TTGGAACGCCGGTTGGTTAGTTAACCGG
3._SIAL_169___
TTGGAACGCCGGTTGGTTAGTTAACCGG
4._SIAL_169___
TTGGAACGCCGGTTGGTTAGTTAACCGG
5._SIAL_169___
TTGGAACGCCGGTTGGTTAGTTAACCGG
6._SIAL_169___
TTGGAACGCCGGTTGGTTAGTTAACCGG
7._SIAL_169___
TTGGAACGCCGGTTGGTTAGTTAACCGG
8._SIAL_169___
______CG__GGTT____AG________
9._SIAL_169___
______CG__GGTT____AG________
10._SIAL_169___
______CG__GGTT____AG________
11._SIAL_169___
______CG__GGTT____AG________
12._SIAL_169___
______CG__GGTT____AG________
13._SIAL_169___
______CG__GGTT____AG________
14._SIAL_169___
______CG__GGTT____AG________
15._SIAL_169___
______CG__GGTT____AG________
16._SIAL_169___
______GG__GGTT____AG________
17._SIAL_169___
AACCAACGCCGGAACCAAAGAAAAGGCC
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
TTCCAAGGAACCCCGGGGGTTTCCTTTT
1._SIAL_169___
TTCCAAGGAACCCCGGGGGTTTCCTTTT
2._SIAL_169___
TTCCAAGGAACCCCGGGGGTTTCCTTTT
3._SIAL_169___
TTCCAAGGAACCCCGGGGGTTTCCTTTT
4._SIAL_169___
TTCCAAGGAACCCCGGGGGTTTCCTTTT
5._SIAL_169___
TTCCAAGGAACCCCGGGGGTTTCCTTTT
6._SIAL_169___
TTCCAAGGAACCCCGGGGGTTTCCTTTT
7._SIAL_169___
TTCCAAGGAACCCCGGGGGTTTCCTTTT
8._SIAL_169___
__CC__________________CCTT__
9._SIAL_169___
__CC__________________CCTT__
10._SIAL_169___
__CC__________________CCTT__
11._SIAL_169___
__CC__________________CCTT__
12._SIAL_169___
__CC__________________CCTT__
13._SIAL_169___
__CC__________________CCTT__
14._SIAL_169___
__CC__________________CCTT__
15._SIAL_169___
__CC__________________CCTT__
16._SIAL_169___
__CC__________________CCTT__
17._SIAL_169___
__GG__GGAAGG__GGGGACAAGGAAAA
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
AACCCCAAGGGGACAATTGGGGTTGGTT
1._SIAL_169___
AACCCCAAGGGGACAATTGGGGTTGGTT
2._SIAL_169___
AACCCCAAGGGGACAATTGGGGTTGGTT
3._SIAL_169___
AACCCCAAGGGGACAATTGGGGTTGGTT
4._SIAL_169___
AACCCCAAGGGGACAATTGGGGTTGGTT
5._SIAL_169___
AACCCCAAGGGGACAATTGGGGTTGGTT
6._SIAL_169___
AACCCCAAGGGGACAATTGGGGTTGGTT
7._SIAL_169___
AACCCCAAGGGGACAATTGGGGTTGGTT
8._SIAL_169___
__CCCCAAGG__ACAATTGG____GGTT
9._SIAL_169___
__CCCCAAGG__ACAATTGG____GGTT
10._SIAL_169___
__CCCCAAGG__ACAATTGG____GGTT
11._SIAL_169___
__CCCCAAGG__ACAATTGG____GGTT
12._SIAL_169___
__CCCCAAGG__ACAATTGG____GGTT
13._SIAL_169___
__CCCCAAGG__ACAATTGG____GGTT
14._SIAL_169___
__CCCCAAGG__ACAATTGG____GGTT
15._SIAL_169___
__CCCCAAGG__ACAATTGG____GGTT
16._SIAL_169___
__CCTTAAGG__AAAATTGG____AATT
17._SIAL_169___
AAGGGGAAGGGGACAAAACCGG____AA
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
ACAACCAAAACCGGCCTTAATTCTTTAA
1._SIAL_169___
ACAACCAAAACCGGCCTTAATTCTTTAA
2._SIAL_169___
ACAACCAAAACCGGCCTTAATTCTTTAA
3._SIAL_169___
ACAACCAAAACCGGCCTTAATTCTTTAA
4._SIAL_169___
ACAACCAAAACCGGCCTTAATTCTTTAA
5._SIAL_169___
ACAACCAAAACCGGCCTTAATTCTTTAA
6._SIAL_169___
ACAACCAAAACCGGCCTTAATTCTTTAA
7._SIAL_169___
ACAACCAAAACCGGCCTTAATTCTTTAA
8._SIAL_169___
__________CCGG______TTCT__AA
9._SIAL_169___
__________CCGG______TTCT__AA
10._SIAL_169___
__________CCGG______TTCT__AA
11._SIAL_169___
__________CCGG______TTCT__AA
12._SIAL_169___
__________CCGG______TTCT__AA
13._SIAL_169___
__________CCGG______TTCT__AA
14._SIAL_169___
__________CCGG______TTCT__AA
15._SIAL_169___
__________CCGG______TTCT__AA
16._SIAL_169___
__________CCGG______TTTT__AA
17._SIAL_169___
ACAACCAA__CCCCGGTTAAAA__AA__
 85 86 87 88 89 90         
_Input profile
CTCCTTTTAAGGX_XX_XX_XX_XX_XX_XX_XX_X
1._SIAL_169___
CTCCTTTTAAGGX_XX_XX_XX_XX_XX_XX_XX_X
2._SIAL_169___
CTCCTTTTAAGGX_XX_XX_XX_XX_XX_XX_XX_X
3._SIAL_169___
CTCCTTTTAAGGX_XX_XX_XX_XX_XX_XX_XX_X
4._SIAL_169___
CTCCTTTTAAGGX_XX_XX_XX_XX_XX_XX_XX_X
5._SIAL_169___
CTCCTTTTAAGGX_XX_XX_XX_XX_XX_XX_XX_X
6._SIAL_169___
CTCCTTTTAAGGX_XX_XX_XX_XX_XX_XX_XX_X
7._SIAL_169___
CTCCTTTTAAGGX_XX_XX_XX_XX_XX_XX_XX_X
8._SIAL_169___
__CCTTTT____X_XX_XX_XX_XX_XX_XX_XX_X
9._SIAL_169___
__CCTTTT____X_XX_XX_XX_XX_XX_XX_XX_X
10._SIAL_169___
__CCTTTT____X_XX_XX_XX_XX_XX_XX_XX_X
11._SIAL_169___
__CCTTTT____X_XX_XX_XX_XX_XX_XX_XX_X
12._SIAL_169___
__CCTTTT____X_XX_XX_XX_XX_XX_XX_XX_X
13._SIAL_169___
__CCTTTT____X_XX_XX_XX_XX_XX_XX_XX_X
14._SIAL_169___
__CCTTTT____X_XX_XX_XX_XX_XX_XX_XX_X
15._SIAL_169___
__CCTTTT____X_XX_XX_XX_XX_XX_XX_XX_X
16._SIAL_169___
__CCTTTT____X_XX_XX_XX_XX_XX_XX_XX_X
17._SIAL_169___
__GGAAAATTGGX_XX_XX_XX_XX_XX_XX_XX_X

Input profile: SIAL_169 GC-01-041-2-18

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

1._SIAL_169 GC-01-041-2-18

identical
90 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13 > FP3
 Mars, 2018

2._SIAL_169 GC-01-041-2-18

identical
90 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12 > FP2
 Mars, 2018

3._SIAL_169 GC-01-041-2-18

identical
90 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

4._SIAL_169 GC-01-041-2-18

identical
90 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8 > FP4
 Mars, 2018

5._SIAL_169 GC-01-041-2-18

identical
90 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

6._SIAL_169 GC-01-041-2-18

identical
90 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

7._SIAL_169 GC-01-041-2-18

identical
90 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP1
 Mars, 2018

8._SIAL_169

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1214 8 > FP
 Dapeng Zhang, 2016

9._SIAL_169

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1214 2 > FP
 Dapeng Zhang, 2016

10._SIAL_169

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1214 13 > F
 Dapeng Zhang, 2016

11._SIAL_169

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1214 12 > F
 Dapeng Zhang, 2016

12._SIAL_169

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1214 10
 Dapeng Zhang, 2016

13._SIAL_169

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1214 9
 Dapeng Zhang, 2016

14._SIAL_169

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1214 6
 Dapeng Zhang, 2016

15._SIAL_169

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1214 4
 Dapeng Zhang, 2016

16._SIAL_169

86.8 %
38 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

17._SIAL_169 GC-01-41-2-18

48.1 %
77 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 14, Tree: 4
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP372
26TcSNP448 27TcSNP872 28TcSNP953 29TcSNP1034 30TcSNP1175
31TcSNP1111 32TcSNP577 33TcSNP90 34TcSNP998 35TcSNP150
36TcSNP28 37TcSNP751 38TcSNP1484 39TcSNP602 40TcSNP561
41TcSNP894 42TcSNP1063 43TcSNP1126 44TcSNP1270 45TcSNP606
46TcSNP329 47TcSNP689 48TcSNP944 49TcSNP1242 50TcSNP1383
51TcSNP547 52TcSNP776 53TcSNP1309 54TcSNP151 55TcSNP1520
56TcSNP799 57TcSNP899 58TcSNP226 59TcSNP1442 60TcSNP193
61TcSNP25 62TcSNP364 63TcSNP144 64TcSNP230 65TcSNP560
66TcSNP723 67TcSNP731 68TcSNP701 69TcSNP645 70TcSNP917
71Tcm003s01336581 72Tcm003s07402719 73Tcm001s00947643 74Tcm006s26664133 75Tcm002s20575712
76TcSNP529 77TcSNP1458 78TcSNP60 79TcSNP430 80TcSNP823
81TcSNP994 82TcSNP1144 83TcSNP1156 84TcSNP469 85TcSNP999
86TcSNP242 87TcSNP1253 88TcSNP1414 89TcSNP154 90TcSNP240