SNP Profiles of SIAL 88   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AAAATTAAGGGGCCCCCCCCGGTTCCCT
1._SIAL_88___
AAAATTAAGGGGCCCCCCCCGGTTCCCT
2._SIAL_88___
AAAATTAAGGGGCCCCCCCCGGTTCCCT
3._SIAL_88___
AAAATTAAGGGGCCCCCCCCGGTTCCCT
4._SIAL_88___
AAAATTAAGGGGCCCCCCCCGGTTCCCT
5._SIAL_88___
AAAATTAAGGGGCCCCCCCCGGTTCCCT
6._SIAL_88___
AAAATTAAGGGGCCCCCCCCGGTTCCCT
7._SIAL_88___
AAAATTACGGGGCCCCCCCCGGTTCCCT
8._SIAL_88___
AAAATTACGGGGCCCCCCCCGGTTCCCT
9._SIAL_88___
AAAATTACGGGGCCCCCCCCGGTTCCCT
10._SIAL_88___
AAAATTACGGGGCCCCCCCCGGTTCCCT
11._SIAL_88___
AAAATTACGGGGCCCCCCCCGGTTCCCT
12._SIAL_88___
AAAATTACGGGGCCCCCCCCGGTTCCCT
13._SIAL_88___
AAAATTACGGGGCCCCCCCCGGTTCCCT
14._SIAL_88___
AAAATTACGGGGCCCCCCCCGGTTCCCT
15._SIAL_88___
AAAATTACGGGGCCCCCCCCGGTTCCCT
16._SIAL_88___
AAAATTACGGGGCCCCCCCCGGTTCCCT
17._SIAL_88___
AAAATTACGGGGCCCCCCCCGGTTCCCT
18._SIAL_88___
AAACCCACGGGGCTCCCCCCGGTTCCTT
19._SIAL_88___
AAAA__AAGGGG__GGGG__GGAAGGAG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AACCAAGGCCGGTTAATTGGTTAACCGG
1._SIAL_88___
AACCAAGGCCGGTTAATTGGTTAACCGG
2._SIAL_88___
AACCAAGGCCGGTTAATTGGTTAACCGG
3._SIAL_88___
AACCAAGGCCGGTTAATTGGTTAACCGG
4._SIAL_88___
AACCAAGGCCGGTTAATTGGTTAACCGG
5._SIAL_88___
__CCAAGGCCGGTTAATTGGTTAACCGG
6._SIAL_88___
AACCAAGGCCGGTTAATTGGTTAACCGG
7._SIAL_88___
AACCAAGGCCCGCTAATTGGTTAACCGG
8._SIAL_88___
AACCAAGGCCCGCTAATTGGTTAACCGG
9._SIAL_88___
AACCAAGGCCCGCTAATTGGTTAACCGG
10._SIAL_88___
AACCAAGGCCCGCTAATTGGTTAACCGG
11._SIAL_88___
AACCAAGGCCCGCTAATTGGTTAACCGG
12._SIAL_88___
AACCAAGGCCCGCTAATTGGTTAACCGG
13._SIAL_88___
AACCAAGGCCCGCTAATTGGTTAACCGG
14._SIAL_88___
AACCAAGGCCCGCTAATTGGTTAACCGG
15._SIAL_88___
AACCAAGGCCCGCTAATTGGTTAACCGG
16._SIAL_88___
AACCAAGGCCCGCTAATTGGTTAACCGG
17._SIAL_88___
AACCAAGGCCCGCTAATTGGTTAACCGG
18._SIAL_88___
AACCAGGGCCCCTTAATTGGTTAACCGG
19._SIAL_88___
TTCCAACC__GGAAGGAAGGTTAAGGCC
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
AATTGGAACCCCGGTTGGTTAATTAACC
1._SIAL_88___
AATTGGAACCCCGGTTGGTTAATTAACC
2._SIAL_88___
AATTGGAACCCCGGTTGGTTAATTAACC
3._SIAL_88___
AATTGGAACCCCGGTTGGTTAATTAACC
4._SIAL_88___
AATTGGAACCCCGGTTGGTTAATTAACC
5._SIAL_88___
AATTGGAACCCCGGTTGGTTAATTAACC
6._SIAL_88___
AATTGGAACCCCGGTTGGTTAATTAACC
7._SIAL_88___
AATTGGAACGCCGGTTGGTTAGTTAACC
8._SIAL_88___
AATTGGAACGCCGGTTGGTTAGTTAACC
9._SIAL_88___
AATTGGAACGCCGGTTGGTTAGTTAACC
10._SIAL_88___
AATTGGAACGCCGGTTGGTTAGTTAACC
11._SIAL_88___
AATTGGAACGCCGGTTGGTTAGTTAACC
12._SIAL_88___
AATTGGAACGCCGGTTGGTTAGTTAACC
13._SIAL_88___
AATTGGAACGCCGGTTGGTTAGTTAACC
14._SIAL_88___
AATTGGAACGCCGGTTGGTTAGTTAACC
15._SIAL_88___
AATTGGAACGCCGGTTGGTTAGTTAACC
16._SIAL_88___
AATTGGAACGCCGGTTGGTTAGTTAACC
17._SIAL_88___
AATTGGAACGCCGGTTGGTTAGTTAACC
18._SIAL_88___
AATTGTGGGGCCAAGGGGTTAACCAGCC
19._SIAL_88___
AAAACCAACCCCGGAACCAAAAAAAAGG
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
GGTTCCAAGGAACCCCGGGGTTTTCCTT
1._SIAL_88___
GGTTCCAAGGAACCCCGGGGTTTTCCTT
2._SIAL_88___
GGTTCCAAGGAACCCCGGGGTTTTCCTT
3._SIAL_88___
GGTTCCAAGGAACCCCGGGGTTTTCCTT
4._SIAL_88___
GGTTCCAAGGAACC__GGGGTTTTCCTT
5._SIAL_88___
GGTTCCAAGGAACCCCGGGGTTTTCCTT
6._SIAL_88___
GGTTCCAAGGAACCCCGGGGTTTT__TT
7._SIAL_88___
GGTTCCAAGGAACCCCGGGGGTTTCCTT
8._SIAL_88___
GGTTCCAAGGAACCCCGGGG__TTCCTT
9._SIAL_88___
GGTTCCAAGGAACCCCGGGGGTTTCCTT
10._SIAL_88___
GGTTCCAAGGAACCCCGGGGGTTTCCTT
11._SIAL_88___
GGTTCCAAGGAACCCCGGGGGTTTCCTT
12._SIAL_88___
GGTTCCAAGGAACCCCGGGGGTTTCCTT
13._SIAL_88___
GGTTCCAAGGAACCCCGGGGGTTTCCTT
14._SIAL_88___
GGTTCCAAGGAACCCCGGGGGTTTCCTT
15._SIAL_88___
GGTTCCAAGGAACCCCGGGGGTTTCCTT
16._SIAL_88___
GGTTCCAAGGAACCCCGGGGGTTTCCTT
17._SIAL_88___
GGTTCCAAGGAACCCCGGGGGTTTCCTT
18._SIAL_88___
GGTTTTAAGGAACCCCGGAAGGTTCCCC
19._SIAL_88___
CC__GG__GGAAGG__GGGGAAAAGGAA
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
TTAACCTTCCAAGGGGAAAATTGGGGTT
1._SIAL_88___
TTAACCTTCCAAGGGGAAAATTGGGGTT
2._SIAL_88___
TTAACCTTCCAAGGGGAAAATTGGGGTT
3._SIAL_88___
TTAACCTTCCAAGGGGAAAATTGGGGTT
4._SIAL_88___
TTAACCTTCCAAGGGGAAAATTGGGGTT
5._SIAL_88___
TTAACCTTCCAAGGGGAAAATTGGGGTT
6._SIAL_88___
TTAACCTTCCAAGGGGAAAATTGGGGTT
7._SIAL_88___
TTAACCTTCCAAGGGG__AATTGGGGTT
8._SIAL_88___
TTAACCTTCCAAGGGGACAATTGGGGTT
9._SIAL_88___
TTAACCTTCCAAGGGGACAATTGGGGTT
10._SIAL_88___
TTAACCTTCCAAGGGGACAATTGGGGTT
11._SIAL_88___
TTAACCTTCCAAGGGGACAATTGGGGTT
12._SIAL_88___
TTAACCTTCCAAGGGGACAATTGGGGTT
13._SIAL_88___
TTAACCTTCCAAGGGGACAATTGGGGTT
14._SIAL_88___
TTAACCTTCCAAGGGGACAATTGGGGTT
15._SIAL_88___
TTAACCTTCCAAGGGGACAATTGGGGTT
16._SIAL_88___
TTAACCTTCCAAGGGGACAATTGGGGTT
17._SIAL_88___
TTAACCTTCCAAGGGGAC__TTGGGGTT
18._SIAL_88___
TTGGCCTTCCAAGGGG__AATTGGGGTT
19._SIAL_88___
AAAAGGAAGGAAGGGGAAAAAACCGG__
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
CCGGTTCCAACCAAAACCGGCCTTAATT
1._SIAL_88___
CCGGTTCCAACCAAAACCGGCCTTAATT
2._SIAL_88___
CCGGTTCCAACCAAAACCGGCCTTAATT
3._SIAL_88___
CCGGTTCCAACCAAAACCGGCCTTAATT
4._SIAL_88___
CCGGTTCCAACCAAAACCGGCCTTAATT
5._SIAL_88___
CCGGTTCCAACCAAAACCGGCCTTAATT
6._SIAL_88___
CCGGTTCCAACCAAAACCGGCCTTAATT
7._SIAL_88___
CCGGTTACAACCAAAACCGGCCTTAATT
8._SIAL_88___
CCGGTTACAACCAAAACCGGCCTTAATT
9._SIAL_88___
CCGGTTACAACCAAAACCGGCCTTAATT
10._SIAL_88___
CCGGTTACAACCAAAACCGGCCTTAATT
11._SIAL_88___
CCGGTTACAACCAAAACCGGCCTTAATT
12._SIAL_88___
CCGGTTACAACCAAAACCGGCCTTAATT
13._SIAL_88___
CCGGTTACAACCAAAACCGGCCTTAATT
14._SIAL_88___
CCGGTTACAACCAAAACCGGCCTTAATT
15._SIAL_88___
CCGGTTACAACCAAAACCGGCCTTAATT
16._SIAL_88___
CCGGTTACAACCAAAACCGGCCTTAATT
17._SIAL_88___
CCGGTTACAACCAAAACCGGCCTTAATT
18._SIAL_88___
CCGGTTACAGACCCAGACGGCCATCCTT
19._SIAL_88___
____AACCAACCAA__CCCCGGTTAAAA
 85 86 87 88 89 90 91 92 93 94     
_Input profile
TTTTTTAATTCCTTTTAAGGX_XX_XX_XX_X
1._SIAL_88___
TTTTTTAATTCCTTTTAAGGX_XX_XX_XX_X
2._SIAL_88___
TTTTTTAATTCCTTTTAAGGX_XX_XX_XX_X
3._SIAL_88___
TTTTTTAATTCCTTTTAAGGX_XX_XX_XX_X
4._SIAL_88___
TTTTTTAATTCCTTTTAAGGX_XX_XX_XX_X
5._SIAL_88___
TTTTTTAATTCCTTTTAAGGX_XX_XX_XX_X
6._SIAL_88___
TTTTTTAATTCCTTTTAAGGX_XX_XX_XX_X
7._SIAL_88___
TTCTTTAACTCCTTTTAAGGX_XX_XX_XX_X
8._SIAL_88___
TTCTTTAACTCCTTTTAAGGX_XX_XX_XX_X
9._SIAL_88___
TTCTTTAACTCCTTTTAAGGX_XX_XX_XX_X
10._SIAL_88___
TTCTTTAACTCCTTTTAAGGX_XX_XX_XX_X
11._SIAL_88___
TTCTTTAACTCCTTTTAAGGX_XX_XX_XX_X
12._SIAL_88___
TTCTTTAACTCCTTTTAAGGX_XX_XX_XX_X
13._SIAL_88___
TTCTTTAACTCCTTTTAAGGX_XX_XX_XX_X
14._SIAL_88___
TTCTTTAACTCCTTTTAAGGX_XX_XX_XX_X
15._SIAL_88___
TTCTTTAACTCCTTTTAAGGX_XX_XX_XX_X
16._SIAL_88___
TTCTTTAACTCC__TTAAGGX_XX_XX_XX_X
17._SIAL_88___
TTCTTTAACTCCTTTTAAGGX_XX_XX_XX_X
18._SIAL_88___
CTCCCTAGCCCCTTTTATGGX_XX_XX_XX_X
19._SIAL_88___
AA__AA____GGAAAATTGGX_XX_XX_XX_X

Input profile: SIAL_88 GC-01-052-3-07

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

1._SIAL_88 NA

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

2._SIAL_88 GC-01-052-3-07

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

3._SIAL_88 GC-01-052-3-07

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

4._SIAL_88 NA

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

5._SIAL_88 NA

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

6._SIAL_88 GC-01-052-3-07

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12 > FP2
 Mars, 2018

7._SIAL_88 NA

95.2 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

8._SIAL_88 GC-01-052-3-07

95.2 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

9._SIAL_88 NA

94.7 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

10._SIAL_88 NA

94.7 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

11._SIAL_88 NA

94.7 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

12._SIAL_88 NA

94.7 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

13._SIAL_88 NA

94.7 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

14._SIAL_88 NA

94.7 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

15._SIAL_88 GC-01-052-3-07

94.7 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

16._SIAL_88 NA

94.6 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

17._SIAL_88 GC-01-052-3-07

94.6 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

18._SIAL_88 GC-01-052-3-07

73.7 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

19._SIAL_88 GC-01-52-3-7

47.5 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 3, Rep: 7, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240