SNP Profiles of SIAL 88   View Data

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 Key

 1234567891011121314
_Input profile
AAACCCACGGGGCTCCCCCCGGTTCCTT
1._GC-01-052-3-07
AAAATTACGGGGCCCCCCCCGGTTCCCT
2._NA
AAAATTACGGGGCCCCCCCCGGTTCCCT
3._NA
AAAATTACGGGGCCCCCCCCGGTTCCCT
4._NA
AAAATTACGGGGCCCCCCCCGGTTCCCT
5._NA
AAAATTACGGGGCCCCCCCCGGTTCCCT
6._NA
AAAATTACGGGGCCCCCCCCGGTTCCCT
7._NA
AAAATTACGGGGCCCCCCCCGGTTCCCT
8._NA
AAAATTACGGGGCCCCCCCCGGTTCCCT
9._GC-01-052-3-07
AAAATTACGGGGCCCCCCCCGGTTCCCT
10._NA
AAAATTACGGGGCCCCCCCCGGTTCCCT
11._GC-01-052-3-07
AAAATTACGGGGCCCCCCCCGGTTCCCT
12._NA
AAAATTAAGGGGCCCCCCCCGGTTCCCT
13._GC-01-052-3-07
AAAATTAAGGGGCCCCCCCCGGTTCCCT
14._GC-01-052-3-07
AAAATTAAGGGGCCCCCCCCGGTTCCCT
15._GC-01-052-3-07
AAAATTAAGGGGCCCCCCCCGGTTCCCT
16._NA
AAAATTAAGGGGCCCCCCCCGGTTCCCT
17._NA
AAAATTAAGGGGCCCCCCCCGGTTCCCT
18._GC-01-052-3-07
AAAATTAAGGGGCCCCCCCCGGTTCCCT
19._GC-01-52-3-7
AAAA__AAGGGG__GGGG__GGAAGGAG
 1516171819202122232425262728
_Input profile
AACCAAAGGGCCCCTTAATTGGTTAACC
1._GC-01-052-3-07
AACC__AAGGCCCGCTAATTGGTTAACC
2._NA
AACC__AAGGCCCGCTAATTGGTTAACC
3._NA
AACC__AAGGCCCGCTAATTGGTTAACC
4._NA
AACC__AAGGCCCGCTAATTGGTTAACC
5._NA
AACC__AAGGCCCGCTAATTGGTTAACC
6._NA
AACC__AAGGCCCGCTAATTGGTTAACC
7._NA
AACC__AAGGCCCGCTAATTGGTTAACC
8._NA
AACC__AAGGCCCGCTAATTGGTTAACC
9._GC-01-052-3-07
AACC__AAGGCCCGCTAATTGGTTAACC
10._NA
AACC__AAGGCCCGCTAATTGGTTAACC
11._GC-01-052-3-07
AACC__AAGGCCCGCTAATTGGTTAACC
12._NA
AACC__AAGGCCGGTTAATTGGTTAACC
13._GC-01-052-3-07
AACC__AAGGCCGGTTAATTGGTTAACC
14._GC-01-052-3-07
AACC__AAGGCCGGTTAATTGGTTAACC
15._GC-01-052-3-07
AACC__AAGGCCGGTTAATTGGTTAACC
16._NA
AACC__AAGGCCGGTTAATTGGTTAACC
17._NA
__CC__AAGGCCGGTTAATTGGTTAACC
18._GC-01-052-3-07
AACC__AAGGCCGGTTAATTGGTTAACC
19._GC-01-52-3-7
TTCCGGAACC__GGAAGGAAGGTTAAGG
 2930313233343536373839404142
_Input profile
GGAATTGTGGGGCCAAGGGGTTAACCAG
1._GC-01-052-3-07
GGAATTGGAACGCCGGTTGGTTAGTTAA
2._NA
GGAATTGGAACGCCGGTTGGTTAGTTAA
3._NA
GGAATTGGAACGCCGGTTGGTTAGTTAA
4._NA
GGAATTGGAACGCCGGTTGGTTAGTTAA
5._NA
GGAATTGGAACGCCGGTTGGTTAGTTAA
6._NA
GGAATTGGAACGCCGGTTGGTTAGTTAA
7._NA
GGAATTGGAACGCCGGTTGGTTAGTTAA
8._NA
GGAATTGGAACGCCGGTTGGTTAGTTAA
9._GC-01-052-3-07
GGAATTGGAACGCCGGTTGGTTAGTTAA
10._NA
GGAATTGGAACGCCGGTTGGTTAGTTAA
11._GC-01-052-3-07
GGAATTGGAACGCCGGTTGGTTAGTTAA
12._NA
GGAATTGGAACCCCGGTTGGTTAATTAA
13._GC-01-052-3-07
GGAATTGGAACCCCGGTTGGTTAATTAA
14._GC-01-052-3-07
GGAATTGGAACCCCGGTTGGTTAATTAA
15._GC-01-052-3-07
GGAATTGGAACCCCGGTTGGTTAATTAA
16._NA
GGAATTGGAACCCCGGTTGGTTAATTAA
17._NA
GGAATTGGAACCCCGGTTGGTTAATTAA
18._GC-01-052-3-07
GGAATTGGAACCCCGGTTGGTTAATTAA
19._GC-01-52-3-7
CCAAAACCAACCCCGGAACCAAAAAAAA
 4344454647484950515253545556
_Input profile
CCGGTTTTAAGGAACCCCGGAAGGTTCC
1._GC-01-052-3-07
CCGGTTCCAAGGAACCCCGGGG__TTCC
2._NA
CCGGTTCCAAGGAACCCCGGGGGTTTCC
3._NA
CCGGTTCCAAGGAACCCCGGGGGTTTCC
4._NA
CCGGTTCCAAGGAACCCCGGGGGTTTCC
5._NA
CCGGTTCCAAGGAACCCCGGGGGTTTCC
6._NA
CCGGTTCCAAGGAACCCCGGGGGTTTCC
7._NA
CCGGTTCCAAGGAACCCCGGGGGTTTCC
8._NA
CCGGTTCCAAGGAACCCCGGGGGTTTCC
9._GC-01-052-3-07
CCGGTTCCAAGGAACCCCGGGGGTTTCC
10._NA
CCGGTTCCAAGGAACCCCGGGGGTTTCC
11._GC-01-052-3-07
CCGGTTCCAAGGAACCCCGGGGGTTTCC
12._NA
CCGGTTCCAAGGAACCCCGGGGTTTTCC
13._GC-01-052-3-07
CCGGTTCCAAGGAACCCCGGGGTTTTCC
14._GC-01-052-3-07
CCGGTTCCAAGGAACCCCGGGGTTTTCC
15._GC-01-052-3-07
CCGGTTCCAAGGAACCCCGGGGTTTTCC
16._NA
CCGGTTCCAAGGAACC__GGGGTTTTCC
17._NA
CCGGTTCCAAGGAACCCCGGGGTTTTCC
18._GC-01-052-3-07
CCGGTTCCAAGGAACCCCGGGGTTTT__
19._GC-01-52-3-7
GGCC__GG__GGAAGG__GGGGAAAAGG
 5758596061626364656667686970
_Input profile
CCTTGGCCTTCCAAGGGGAATTGGGGTT
1._GC-01-052-3-07
TTTTAACCTTCCAAGGGGAATTGGGGTT
2._NA
TTTTAACCTTCCAAGGGGAATTGGGGTT
3._NA
TTTTAACCTTCCAAGGGGAATTGGGGTT
4._NA
TTTTAACCTTCCAAGGGGAATTGGGGTT
5._NA
TTTTAACCTTCCAAGGGGAATTGGGGTT
6._NA
TTTTAACCTTCCAAGGGGAATTGGGGTT
7._NA
TTTTAACCTTCCAAGGGGAATTGGGGTT
8._NA
TTTTAACCTTCCAAGGGGAATTGGGGTT
9._GC-01-052-3-07
TTTTAACCTTCCAAGGGGAATTGGGGTT
10._NA
TTTTAACCTTCCAAGGGGAATTGGGGTT
11._GC-01-052-3-07
TTTTAACCTTCCAAGGGG__TTGGGGTT
12._NA
TTTTAACCTTCCAAGGGGAATTGGGGTT
13._GC-01-052-3-07
TTTTAACCTTCCAAGGGGAATTGGGGTT
14._GC-01-052-3-07
TTTTAACCTTCCAAGGGGAATTGGGGTT
15._GC-01-052-3-07
TTTTAACCTTCCAAGGGGAATTGGGGTT
16._NA
TTTTAACCTTCCAAGGGGAATTGGGGTT
17._NA
TTTTAACCTTCCAAGGGGAATTGGGGTT
18._GC-01-052-3-07
TTTTAACCTTCCAAGGGGAATTGGGGTT
19._GC-01-52-3-7
AAAAAAGGAAGGAAGGGGAAAACCGG__
 7172737475767778798081828384
_Input profile
CCGGTTACAGACCCAGACGGCCATCCTT
1._GC-01-052-3-07
CCGGTTACAACCAAAACCGGCCTTAATT
2._NA
CCGGTTACAACCAAAACCGGCCTTAATT
3._NA
CCGGTTACAACCAAAACCGGCCTTAATT
4._NA
CCGGTTACAACCAAAACCGGCCTTAATT
5._NA
CCGGTTACAACCAAAACCGGCCTTAATT
6._NA
CCGGTTACAACCAAAACCGGCCTTAATT
7._NA
CCGGTTACAACCAAAACCGGCCTTAATT
8._NA
CCGGTTACAACCAAAACCGGCCTTAATT
9._GC-01-052-3-07
CCGGTTACAACCAAAACCGGCCTTAATT
10._NA
CCGGTTACAACCAAAACCGGCCTTAATT
11._GC-01-052-3-07
CCGGTTACAACCAAAACCGGCCTTAATT
12._NA
CCGGTTCCAACCAAAACCGGCCTTAATT
13._GC-01-052-3-07
CCGGTTCCAACCAAAACCGGCCTTAATT
14._GC-01-052-3-07
CCGGTTCCAACCAAAACCGGCCTTAATT
15._GC-01-052-3-07
CCGGTTCCAACCAAAACCGGCCTTAATT
16._NA
CCGGTTCCAACCAAAACCGGCCTTAATT
17._NA
CCGGTTCCAACCAAAACCGGCCTTAATT
18._GC-01-052-3-07
CCGGTTCCAACCAAAACCGGCCTTAATT
19._GC-01-52-3-7
____AACCAACCAA__CCCCGGTTAAAA
 85868788899091929394    
_Input profile
CTCCCTAGCCCCTTTTATGGX_XX_XX_XX_X
1._GC-01-052-3-07
TTCTTTAACTCCTTTTAAGGX_XX_XX_XX_X
2._NA
TTCTTTAACTCCTTTTAAGGX_XX_XX_XX_X
3._NA
TTCTTTAACTCCTTTTAAGGX_XX_XX_XX_X
4._NA
TTCTTTAACTCCTTTTAAGGX_XX_XX_XX_X
5._NA
TTCTTTAACTCCTTTTAAGGX_XX_XX_XX_X
6._NA
TTCTTTAACTCCTTTTAAGGX_XX_XX_XX_X
7._NA
TTCTTTAACTCCTTTTAAGGX_XX_XX_XX_X
8._NA
TTCTTTAACTCCTTTTAAGGX_XX_XX_XX_X
9._GC-01-052-3-07
TTCTTTAACTCCTTTTAAGGX_XX_XX_XX_X
10._NA
TTCTTTAACTCC__TTAAGGX_XX_XX_XX_X
11._GC-01-052-3-07
TTCTTTAACTCCTTTTAAGGX_XX_XX_XX_X
12._NA
TTTTTTAATTCCTTTTAAGGX_XX_XX_XX_X
13._GC-01-052-3-07
TTTTTTAATTCCTTTTAAGGX_XX_XX_XX_X
14._GC-01-052-3-07
TTTTTTAATTCCTTTTAAGGX_XX_XX_XX_X
15._GC-01-052-3-07
TTTTTTAATTCCTTTTAAGGX_XX_XX_XX_X
16._NA
TTTTTTAATTCCTTTTAAGGX_XX_XX_XX_X
17._NA
TTTTTTAATTCCTTTTAAGGX_XX_XX_XX_X
18._GC-01-052-3-07
TTTTTTAATTCCTTTTAAGGX_XX_XX_XX_X
19._GC-01-52-3-7
AA__AA____GGAAAATTGGX_XX_XX_XX_X

Input profile: SIAL_88 GC-01-052-3-07

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

1._SIAL_88 GC-01-052-3-07

76.6 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

2._SIAL_88 NA

76.3 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

3._SIAL_88 NA

76.3 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

4._SIAL_88 NA

76.3 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

5._SIAL_88 NA

76.3 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

6._SIAL_88 NA

76.3 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

7._SIAL_88 NA

76.3 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

8._SIAL_88 NA

76.3 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

9._SIAL_88 GC-01-052-3-07

76.3 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

10._SIAL_88 NA

76.1 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

11._SIAL_88 GC-01-052-3-07

76.1 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

12._SIAL_88 NA

73.7 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

13._SIAL_88 GC-01-052-3-07

73.7 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

14._SIAL_88 GC-01-052-3-07

73.7 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

15._SIAL_88 GC-01-052-3-07

73.7 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

16._SIAL_88 NA

73.4 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

17._SIAL_88 NA

73.4 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

18._SIAL_88 GC-01-052-3-07

73.4 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12 > FP2
 Mars, 2018

19._SIAL_88 GC-01-52-3-7

31.3 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 3, Rep: 7, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP577 35TcSNP90
36TcSNP998 37TcSNP150 38TcSNP28 39TcSNP751 40TcSNP1484
41TcSNP602 42TcSNP561 43TcSNP894 44TcSNP1063 45TcSNP1126
46TcSNP1270 47TcSNP606 48TcSNP329 49TcSNP689 50TcSNP944
51TcSNP1242 52TcSNP1383 53TcSNP547 54TcSNP776 55TcSNP1309
56TcSNP151 57TcSNP1520 58TcSNP799 59TcSNP899 60TcSNP226
61TcSNP1439 62TcSNP1442 63TcSNP193 64TcSNP25 65TcSNP364
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240